Trimin1|1071|CE1070_210 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|1071
Unique NameTrimin1|1071|CE1070_210
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length228
Homology
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A835ZHA8_9STRA (Ribosomal protein L7/L12 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA8_9STRA)

HSP 1 Score: 386 bits (991), Expect = 1.520e-134
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
Query:    1 MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALHCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPXXXXXNLITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALHCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPXXXXXNLITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD
Sbjct:    1 MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALHCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPXXXXXNLITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A835Z8S1_9STRA (Ribosomal protein L7/L12 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.910e-42
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 0
Query:  108 VIDFIQFMKLYQRRTGLTDEMV--NSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            +ID  QF+ LYQ++TG+T++MV  N  G    XXXXXXXXXXXXX  P EEKS+FDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAK+LVEGAPK+LK+EMAKADAEKLLK FKD+GAEC MD
Sbjct:    1 MIDLKQFINLYQKKTGITEDMVSANMLGGXXXXXXXXXXXXXXXXXXPVEEKSVFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKELVEGAPKMLKKEMAKADAEKLLKVFKDLGAECVMD 122          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A7S2WIW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIW3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.260e-26
Identity = 73/144 (50.69%), Postives = 100/144 (69.44%), Query Frame = 0
Query:   92 PTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDE----MVNSYGQANGXXXXXXXXXXXXXEAPKEE----KSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            P+++V+ LCDQL EL+VI+  Q + L++ + GLT      M+ +      XX    XXXXXX ++ +EE    K  FD+KLV FD KAKIKVIKEVR +TGLGLKEAK+LVEGAPKI+K+E++KAD + L++  K  GAE  ++
Sbjct:   94 PSEKVQALCDQLCELNVIEMNQLVTLFKDKVGLTGADIMPMMGAXXXXXXXXAMGGXXXXXXDDSAEEEAAPEKEFFDLKLVGFDDKAKIKVIKEVRAITGLGLKEAKELVEGAPKIVKKEVSKADVDGLVEKLKAAGAEVALE 237          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A3M6VRL1_9STRA (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VRL1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.160e-25
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 0
Query:   93 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDE--MVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            T +V+ + DQ+LEL++I+  +     Q + G+ +    V   G A G             E PKEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEGAP  LK+++ K +A++L++  K +GA   ++
Sbjct:   50 TPKVQTVLDQILELNMIEIAELSHAIQTKFGIAESAFQVGMGGGAGGNAAPAA-------EEPKEEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVELE 179          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A8K1FI50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI50_PYTOL)

HSP 1 Score: 103 bits (258), Expect = 3.020e-24
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 0
Query:   93 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            T +V+++ DQ+LEL++++  +     Q++  + D    + G   G             E  KEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEG P +LK+++ K +AE L+   K++GA   M+
Sbjct:   47 TPKVQNVLDQILELNMVEIFELSGAIQQKFNIPDAAF-AMGAGGGAAAPAA-------EEVKEEKTQFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGVPSVLKKDVKKEEAEALIAQLKEVGAVLEME 173          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A6T7BM22_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7BM22_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 0
Query:   94 DEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEE-------KSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            + V+ L D+L  L+VI+  Q +K ++ + GLT   V   G   G       XXXXXX             K  FD+KL+ FD K+KIKVIKEVR ++GLGLKEAK+LVEGAPK++K+++AKADAE+L++  K +GAE  ++
Sbjct:   35 ENVQKLVDELCSLNVIEMNQLVKSFKDKVGLTGADVMPMGMPMGMPAMGAAXXXXXXXXXXXXXXXXXXXKEFFDLKLLGFDDKSKIKVIKEVRAISGLGLKEAKELVEGAPKVVKKDLAKADAEELIEKLKAVGAEVALE 175          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: K3W6J6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6J6_GLOUD)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 68/140 (48.57%), Postives = 95/140 (67.86%), Query Frame = 0
Query:   88 LITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            L T P  +V+ + DQ+L+L++++ ++     Q +  + D        A      XXXXXXXXX  PKEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEGAP +LK+++ K +AE L+   K++GA   ++
Sbjct:   45 LATSP--KVQAVLDQILDLNMMEIVELSSAIQEKFNIPDS-------AFSGGFGXXXXXXXXXXXPKEEKTQFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSVLKKDVKKDEAEALIAQLKEVGAVVELE 175          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A8J2X4X0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4X0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.820e-23
Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = 0
Query:   93 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEE---KSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            +++V+ +CD + +L+V++  +F+ L++ R GL+D  +        XXXXXXXXXXXXX         K  FD+KL SFDAKAKIKVIKEVR +TGLGLKEAK++VEGAP +LK+E+ K +AE+++K   ++GA   ++
Sbjct:   30 SEKVEKICDDVCQLNVLELKEFLDLFKERAGLSDADLQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFFDIKLTSFDAKAKIKVIKEVRALTGLGLKEAKEVVEGAPSVLKKEVKKDEAEEIVKKLTELGAAAELE 167          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A0P1AIP0_PLAHL (Ribosomal protein l7 l12 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIP0_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 6.680e-23
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 0
Query:   93 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            T +V+ + +Q+LEL++I+  +     Q + G++ E     G   G             +  KEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEGAP  LK+++ K +A++L++  K +GA   ++
Sbjct:   46 TPKVQTVLNQILELNMIEIAELSHAIQAKFGIS-ESAFQVGMGGGGTGAVSAA-----QEVKEEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVELE 174          
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A2D4BXQ9_PYTIN (50S ribosomal protein L7/L12, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXQ9_PYTIN)

HSP 1 Score: 100 bits (248), Expect = 8.480e-23
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 0
Query:   95 EVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
            +VK + DQ++EL++I+  +     Q++  + D    ++  A GXXXXXXXXXX      KEEK+ FDVKL SFDAK KIKVIKE+R +TGLGLKEAK+LVEG P +LK+++ K +AE L+   K++GA   M+
Sbjct:   46 KVKSVLDQIVELNMIEIFELSSAIQQKFNIPDA---AFSMAAGXXXXXXXXXXA-----KEEKTQFDVKLASFDAKNKIKVIKEIRAITGLGLKEAKELVEGVPSVLKKDLKKDEAEALIAQLKEVGAVGEME 170          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHA8_9STRA1.520e-134100.00Ribosomal protein L7/L12 C-terminal domain-contain... [more]
A0A835Z8S1_9STRA1.910e-4277.05Ribosomal protein L7/L12 C-terminal domain-contain... [more]
A0A7S2WIW3_9STRA2.260e-2650.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3M6VRL1_9STRA1.160e-2545.26Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A8K1FI50_PYTOL3.020e-2443.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6T7BM22_9STRA1.250e-2346.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3W6J6_GLOUD1.250e-2348.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8J2X4X0_9STRA2.820e-2348.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0P1AIP0_PLAHL6.680e-2342.96Ribosomal protein l7 l12 n=1 Tax=Plasmopara halste... [more]
A0A2D4BXQ9_PYTIN8.480e-2350.3850S ribosomal protein L7/L12, putative n=1 Tax=Pyt... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 160..226
e-value: 3.6E-24
score: 84.9
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 153..226
e-value: 2.8E-23
score: 83.8
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 155..226
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 98..225
e-value: 3.3E-25
score: 86.9
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 63..227
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 93..227
score: 16.64076
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 154..226
e-value: 4.22429E-32
score: 111.864
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1219105..1222917 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|1071mRNA_1102Tribonema minus UTEX_B_3156 mRNAContig_1 1219032..1223132 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|1071|CE1070_210 ID=Trimin1|1071|CE1070_210|Name=jgi.p|Trimin1|1071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=228bp
MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGAL
HCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPPPPPPNLITGPTDEVKDLC
DQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGGGGGGGGGAAAAA
EAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKI
LKREMAKADAEKLLKAFKDIGAECTMD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR000206Ribosomal_L7/12