mRNA_9845 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA) HSP 1 Score: 462 bits (1188), Expect = 5.990e-163 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 3
Query: 63 MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRHTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 788
MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRHTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG
Sbjct: 1 MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRHTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 242
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI) HSP 1 Score: 239 bits (610), Expect = 4.280e-75 Identity = 125/179 (69.83%), Postives = 142/179 (79.33%), Query Frame = 3
Query: 252 DDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 788
DDLL++P FLTKK+EVL KQ+AK EEEI+AAN EADKEWEEWGPQI+RLE EF ++ RMLNDTMEA AKVK LK IL V+DNF RASQAI T+GE AVV YYK +Y M VF LGM+P+ TVG PFDYNLHEAVMRQ S+E +ED+V E TKGF VG LIRPAMVAVS+G
Sbjct: 68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQ-SSEFDEDIVCLELTKGFMVGKELIRPAMVAVSTG 245
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.180e-57 Identity = 97/180 (53.89%), Postives = 129/180 (71.67%), Query Frame = 3
Query: 249 VDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 788
VDDLL +PAFL KK+E L K + K +E+I A+AEA KEWEEWGPQI R + E+ L+ RM+N TMEA AKVK LK +L DNF+RA A K Q++ E+A + Y +++ ++ VF +LGM+ +PTVG PFD+NLH AVM+QPS E+ ED + E+ KG+ V G +IRPAMV VS+G
Sbjct: 118 VDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSAG 297
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI) HSP 1 Score: 187 bits (476), Expect = 1.900e-54 Identity = 97/179 (54.19%), Postives = 128/179 (71.51%), Query Frame = 3
Query: 246 DVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 782
+VDDLL S AFL KKVE+L+KQ+ T+ +I A A+AD++W EWGPQ+QRLE EF+ LK R +A N+ K +A+ IL V DNFERA+ AI A+TDGE+AVVAYYK Y+ M + L + V T+G PFDYN+H A+MR+ + E ED+V + F KG+ VG TL+RPAMVAV+
Sbjct: 100 EVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVA 278
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA) HSP 1 Score: 178 bits (451), Expect = 4.020e-51 Identity = 91/177 (51.41%), Postives = 124/177 (70.06%), Query Frame = 3
Query: 252 DDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 782
DD+L SPAFL +KVEVL+ +AKTEE++ AA + EEWGPQ++ LE E+T ++QRM E ++AKV+ +K IL + DNF+RAS I A+T+ ++A+ A YK Y + FKE+G+ V TVG FDY LH+AVM+ P +E+EE V QEF KGF +G +LIRPAMVAV+
Sbjct: 71 DDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.090e-47 Identity = 87/185 (47.03%), Postives = 122/185 (65.95%), Query Frame = 3
Query: 228 AADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 782
+ D D +D+L SPAFL +K+EVL+ +A +E++AAA + EEWGPQ++ L+ E+ ++QRM E ++AKV+ +K +L + DNF+RAS I A+TD EK + A YK Y + FK++G+ V TVG FDY LH+AVM+ P E+EE V QEF KGF +G LIRPAMVAV+
Sbjct: 99 SGDASADSNDILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA) HSP 1 Score: 165 bits (417), Expect = 4.860e-46 Identity = 86/179 (48.04%), Postives = 121/179 (67.60%), Query Frame = 3
Query: 246 DVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 782
DV+D+L SPAFL +K+EVL+ +A TEEE+ AA + EEWGPQI+ L+ E+T ++QRM ++AKV+ +K IL + DNF+RAS I A+T+ E+ + A YK Y + F E+G+ V T+G FDY LH+AVM+ P E+EE +V +EF KGF + +LIRPAMVAV+
Sbjct: 69 DVNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A1Z5KT30_FISSO (GrpE protein homolog n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT30_FISSO) HSP 1 Score: 154 bits (389), Expect = 2.590e-42 Identity = 80/177 (45.20%), Postives = 116/177 (65.54%), Query Frame = 3
Query: 252 DDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 782
+D+L SPAFL +K EVL+ L K E+ +AAA ++ EWGPQ+ L+TE+ +++RM + + A V+ + +L V DNF+RA A++ D E A+ A YKG Y M F E+G+E +PTVG FDY +H+AVM++PS E+EE +V +EF KGF G +L+R AMVAV+
Sbjct: 35 NDILNSPAFLQRKFEVLQTDLQKAEDALAAAQQRLEEGKAEWGPQLADLQTEYQNIQKRMNEQSKGGDSMATVQVARNMLNVLDNFDRAFGAVQPSNDEELAIEAEYKGTYQMMLDAFAEMGVEEIPTVGVEFDYQVHQAVMQKPSDEYEEGIVCEEFQKGFKCGDSLVRAAMVAVA 211
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.870e-40 Identity = 79/177 (44.63%), Postives = 116/177 (65.54%), Query Frame = 3
Query: 255 DLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 785
D+L SPAFL +K++VLK +AK EE IAAA D+ EW Q+ L+ E+ ++ R+ + + G+ A V+ + L V DNF+RA I A+TD +K + Y+ YN + T+ +LG+E V TVG FDY +H+AVM++PS E+EE +V +EF KGF +G TLIR AMV+V++
Sbjct: 66 DILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S1UFZ6_9STRA (GrpE protein homolog n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFZ6_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.190e-40 Identity = 82/184 (44.57%), Postives = 112/184 (60.87%), Query Frame = 3
Query: 240 GKD-VDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 788
GKD VDD+L +P FL +K+EVL+++ + +E++ A+ ++W +I RL EF L++R + EA AKV+ LK +LTV DNF RA + + AVV Y VY+ + VF+ELGM + TVG PFD N EAVM+QPS E EE V QE+ GF VG +RPA V VS+G
Sbjct: 78 GKDKVDDILNTPIFLKRKLEVLEREAGELKEQLDTVKAQTADGEDDWQEKIDRLNKEFEMLRERARGEMGEASTNAKVEVLKEVLTVTDNFVRAKATVDTSSPSAGAVVERYDAVYDNIQAVFEELGMTSITTVGEPFDPNFMEAVMQQPSDEFEEGSVLQEYQAGFVVGDKTVRPAFVVVSAG 261 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9845 ID=mRNA_9845|Name=jgi.p|Trimin1|352715|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=928bp|location=Sequence derived from alignment at Contig_129:217201..220196- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTGGCTGCCTAGGACCCGTGCGCCACCGTTGCTGCGAGAATTCTCTCACback to top protein sequence of jgi.p|Trimin1|352715 >Trimin1|352715|estExt_Genemark1.C_Ctg_1290026 ID=Trimin1|352715|estExt_Genemark1.C_Ctg_1290026|Name=jgi.p|Trimin1|352715|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRback to top mRNA from alignment at Contig_129:217201..220196- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9845 ID=mRNA_9845|Name=jgi.p|Trimin1|352715|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2996bp|location=Sequence derived from alignment at Contig_129:217201..220196- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_129:217201..220196- >mRNA_9845 ID=mRNA_9845|Name=jgi.p|Trimin1|352715|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_129:217201..220196- (Tribonema minus UTEX_B_3156 )back to top |