Trimin1|352715|estExt_Genemark1.C_Ctg_1290026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352715
Unique NameTrimin1|352715|estExt_Genemark1.C_Ctg_1290026
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length243
Homology
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA)

HSP 1 Score: 459 bits (1182), Expect = 3.700e-163
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRHTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 242
            MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRHTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG
Sbjct:    1 MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQRHTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 242          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI)

HSP 1 Score: 238 bits (608), Expect = 8.680e-76
Identity = 125/179 (69.83%), Postives = 142/179 (79.33%), Query Frame = 0
Query:   64 DDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 242
            DDLL++P FLTKK+EVL KQ+AK EEEI+AAN EADKEWEEWGPQI+RLE EF  ++ RMLNDTMEA   AKVK LK IL V+DNF RASQAI   T+GE AVV YYK +Y  M  VF  LGM+P+ TVG PFDYNLHEAVMRQ S+E +ED+V  E TKGF VG  LIRPAMVAVS+G
Sbjct:   68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQ-SSEFDEDIVCLELTKGFMVGKELIRPAMVAVSTG 245          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.730e-58
Identity = 97/180 (53.89%), Postives = 129/180 (71.67%), Query Frame = 0
Query:   63 VDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 242
            VDDLL +PAFL KK+E L K + K +E+I  A+AEA KEWEEWGPQI R + E+  L+ RM+N TMEA   AKVK LK +L   DNF+RA  A K Q++ E+A +  Y  +++ ++ VF +LGM+ +PTVG PFD+NLH AVM+QPS E+ ED +  E+ KG+ V G +IRPAMV VS+G
Sbjct:  118 VDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSAG 297          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 6.430e-55
Identity = 97/179 (54.19%), Postives = 128/179 (71.51%), Query Frame = 0
Query:   62 DVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 240
            +VDDLL S AFL KKVE+L+KQ+  T+ +I  A A+AD++W EWGPQ+QRLE EF+ LK R      +A N+ K +A+  IL V DNFERA+ AI A+TDGE+AVVAYYK  Y+ M    + L +  V T+G PFDYN+H A+MR+ + E  ED+V + F KG+ VG TL+RPAMVAV+
Sbjct:  100 EVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVA 278          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.420e-51
Identity = 91/177 (51.41%), Postives = 124/177 (70.06%), Query Frame = 0
Query:   64 DDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 240
            DD+L SPAFL +KVEVL+  +AKTEE++ AA    +   EEWGPQ++ LE E+T ++QRM     E  ++AKV+ +K IL + DNF+RAS  I A+T+ ++A+ A YK  Y  +   FKE+G+  V TVG  FDY LH+AVM+ P +E+EE  V QEF KGF +G +LIRPAMVAV+
Sbjct:   71 DDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.970e-48
Identity = 87/185 (47.03%), Postives = 122/185 (65.95%), Query Frame = 0
Query:   56 AADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 240
            + D   D +D+L SPAFL +K+EVL+  +A  +E++AAA    +   EEWGPQ++ L+ E+  ++QRM     E  ++AKV+ +K +L + DNF+RAS  I A+TD EK + A YK  Y  +   FK++G+  V TVG  FDY LH+AVM+ P  E+EE  V QEF KGF +G  LIRPAMVAV+
Sbjct:   99 SGDASADSNDILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.830e-46
Identity = 86/179 (48.04%), Postives = 121/179 (67.60%), Query Frame = 0
Query:   62 DVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 240
            DV+D+L SPAFL +K+EVL+  +A TEEE+ AA    +   EEWGPQI+ L+ E+T ++QRM        ++AKV+ +K IL + DNF+RAS  I A+T+ E+ + A YK  Y  +   F E+G+  V T+G  FDY LH+AVM+ P  E+EE +V +EF KGF +  +LIRPAMVAV+
Sbjct:   69 DVNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A1Z5KT30_FISSO (GrpE protein homolog n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT30_FISSO)

