mRNA_4103 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835ZBV9_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV9_9STRA) HSP 1 Score: 208 bits (529), Expect = 5.960e-67 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 Query: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 423 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF Sbjct: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 141
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835Z233_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z233_9STRA) HSP 1 Score: 141 bits (355), Expect = 6.520e-39 Identity = 111/142 (78.17%), Postives = 115/142 (80.99%), Query Frame = 1 Query: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXX-GAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 423 LGTTYNEEAHTKTL RLQD +GRV DAF +WYVEWLLGGD XXXXXXXXXXXXXXXXXX GAGFGDMFKAAAGEWKC+ACLVRNAPGA KCASCETPAAG A XX XXXXXXXXXX +G I PSGFSF Sbjct: 117 LGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSG--IGPSGFSF 256
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835Z9Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q0_9STRA) HSP 1 Score: 124 bits (310), Expect = 9.800e-31 Identity = 84/113 (74.34%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGA----GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVA 327 LGTTYNEEAHTKTL+RLQD AGRV LDAF DWY+EWLLG XXXXXXXXXXXXXXXXXX GFGDMFKA AGEWKC+ACLVRN P A KC SCETP GA A Sbjct: 165 LGTTYNEEAHTKTLRRLQDGAGRVPLDAFLDWYIEWLLGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQGFGDMFKAVAGEWKCEACLVRNPPTAVKCVSCETPGPGAAA 277
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A1Z5KBE2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBE2_FISSO) HSP 1 Score: 86.7 bits (213), Expect = 4.730e-17 Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGAT-KCASCE 303 LGTTY EE H +T+++L+D++G + +AF WY++WL GGD+ D G G+G++FKA G WKC C+V N PG T KC +CE Sbjct: 805 LGTTYCEEEHRRTIRKLKDSSGIITENAFVSWYIDWLFGGDESDVEDSEEEEDEVDGVVTNELVATGTGWGNIFKAEEGSWKCSVCMVLN-PGETGKCKACE 905
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A7R9W639_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W639_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.180e-14 Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAA---GEWKCDACLVRNAPGATKCASCE 303 +GTTY EE H +T++++ G+VH DAF +WYV+WL G +E D XXXXXXX G+GD FK+ G WKC+ CLV+N P + KCA+CE Sbjct: 155 MGTTYCEEEHRRTIKKIA-VEGKVHRDAFVEWYVDWLFGEGEE--DDEYSEXXXXXXXARDASKAAKQGWGDTFKSMGTKPGSWKCEFCLVQNDPDSIKCAACE 255
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A7S2VZZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZZ8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.850e-11 Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLG--GDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCET 306 +GT Y +AH KT+++L D GR+ ++AF +WY+ WL D E+++ G+GDMF WKC +C+++N A+ CA+CET Sbjct: 50 MGTAYCADAHRKTVKKL-DKGGRISMEAFEEWYLNWLFCEIDDSESTNTSDNDLVSSTDNQADNTTNNNEGWGDMFTIDKDSWKCKSCMLQNKSDASSCAACET 152
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: UPI00074FBB38 (nuclear pore complex protein Nup153 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FBB38) HSP 1 Score: 61.6 bits (148), Expect = 2.660e-8 Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1 Query: 205 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318 GFGD FKAAAG W CD CLV+N P ATKC +CETP G Sbjct: 700 GFGDKFKAAAGSWDCDTCLVQNKPEATKCVACETPKPG 737
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A670IU33_PODMU (Nucleoporin 153 n=22 Tax=Lacertinae TaxID=162266 RepID=A0A670IU33_PODMU) HSP 1 Score: 61.2 bits (147), Expect = 3.610e-8 Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1 Query: 205 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318 GFGD FKAAAG W CD CLV+N P ATKC +CETP G Sbjct: 645 GFGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 682
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A8D2L1Y3_VARKO (Nucleoporin 153 n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2L1Y3_VARKO) HSP 1 Score: 61.2 bits (147), Expect = 3.620e-8 Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1 Query: 205 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318 GFGD FKAAAG W CD CLV+N P ATKC +CETP G Sbjct: 708 GFGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 745
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A8D0BIS9_9SAUR (Nucleoporin 153 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BIS9_9SAUR) HSP 1 Score: 59.3 bits (142), Expect = 1.700e-7 Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1 Query: 208 FGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318 FGD FKAAAG W CD CLV+N P ATKC +CETP G Sbjct: 722 FGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 758 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4103 ID=mRNA_4103|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_20:550972..551394- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCGGCACGACGTACAACGAGGAGGCGCACACCAAGACGCTGCAGCGGCTback to top protein sequence of jgi.p|Trimin1|128765 >Trimin1|128765|gw1.20.4.1 ID=Trimin1|128765|gw1.20.4.1|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGESback to top mRNA from alignment at Contig_20:550972..551394- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_20:550972..551394- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:550972..551394- >mRNA_4103 ID=mRNA_4103|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_20:550972..551394- (Tribonema minus UTEX_B_3156 )back to top |