mRNA_4103 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128765
Unique NamemRNA_4103
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835ZBV9_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV9_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.960e-67
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 423
            LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF
Sbjct:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 141          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835Z233_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z233_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.520e-39
Identity = 111/142 (78.17%), Postives = 115/142 (80.99%), Query Frame = 1
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXX-GAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 423
            LGTTYNEEAHTKTL RLQD +GRV  DAF +WYVEWLLGGD       XXXXXXXXXXXXXXXXXX GAGFGDMFKAAAGEWKC+ACLVRNAPGA KCASCETPAAG  A  XX XXXXXXXXXX     +G  I PSGFSF
Sbjct:  117 LGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSG--IGPSGFSF 256          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A835Z9Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 9.800e-31
Identity = 84/113 (74.34%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGA----GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVA 327
            LGTTYNEEAHTKTL+RLQD AGRV LDAF DWY+EWLLG         XXXXXXXXXXXXXXXXXX      GFGDMFKA AGEWKC+ACLVRN P A KC SCETP  GA A
Sbjct:  165 LGTTYNEEAHTKTLRRLQDGAGRVPLDAFLDWYIEWLLGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQGFGDMFKAVAGEWKCEACLVRNPPTAVKCVSCETPGPGAAA 277          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A1Z5KBE2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBE2_FISSO)

HSP 1 Score: 86.7 bits (213), Expect = 4.730e-17
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGAT-KCASCE 303
            LGTTY EE H +T+++L+D++G +  +AF  WY++WL GGD+    D                   G G+G++FKA  G WKC  C+V N PG T KC +CE
Sbjct:  805 LGTTYCEEEHRRTIRKLKDSSGIITENAFVSWYIDWLFGGDESDVEDSEEEEDEVDGVVTNELVATGTGWGNIFKAEEGSWKCSVCMVLN-PGETGKCKACE 905          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A7R9W639_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W639_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.180e-14
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAA---GEWKCDACLVRNAPGATKCASCE 303
            +GTTY EE H +T++++    G+VH DAF +WYV+WL G  +E   D    XXXXXXX          G+GD FK+     G WKC+ CLV+N P + KCA+CE
Sbjct:  155 MGTTYCEEEHRRTIKKIA-VEGKVHRDAFVEWYVDWLFGEGEE--DDEYSEXXXXXXXARDASKAAKQGWGDTFKSMGTKPGSWKCEFCLVQNDPDSIKCAACE 255          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A7S2VZZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZZ8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.850e-11
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLG--GDDEASSDGXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCET 306
            +GT Y  +AH KT+++L D  GR+ ++AF +WY+ WL     D E+++                      G+GDMF      WKC +C+++N   A+ CA+CET
Sbjct:   50 MGTAYCADAHRKTVKKL-DKGGRISMEAFEEWYLNWLFCEIDDSESTNTSDNDLVSSTDNQADNTTNNNEGWGDMFTIDKDSWKCKSCMLQNKSDASSCAACET 152          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: UPI00074FBB38 (nuclear pore complex protein Nup153 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FBB38)

HSP 1 Score: 61.6 bits (148), Expect = 2.660e-8
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  205 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318
            GFGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  700 GFGDKFKAAAGSWDCDTCLVQNKPEATKCVACETPKPG 737          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A670IU33_PODMU (Nucleoporin 153 n=22 Tax=Lacertinae TaxID=162266 RepID=A0A670IU33_PODMU)

HSP 1 Score: 61.2 bits (147), Expect = 3.610e-8
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  205 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318
            GFGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  645 GFGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 682          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A8D2L1Y3_VARKO (Nucleoporin 153 n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2L1Y3_VARKO)

