mRNA_4564 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128735
Unique NamemRNA_4564
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YRH7_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.380e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 288
            NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD
Sbjct:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 96
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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YS91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS91_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 282
            N ++ ALARADRA DAWH C+E +++GF+P   TV  ++ A   QRQ  M  R L +VRG+G +L+V  Y + ++AC  + S+E  + LY QM+
Sbjct:   74 NFHIDALARADRAMDAWHTCQENMQSGFRPGARTVQQVVCALARQRQYRMVPRFLELVRGTGFKLDVKGYNVVLKACTMAESLEITLNLYHQMV 167
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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YUD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.990e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    4 LYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 282
             ++ ALARA+RA DAWH C EY++AGF+P   TV  ++ A   +R   M LR L  +RG+G +L+V  Y I ++AC+ + S+E A+ LY QM+
Sbjct:   16 FHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMV 108
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128735 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YRH7_9STRA1.380e-60100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835YS91_9STRA1.110e-1844.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUD4_9STRA3.990e-1845.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:120897..121316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128735|gw1.46.1.1
Hectar predicted targeting categoryother localisation
TranscriptId129057
TrackFilteredModels1
ProteinId128735
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128735gene_4564Tribonema minus UTEX_B_3156 geneContig_46 120897..121316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4564_1exon_4564_1Tribonema minus UTEX_B_3156 exonContig_46 120897..121316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4564CDS_4564Tribonema minus UTEX_B_3156 CDSContig_46 120897..121316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128735Trimin1|128735|gw1.46.1.1Tribonema minus UTEX_B_3156 polypeptideContig_46 120897..121316 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTG
GCACGCCTGTCGTGAGTACATCAAAGCCGGATTTCAGCCGCATGAACATA
CTGTGCACTATATTATCTTTGCGTTTACTACGCAGCGGCAGGGGTCAATG
GCGCTGCGCGTTCTGTCTGTTGTCAGAGGCAGCGGTGTGCAACTGAACGT
CTACATCTACTGCATTGCCATGAGGGCGTGTGCTTCTTCAGGCTCAATGG
AGTCCGCCATGGCGCTGTACCGCCAGATGATCCAGGATGGTGTCGAGCCC
AACATCAGGATCTACGATTGCCTGCTGAGAGGTTGTCGTCACTGTGCGGA
CTGGCGCACGGCGCTGACCATGGTTACTGAGATGGAGCAGCGAGGCTTGA
AACCGGACGCACTGGCTTGG
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protein sequence of jgi.p|Trimin1|128735

>Trimin1|128735|gw1.46.1.1 ID=Trimin1|128735|gw1.46.1.1|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSM
ALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQDGVEP
NIRIYDCLLRGCRHCADWRTALTMVTEMEQRGLKPDALAW
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mRNA from alignment at Contig_46:120897..121316-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )
AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTG
GCACGCCTGTCGTGAGTACATCAAAGCCGGATTTCAGCCGCATGAACATA
CTGTGCACTATATTATCTTTGCGTTTACTACGCAGCGGCAGGGGTCAATG
GCGCTGCGCGTTCTGTCTGTTGTCAGAGGCAGCGGTGTGCAACTGAACGT
CTACATCTACTGCATTGCCATGAGGGCGTGTGCTTCTTCAGGCTCAATGG
AGTCCGCCATGGCGCTGTACCGCCAGATGATCCAGGATGGTGTCGAGCCC
AACATCAGGATCTACGATTGCCTGCTGAGAGGTTGTCGTCACTGTGCGGA
CTGGCGCACGGCGCTGACCATGGTTACTGAGATGGAGCAGCGAGGCTTGA
AACCGGACGCACTGGCTTGG
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Coding sequence (CDS) from alignment at Contig_46:120897..121316-

>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )
AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTG
GCACGCCTGTCGTGAGTACATCAAAGCCGGATTTCAGCCGCATGAACATA
CTGTGCACTATATTATCTTTGCGTTTACTACGCAGCGGCAGGGGTCAATG
GCGCTGCGCGTTCTGTCTGTTGTCAGAGGCAGCGGTGTGCAACTGAACGT
CTACATCTACTGCATTGCCATGAGGGCGTGTGCTTCTTCAGGCTCAATGG
AGTCCGCCATGGCGCTGTACCGCCAGATGATCCAGGATGGTGTCGAGCCC
AACATCAGGATCTACGATTGCCTGCTGAGAGGTTGTCGTCACTGTGCGGA
CTGGCGCACGGCGCTGACCATGGTTACTGAGATGGAGCAGCGAGGCTTGA
AACCGGACGCACTGGCTTGG
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