HSP 1 Score: 153 bits (386), Expect = 1.040e-42
Identity = 80/177 (45.20%), Postives = 116/177 (65.54%), Query Frame = 0
Query:   64 DDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVS 240
            +D+L SPAFL +K EVL+  L K E+ +AAA    ++   EWGPQ+  L+TE+  +++RM   +    + A V+  + +L V DNF+RA  A++   D E A+ A YKG Y  M   F E+G+E +PTVG  FDY +H+AVM++PS E+EE +V +EF KGF  G +L+R AMVAV+
Sbjct:   35 NDILNSPAFLQRKFEVLQTDLQKAEDALAAAQQRLEEGKAEWGPQLADLQTEYQNIQKRMNEQSKGGDSMATVQVARNMLNVLDNFDRAFGAVQPSNDEELAIEAEYKGTYQMMLDAFAEMGVEEIPTVGVEFDYQVHQAVMQKPSDEYEEGIVCEEFQKGFKCGDSLVRAAMVAVA 211          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 7.650e-41
Identity = 79/177 (44.63%), Postives = 116/177 (65.54%), Query Frame = 0
Query:   65 DLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 241
            D+L SPAFL +K++VLK  +AK EE IAAA    D+   EW  Q+  L+ E+  ++ R+ +   + G+ A V+  +  L V DNF+RA   I A+TD +K +   Y+  YN + T+  +LG+E V TVG  FDY +H+AVM++PS E+EE +V +EF KGF +G TLIR AMV+V++
Sbjct:   66 DILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242          
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Match: A0A7S1UFZ6_9STRA (GrpE protein homolog n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFZ6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.800e-40
Identity = 82/184 (44.57%), Postives = 112/184 (60.87%), Query Frame = 0
Query:   60 GKD-VDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG 242
            GKD VDD+L +P FL +K+EVL+++  + +E++    A+     ++W  +I RL  EF  L++R   +  EA   AKV+ LK +LTV DNF RA   +   +    AVV  Y  VY+ +  VF+ELGM  + TVG PFD N  EAVM+QPS E EE  V QE+  GF VG   +RPA V VS+G
Sbjct:   78 GKDKVDDILNTPIFLKRKLEVLEREAGELKEQLDTVKAQTADGEDDWQEKIDRLNKEFEMLRERARGEMGEASTNAKVEVLKEVLTVTDNFVRAKATVDTSSPSAGAVVERYDAVYDNIQAVFEELGMTSITTVGEPFDPNFMEAVMQQPSDEFEEGSVLQEYQAGFVVGDKTVRPAFVVVSAG 261          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352715 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCF7_9STRA3.700e-163100.00GrpE protein homolog n=1 Tax=Tribonema minus TaxID... [more]
H6WB81_VAULI8.680e-7669.83GrpE protein homolog n=1 Tax=Vaucheria litorea Tax... [more]
A0A7S2V1T8_9STRA2.730e-5853.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LBD7_ECTSI6.430e-5554.19GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A448ZSA7_9STRA1.420e-5151.41GrpE protein homolog n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S0UHW3_9STRA3.970e-4847.03GrpE protein homolog n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S4AM71_9STRA1.830e-4648.04GrpE protein homolog n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5KT30_FISSO1.040e-4245.20GrpE protein homolog n=1 Tax=Fistulifera solaris T... [more]
A0A7S3L4W1_9STRA7.650e-4144.63GrpE protein homolog n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1UFZ6_9STRA1.800e-4044.57GrpE protein homolog n=1 Tax=Phaeomonas parva TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..104
IPR000740GrpE nucleotide exchange factorPRINTSPR00773GRPEPROTEINcoord: 138..153
score: 39.65
coord: 220..239
score: 42.5
coord: 110..126
score: 24.63
coord: 193..208
score: 47.07
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 78..240
e-value: 1.2E-35
score: 122.6
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 23..241
IPR000740GrpE nucleotide exchange factorPROSITEPS01071GRPEcoord: 196..239
IPR000740GrpE nucleotide exchange factorHAMAPMF_01151GrpEcoord: 38..241
score: 13.469398
IPR000740GrpE nucleotide exchange factorCDDcd00446GrpEcoord: 100..239
e-value: 2.84797E-34
score: 117.992
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 72..183
e-value: 3.3E-11
score: 44.9
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 89..185
IPR009012GrpE nucleotide exchange factor, headGENE3D2.30.22.10Head domain of nucleotide exchange factor GrpEcoord: 185..240
e-value: 4.7E-17
score: 63.7
IPR009012GrpE nucleotide exchange factor, headSUPERFAMILY51064Head domain of nucleotide exchange factor GrpEcoord: 187..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:217338..220033 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352715mRNA_9845Tribonema minus UTEX_B_3156 mRNAContig_129 217201..220196 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352715|estExt_Genemark1.C_Ctg_1290026 ID=Trimin1|352715|estExt_Genemark1.C_Ctg_1290026|Name=jgi.p|Trimin1|352715|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MAPTCSQRLGCAALLLALLAAGVQSFVSSTARLQTGRQSQQAVSRTQQQR
HTIYAAADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADK
EWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFE
RASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNL
HEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000740GrpE
IPR013805GrpE_coiled_coil
IPR009012GrpE_head