mRNA_9838 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145214
Unique NamemRNA_9838
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A836CM62_9STRA (Putative 30S ribosomal protein S16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM62_9STRA)

HSP 1 Score: 220 bits (560), Expect = 8.570e-73
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAELLA 318
            MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAELLA
Sbjct:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAELLA 106
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A7S1H3T9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3T9_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.660e-44
Identity = 67/101 (66.34%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKER 303
            MVVRLRLQRFG K+ PFYR+VAAD RAPRDGKF+E+VGTYNPI ++DG KE+R    R++YWL VGA+PS+RVAW+LG+F ILP  P+R   Q  +PKK+R
Sbjct:    1 MVVRLRLQRFGRKHLPFYRMVAADHRAPRDGKFLEVVGTYNPIASKDGIKEIRLKTDRLKYWLAVGAQPSDRVAWILGKFGILPPPPQRYSPQRMIPKKDR 101
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A7S3PWJ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWJ7_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.780e-44
Identity = 65/103 (63.11%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAE 309
            M VRLRLQRFG  ++PFYR+VAAD+RAPRDGKF+EIVGTYNPI T++G KE+R    R++YWLGVGA+PS+RV+W+LG+F +LP  P R+  Q  +PKK+R +
Sbjct:    1 MPVRLRLQRFGRTHRPFYRMVAADSRAPRDGKFLEIVGTYNPIATKEGIKEIRLKTDRLKYWLGVGAQPSDRVSWILGKFGVLPPPPPRVSLQKMIPKKDRED 103
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A7S1VML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VML7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.320e-43
Identity = 68/101 (67.33%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKER 303
            MVVRLRLQRFG +N+PFYR+VAA+ RAPRDGKF+EI+GTYNPI TR G KE+R    RI+YWL VGA+PS+RV+W+LG+F ILP  P R  TQ    KKER
Sbjct:    1 MVVRLRLQRFGKRNRPFYRMVAANVRAPRDGKFLEIIGTYNPIATRAGLKEIRLKTDRIKYWLSVGAQPSDRVSWILGKFGILPPPPPRFSTQAMFTKKER 101
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: K8ZAJ3_NANGC (Small subunit ribosomal protein S16 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAJ3_NANGC)

HSP 1 Score: 147 bits (371), Expect = 4.570e-43
Identity = 66/105 (62.86%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAELL 315
            MVVRLRLQRFG  ++PFYR+VAAD+RAPRDG+FIE +G+Y+PI ++DG KEVR +  RI+YWL VGA+PS+RVAWL+ ++N+LP  P R  T  HLP+KER E++
Sbjct:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKEVV 105
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A7S0C1J3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1J3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.260e-43
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAE 309
            MVVRLRLQRFG  + PFYR+VAA+ARAPRDGKF+EIVG+YNPIP + G KEVR    R+ YW+ VGA+PS+RVAW+LG+F +LP  P +   Q  +PKK+R E
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAANARAPRDGKFLEIVGSYNPIPNKHGIKEVRLKTDRLRYWISVGAQPSDRVAWVLGKFGVLPPAPPKFSPQKMIPKKDRPE 103
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A7R9W8Z9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8Z9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.630e-43
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    7 VRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAE 309
            VRLRLQRFG K+ PFYR+VAA+ARAPRDGKF+EIVGTYNPI  + G KE+R    R++YWL VGA+PS+RVAW+LG+F ILP  P R   QN +PKK+R E
Sbjct:    1 VRLRLQRFGKKHCPFYRMVAANARAPRDGKFLEIVGTYNPIANKHGIKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGILPPPPPRYSPQNMIPKKDREE 101
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A448ZHY9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHY9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.990e-42
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKERAE 309
            MVVRLRLQRFG  + PFYR+VAA+ARAPRDGKF+EIVGTYNPI  RDG KE+R    R++YWLGVGA+PS+RVAW+LG+F ILP  P R   +    KK   E
Sbjct:    1 MVVRLRLQRFGRTHAPFYRMVAANARAPRDGKFLEIVGTYNPIANRDGMKEIRLKEDRLKYWLGVGAQPSDRVAWILGKFGILPPPPXRFNPEKSRVKKAEEE 103
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A8K1FHQ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHQ9_PYTOL)

HSP 1 Score: 141 bits (356), Expect = 1.040e-41
Identity = 66/101 (65.35%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKER 303
            MVVRLRL R+G K+ PFYR+VAADARAPRDGK +EIVGT+NPI   DG KE+R N +R+ YW+ VGA+PS+RVA LLG  NILP+ P R +T+  +PKKER
Sbjct:    1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLEIVGTFNPIAATDGVKELRVNSERVRYWISVGAQPSDRVAHLLGMANILPMPPTRQYTKKSVPKKER 101
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BLAST of jgi.p|Trimin1|145214 vs. uniprot
Match: A0A7S1ZG56_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG56_TRICV)

