Trimin1|128735|gw1.46.1.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|128735
Unique Name	Trimin1\|128735\|gw1.46.1.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	140

Homology

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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YRH7_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.380e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 96
            NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD
Sbjct:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 96

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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YS91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS91_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 0

Query:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 94
            N ++ ALARADRA DAWH C+E +++GF+P   TV  ++ A   QRQ  M  R L +VRG+G +L+V  Y + ++AC  + S+E  + LY QM+
Sbjct:   74 NFHIDALARADRAMDAWHTCQENMQSGFRPGARTVQQVVCALARQRQYRMVPRFLELVRGTGFKLDVKGYNVVLKACTMAESLEITLNLYHQMV 167

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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YUD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.990e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 0

Query:    2 LYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 94
             ++ ALARA+RA DAWH C EY++AGF+P   TV  ++ A   +R   M LR L  +RG+G +L+V  Y I ++AC+ + S+E A+ LY QM+
Sbjct:   16 FHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMV 108

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|128735 vs. uniprot

BLAST of jgi.p|Trimin1|128735 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YRH7_9STRA	1.380e-60	100.00	PPR_long domain-containing protein (Fragment) n=1 ...	[more]
A0A835YS91_9STRA	1.110e-18	44.68	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YUD4_9STRA	3.990e-18	45.16	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 49..135 e-value: 1.2E-7 score: 31.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 68..102 e-value: 3.3E-8 score: 31.2 coord: 104..137 e-value: 1.2E-5 score: 23.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 66..100 score: 11.443655
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 101..135 score: 10.183105
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..140 e-value: 1.6E-28 score: 102.0
None	No IPR available	PANTHER	PTHR47941	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL	coord: 1..138

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:120897..121316 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|128735	mRNA_4564	Tribonema minus UTEX_B_3156	mRNA	Contig_46 120897..121316 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|128735|gw1.46.1.1 ID=Trimin1|128735|gw1.46.1.1|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSM
ALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQDGVEP
NIRIYDCLLRGCRHCADWRTALTMVTEMEQRGLKPDALAW

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033443	PPR_long
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf