mRNA_1102 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A835ZHA8_9STRA (Ribosomal protein L7/L12 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA8_9STRA) HSP 1 Score: 388 bits (996), Expect = 1.060e-133 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 3 Query: 216 MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALHCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPXXXXXNLITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALHCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPXXXXXNLITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD
Sbjct: 1 MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALHCVRRHLCSEPAQTKAEEKPEEQHNAFPDEPXXXXXNLITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 227
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A835Z8S1_9STRA (Ribosomal protein L7/L12 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S1_9STRA) HSP 1 Score: 148 bits (373), Expect = 6.250e-41 Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 3 Query: 537 VIDFIQFMKLYQRRTGLTDEMV--NSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
+ID QF+ LYQ++TG+T++MV N G XXXXXXXXXXXXX P EEKS+FDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAK+LVEGAPK+LK+EMAKADAEKLLK FKD+GAEC MD
Sbjct: 1 MIDLKQFINLYQKKTGITEDMVSANMLGGXXXXXXXXXXXXXXXXXXPVEEKSVFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKELVEGAPKMLKKEMAKADAEKLLKVFKDLGAECVMD 122
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A7S2WIW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIW3_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.430e-25 Identity = 73/144 (50.69%), Postives = 100/144 (69.44%), Query Frame = 3 Query: 489 PTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDE----MVNSYGQANGXXXXXXXXXXXXXEAPKEE----KSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
P+++V+ LCDQL EL+VI+ Q + L++ + GLT M+ + XX XXXXXX ++ +EE K FD+KLV FD KAKIKVIKEVR +TGLGLKEAK+LVEGAPKI+K+E++KAD + L++ K GAE ++
Sbjct: 94 PSEKVQALCDQLCELNVIEMNQLVTLFKDKVGLTGADIMPMMGAXXXXXXXXAMGGXXXXXXDDSAEEEAAPEKEFFDLKLVGFDDKAKIKVIKEVRAITGLGLKEAKELVEGAPKIVKKEVSKADVDGLVEKLKAAGAEVALE 237
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A3M6VRL1_9STRA (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VRL1_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.130e-24 Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 3 Query: 492 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDE--MVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGA 881
T +V+ + DQ+LEL++I+ + Q + G+ + V G A G E PKEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEGAP LK+++ K +A++L++ K +GA
Sbjct: 50 TPKVQTVLDQILELNMIEIAELSHAIQTKFGIAESAFQVGMGGGAGGNAAPAA-------EEPKEEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGA 174
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A8K1FI50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI50_PYTOL) HSP 1 Score: 103 bits (256), Expect = 5.160e-23 Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 3 Query: 492 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
T +V+++ DQ+LEL++++ + Q++ + D + G G E KEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEG P +LK+++ K +AE L+ K++GA M+
Sbjct: 47 TPKVQNVLDQILELNMVEIFELSGAIQQKFNIPDAAF-AMGAGGGAAAPAA-------EEVKEEKTQFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGVPSVLKKDVKKEEAEALIAQLKEVGAVLEME 173
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A6T7BM22_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7BM22_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.060e-22 Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 3 Query: 495 DEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEE-------KSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
+ V+ L D+L L+VI+ Q +K ++ + GLT V G G XXXXXX K FD+KL+ FD K+KIKVIKEVR ++GLGLKEAK+LVEGAPK++K+++AKADAE+L++ K +GAE ++
Sbjct: 35 ENVQKLVDELCSLNVIEMNQLVKSFKDKVGLTGADVMPMGMPMGMPAMGAAXXXXXXXXXXXXXXXXXXXKEFFDLKLLGFDDKSKIKVIKEVRAISGLGLKEAKELVEGAPKVVKKDLAKADAEELIEKLKAVGAEVALE 175
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: K3W6J6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6J6_GLOUD) HSP 1 Score: 101 bits (252), Expect = 2.060e-22 Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = 3 Query: 477 LITGPTDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGA 881
L T P +V+ + DQ+L+L++++ ++ Q + + D A XXXXXXXXX PKEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEGAP +LK+++ K +AE L+ K++GA
Sbjct: 45 LATSP--KVQAVLDQILDLNMMEIVELSSAIQEKFNIPDS-------AFSGGFGXXXXXXXXXXXPKEEKTQFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSVLKKDVKKDEAEALIAQLKEVGA 170
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A8J2X4X0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4X0_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.560e-22 Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = 3 Query: 492 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEE---KSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
+++V+ +CD + +L+V++ +F+ L++ R GL+D + XXXXXXXXXXXXX K FD+KL SFDAKAKIKVIKEVR +TGLGLKEAK++VEGAP +LK+E+ K +AE+++K ++GA ++
Sbjct: 30 SEKVEKICDDVCQLNVLELKEFLDLFKERAGLSDADLQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFFDIKLTSFDAKAKIKVIKEVRALTGLGLKEAKEVVEGAPSVLKKEVKKDEAEEIVKKLTELGAAAELE 167
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A0P1AIP0_PLAHL (Ribosomal protein l7 l12 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIP0_PLAHL) HSP 1 Score: 99.8 bits (247), Expect = 1.060e-21 Identity = 58/130 (44.62%), Postives = 84/130 (64.62%), Query Frame = 3 Query: 492 TDEVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGA 881
T +V+ + +Q+LEL++I+ + Q + G++ E G G + KEEK+ FDVKL SFDAK+KIKVIKEVR +TGLGLKEAK+LVEGAP LK+++ K +A++L++ K +GA
Sbjct: 46 TPKVQTVLNQILELNMIEIAELSHAIQAKFGIS-ESAFQVGMGGGGTGAVSAA-----QEVKEEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGA 169
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Match: A0A2D4BXQ9_PYTIN (50S ribosomal protein L7/L12, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXQ9_PYTIN) HSP 1 Score: 99.4 bits (246), Expect = 1.340e-21 Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 3 Query: 498 EVKDLCDQLLELSVIDFIQFMKLYQRRTGLTDEMVNSYGQANGXXXXXXXXXXXXXEAPKEEKSIFDVKLVSFDAKAKIKVIKEVRTVTGLGLKEAKDLVEGAPKILKREMAKADAEKLLKAFKDIGAECTMD 896
+VK + DQ++EL++I+ + Q++ + D ++ A GXXXXXXXXXX KEEK+ FDVKL SFDAK KIKVIKE+R +TGLGLKEAK+LVEG P +LK+++ K +AE L+ K++GA M+
Sbjct: 46 KVKSVLDQIVELNMIEIFELSSAIQQKFNIPDA---AFSMAAGXXXXXXXXXXA-----KEEKTQFDVKLASFDAKNKIKVIKEIRAITGLGLKEAKELVEGVPSVLKKDLKKDEAEALIAQLKEVGAVGEME 170 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|1071 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1102 ID=mRNA_1102|Name=jgi.p|Trimin1|1071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=972bp|location=Sequence derived from alignment at Contig_1:1219032..1223132- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGTAGAGTGCTTCGGAGCTAGATTGAGTCGAGAGCATTGCACCCGCGAGback to top protein sequence of jgi.p|Trimin1|1071 >Trimin1|1071|CE1070_210 ID=Trimin1|1071|CE1070_210|Name=jgi.p|Trimin1|1071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=228bp MASNVAAAARRAALSAVARPLLRPRAASSTQRHFAQAQHRLREPIGSGALback to top mRNA from alignment at Contig_1:1219032..1223132- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1102 ID=mRNA_1102|Name=jgi.p|Trimin1|1071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4101bp|location=Sequence derived from alignment at Contig_1:1219032..1223132- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:1219032..1223132- >mRNA_1102 ID=mRNA_1102|Name=jgi.p|Trimin1|1071|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=684bp|location=Sequence derived from alignment at Contig_1:1219032..1223132- (Tribonema minus UTEX_B_3156 )back to top |