HSP 1 Score: 141 bits (355), Expect = 1.560e-41
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKER 303
            MVVRLRLQRFG K  PFYR+VAA++RAPRDGKF EIVGTYNPI    G KE+R    R+ YWL VGA+PS+RVAW+LG+F ILP  P R   Q  +PKK+R
Sbjct:    1 MVVRLRLQRFGQKKLPFYRMVAANSRAPRDGKFFEIVGTYNPIANASGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGILPPPPPRYSPQRMIPKKDR 101
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145214 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM62_9STRA8.570e-73100.00Putative 30S ribosomal protein S16 n=1 Tax=Tribone... [more]
A0A7S1H3T9_9STRA2.660e-4466.34Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3PWJ7_9STRA3.780e-4463.11Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1VML7_9STRA2.320e-4367.33Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
K8ZAJ3_NANGC4.570e-4362.86Small subunit ribosomal protein S16 n=3 Tax=Monodo... [more]
A0A7S0C1J3_9STRA6.260e-4363.11Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9W8Z9_9STRA8.630e-4366.34Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A448ZHY9_9STRA4.990e-4265.05Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A8K1FHQ9_PYTOL1.040e-4165.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1ZG56_TRICV1.560e-4165.35Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:192834..193588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145214|gw1.129.53.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
KEGG ModuleM00178
KEGG Pathwayko03010,map03010
KEGG koko:K02959
DescriptionRibosomal protein S16
COG categoryJ
Max annot lvl4776|Peronosporales
EggNOG OGsCOG0228@1|root,KOG3419@2759|Eukaryota,3QFWK@4776|Peronosporales
Evalue4.87e-42
Seed ortholog325452.fgenesh_scip_prom.46568.10286
Hectar predicted targeting categorymitochondrion
TranscriptId145536
TrackFilteredModels1
ProteinId145214
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145214gene_9838Tribonema minus UTEX_B_3156 geneContig_129 192834..193588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145214Trimin1|145214|gw1.129.53.1Tribonema minus UTEX_B_3156 polypeptideContig_129 192834..193588 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9838_3exon_9838_3Tribonema minus UTEX_B_3156 exonContig_129 192834..192884 -
exon_9838_2exon_9838_2Tribonema minus UTEX_B_3156 exonContig_129 193205..193363 -
exon_9838_1exon_9838_1Tribonema minus UTEX_B_3156 exonContig_129 193481..193588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9838CDS_9838Tribonema minus UTEX_B_3156 CDSContig_129 193481..193588 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9838 ID=mRNA_9838|Name=jgi.p|Trimin1|145214|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_129:192834..193588- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTTCGCCTTCGTTTGCAACGATTTGGCCACAAGAATCAGCCATT
CTATCGAGTCGTCGCCGCAGACGCCCGTGCCCCACGAGATGGCAAATTCA
TCGAGATCGTCGGCACTTACAATCCGATCCCCACCAGGGATGGCTACAAG
GAAGTCAGGTTCAACAGGCAACGGATAGAGTACTGGCTAGGCGTCGGAGC
GGAGCCCTCGGAGCGTGTCGCATGGCTGCTGGGACAATTCAATATATTGC
CACTGGTACCACGACGAATATTCACGCAAAACCACTTGCCAAAGAAGGAG
CGCGCGGAGCTGCTTGCC
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protein sequence of jgi.p|Trimin1|145214

>Trimin1|145214|gw1.129.53.1 ID=Trimin1|145214|gw1.129.53.1|Name=jgi.p|Trimin1|145214|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYK
EVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKE
RAELLA
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mRNA from alignment at Contig_129:192834..193588-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9838 ID=mRNA_9838|Name=jgi.p|Trimin1|145214|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=755bp|location=Sequence derived from alignment at Contig_129:192834..193588- (Tribonema minus UTEX_B_3156 )
ATGGTGGTTCGCCTTCGTTTGCAACGATTTGGCCACAAGAATCAGCCATT
CTATCGAGTCGTCGCCGCAGACGCCCGTGCCCCACGAGATGGCAAATTCA
TCGAGATCGTGAGTGCGCAGCAGCATGCCAAACATGATTTGCAATCCACA
CTGCCAATAGCCATACATCGTGTACCGGTCTTCATGACGCTGTCGCTCAT
CCTCTATGTTTTTTCGCATCTGCAGGTCGGCACTTACAATCCGATCCCCA
CCAGGGATGGCTACAAGGAAGTCAGGTTCAACAGGCAACGGATAGAGTAC
TGGCTAGGCGTCGGAGCGGAGCCCTCGGAGCGTGTCGCATGGCTGCTGGG
ACAATTCAATATATTGCCACTGGTACCACGACGAGTGAGTGCCCATCGGT
CGCCCTAGATATCACGCTGCTGCATGACATGACACAGATGATCATTACAT
GTTGATGGCATAGATCGGGCACCTGCATGAATGCAAGGTGCGCATATAAG
CTGCGCCAATGTCACAGCTATTGCGATATCTGCGAACCCAATCGGCCTGT
AGAGGTGAACGTGCTGTATCAGGCAGGTGGGCTGTGAGGCCTCTGCTGAT
CCCATCATGAAAGCATCATCATTCATGCTGATCCACAAGACAGGAATATG
TAGCAGCTGCTGATGTACATTTTTGTTTTTATGAATCCTTCACTTGATCT
GCAGATATTCACGCAAAACCACTTGCCAAAGAAGGAGCGCGCGGAGCTGC
TTGCC
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Coding sequence (CDS) from alignment at Contig_129:192834..193588-

>mRNA_9838 ID=mRNA_9838|Name=jgi.p|Trimin1|145214|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_129:192834..193588- (Tribonema minus UTEX_B_3156 )
ATGGTGGTTCGCCTTCGTTTGCAACGATTTGGCCACAAGAATCAGCCATT
CTATCGAGTCGTCGCCGCAGACGCCCGTGCCCCACGAGATGGCAAATTCA
TCGAGATCGTCGGCACTTACAATCCGATCCCCACCAGGGATGGCTACAAG
GAAGTCAGGTTCAACAGGCAACGGATAGAGTACTGGCTAGGCGTCGGAGC
GGAGCCCTCGGAGCGTGTCGCATGGCTGCTGGGACAATTCAATATATTGC
CACTGGTACCACGACGAATATTCACGCAAAACCACTTGCCAAAGAAGGAG
CGCGCGGAGCTGCTTGCC
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