HSP 1 Score: 61.2 bits (147), Expect = 3.620e-8
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  205 GFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318
            GFGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  708 GFGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 745          
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Match: A0A8D0BIS9_9SAUR (Nucleoporin 153 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BIS9_9SAUR)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-7
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1
Query:  208 FGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAG 318
            FGD FKAAAG W CD CLV+N P ATKC +CETP  G
Sbjct:  722 FGDKFKAAAGTWDCDTCLVQNKPEATKCVACETPKPG 758          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128765 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835ZBV9_9STRA5.960e-67100.00RanBP2-type domain-containing protein (Fragment) n... [more]
A0A835Z233_9STRA6.520e-3978.17RanBP2-type domain-containing protein (Fragment) n... [more]
A0A835Z9Q0_9STRA9.800e-3174.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KBE2_FISSO4.730e-1741.18Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9W639_9STRA8.180e-1446.15Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2VZZ8_9STRA1.850e-1133.65Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
UPI00074FBB382.660e-871.05nuclear pore complex protein Nup153 n=1 Tax=Gekko ... [more]
A0A670IU33_PODMU3.610e-871.05Nucleoporin 153 n=22 Tax=Lacertinae TaxID=162266 R... [more]
A0A8D2L1Y3_VARKO3.620e-871.05Nucleoporin 153 n=2 Tax=Varanus komodoensis TaxID=... [more]
A0A8D0BIS9_9SAUR1.700e-770.27Nucleoporin 153 n=1 Tax=Salvator merianae TaxID=96... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:550972..551394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128765|gw1.20.4.1
Max annot lvl2836|Bacillariophyta
EggNOG OGs2DARA@1|root,2S5GD@2759|Eukaryota,2XGHJ@2836|Bacillariophyta
Evalue5.26e-17
Seed ortholog2850.Phatr43752
Hectar predicted targeting categoryother localisation
TranscriptId129087
TrackFilteredModels1
ProteinId128765
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128765gene_4103Tribonema minus UTEX_B_3156 geneContig_20 550972..551394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4103_1exon_4103_1Tribonema minus UTEX_B_3156 exonContig_20 550972..551394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4103CDS_4103Tribonema minus UTEX_B_3156 CDSContig_20 550972..551394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128765Trimin1|128765|gw1.20.4.1Tribonema minus UTEX_B_3156 polypeptideContig_20 550972..551394 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_20:550972..551394- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGGCACGACGTACAACGAGGAGGCGCACACCAAGACGCTGCAGCGGCT
GCAGGACGCCGCAGGCCGCGTCCACCTGGACGCGTTCACGGACTGGTACG
TAGAGTGGCTGCTCGGCGGCGACGATGAGGCGAGCAGCGATGGCGAGAGC
GAGGACGGCAGCAGCAGCGGCGGCGGCAGCGGCGGCGGCGCAGCAGCGGG
AGCGGGGTTTGGGGACATGTTCAAGGCGGCGGCGGGGGAGTGGAAGTGCG
ACGCGTGCCTCGTGCGCAATGCGCCGGGCGCCACCAAATGCGCGTCGTGT
GAGACGCCGGCGGCGGGCGCAGTCGCTGCCGCAGCGGCGGCTCCCGCTGT
GACGGCAGATGCAGCAGCTGCCGGACACGCGAGCACAGCTGGCGGATCCA
TCAGCCCATCTGGGTTCAGCTTT
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protein sequence of jgi.p|Trimin1|128765

>Trimin1|128765|gw1.20.4.1 ID=Trimin1|128765|gw1.20.4.1|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGES
EDGSSSGGGSGGGAAAGAGFGDMFKAAAGEWKCDACLVRNAPGATKCASC
ETPAAGAVAAAAAAPAVTADAAAAGHASTAGGSISPSGFSF
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mRNA from alignment at Contig_20:550972..551394-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_20:550972..551394- (Tribonema minus UTEX_B_3156 )
CTCGGCACGACGTACAACGAGGAGGCGCACACCAAGACGCTGCAGCGGCT GCAGGACGCCGCAGGCCGCGTCCACCTGGACGCGTTCACGGACTGGTACG TAGAGTGGCTGCTCGGCGGCGACGATGAGGCGAGCAGCGATGGCGAGAGC GAGGACGGCAGCAGCAGCGGCGGCGGCAGCGGCGGCGGCGCAGCAGCGGG AGCGGGGTTTGGGGACATGTTCAAGGCGGCGGCGGGGGAGTGGAAGTGCG ACGCGTGCCTCGTGCGCAATGCGCCGGGCGCCACCAAATGCGCGTCGTGT GAGACGCCGGCGGCGGGCGCAGTCGCTGCCGCAGCGGCGGCTCCCGCTGT GACGGCAGATGCAGCAGCTGCCGGACACGCGAGCACAGCTGGCGGATCCA TCAGCCCATCTGGGTTCAGCTTT
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Coding sequence (CDS) from alignment at Contig_20:550972..551394-

>mRNA_4103 ID=mRNA_4103|Name=jgi.p|Trimin1|128765|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_20:550972..551394- (Tribonema minus UTEX_B_3156 )
CTCGGCACGACGTACAACGAGGAGGCGCACACCAAGACGCTGCAGCGGCT
GCAGGACGCCGCAGGCCGCGTCCACCTGGACGCGTTCACGGACTGGTACG
TAGAGTGGCTGCTCGGCGGCGACGATGAGGCGAGCAGCGATGGCGAGAGC
GAGGACGGCAGCAGCAGCGGCGGCGGCAGCGGCGGCGGCGCAGCAGCGGG
AGCGGGGTTTGGGGACATGTTCAAGGCGGCGGCGGGGGAGTGGAAGTGCG
ACGCGTGCCTCGTGCGCAATGCGCCGGGCGCCACCAAATGCGCGTCGTGT
GAGACGCCGGCGGCGGGCGCAGTCGCTGCCGCAGCGGCGGCTCCCGCTGT
GACGGCAGATGCAGCAGCTGCCGGACACGCGAGCACAGCTGGCGGATCCA
TCAGCCCATCTGGGTTCAGCTTT
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