mRNA_9834 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A835ZFQ3_9STRA (SGF29 tudor-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ3_9STRA) HSP 1 Score: 551 bits (1421), Expect = 1.140e-197 Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1
Query: 1 MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT 873
MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT
Sbjct: 1 MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT 291
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: D7FYG8_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYG8_ECTSI) HSP 1 Score: 188 bits (478), Expect = 6.940e-55 Identity = 119/288 (41.32%), Postives = 169/288 (58.68%), Query Frame = 1
Query: 10 IEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVL-GSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQI-HSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
++DF+D ++T+PNE++R+ L+R+LDK S+EL F+ +A+ K++ R D ++++P LV+DP +A+I + ++ +QI DEKVAIADQ H VA L+RLT DLA ++ L + G FD A G++VA + + D WVLGRV + +G Y VMDEDDNSK +DE V+ L G +LSKG+ V+AVY DTTSFY A I++PPR QI + TA VQF DDAD+ G+TPHR + HI+ LP
Sbjct: 14 VDDFMDGMTTMPNEIRRNSQLMRTLDKDAHGLSSELEALHNKFLG-----------QAREKMKARGD-SQELDPKVLVDDPPLMAEIDSLFSRTKQIVDEKVAIADQTHQMVADRLKRLTTDLASFEQTLHSQG---------------------EFDVGAAQPGDQVAFQEDPEAD-WVLGRVLSWMHETGQYEVMDEDDNSKKLTMDEHQVIPLEGRTERLSKGDDVLAVYVDTTSFYHATIAIPPRGRGQIGNGGTAHVQFVDDADEHGVTPHRAVPIIHIIKLP 267
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2G351_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G351_9STRA) HSP 1 Score: 132 bits (331), Expect = 6.120e-34 Identity = 78/206 (37.86%), Postives = 115/206 (55.83%), Query Frame = 1
Query: 268 IAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHS--TTASVQFEDDADDSGMTPHRVILTKHIMPLPNT*G 879
+A+KR + Q+A EKV I++Q ++ ++ +L +L +E L TSG F A G++VA KP+ W+L RV+EYD NSG Y ++DEDD +K Y V E VV+L G +L++GE V A+YPDTTSFY AV++ PRR + + +VQF DDAD++G P R I ++++ P G
Sbjct: 9 LASKRQRAHQMAGEKVQISEQAYNLAENYINKLDLELGKFEEHLRTSG---------------------EFSASGASPGDQVAAKPDEE---WILARVQEYDINSGFYTLLDEDDQNKTYSVSESFVVML-EGARLTRGEEVYAIYPDTTSFYPAVVTSAPRRSASAANGPVFCTVQFHDDADETGNNPDRQIALQYVIRPPEEPG 189
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2W6R2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6R2_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.440e-32 Identity = 80/205 (39.02%), Postives = 116/205 (56.59%), Query Frame = 1
Query: 265 DIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVI-SVPPRRGSQI--HSTTASVQFEDDADDSGMTPHRVILTKHIMPLPN 870
DIAAKR + +Q+ DEKV +++QM D HL RL +D+ ++ L +G + +A G++VAV+ E W+LGRV EYD +G+Y V DED+ K ++V + ++ L KLSKGE V+AVYPDTTSFY A++ SV + G + S+ +VQF DD DDSG+ P R + HI+ P+
Sbjct: 78 DIAAKRRRAEQMVDEKVQVSEQMVDLCDVHLTRLQQDIRRFEDYLRANG---------------------EYSAGVASAGDQVAVQVEEE---WILGRVWEYDIAAGVYTVGDEDEAEKTFQVSDAHIIRLEQ-LKLSKGEEVLAVYPDTTSFYPAIVTSVSRKMGGALAGDSSFCTVQFHDDEDDSGINPDRSVKILHIIRPPD 257
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2UAL2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAL2_9STRA) HSP 1 Score: 121 bits (304), Expect = 7.920e-29 Identity = 98/309 (31.72%), Postives = 160/309 (51.78%), Query Frame = 1
Query: 10 IEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVS---------LLLDEKGTREAKRKLRERTD---------RDRDV----EPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
+E F++ IST+P+E++R+L L++ LDKS +EL +A+ +++ + LL ++ K + D R RD+ E VEDP L I+ R + Q+ +EKVAIADQ + + + ++RL +D+A + +L+ TG A +GG + D+ A V V P + W+L +V ++ +G Y + DED +++K + + E VVVL +LS+G+ + AVYPDTTSFY A + R+ T V F+DD D+ G+T + +L KH+M P
Sbjct: 9 LESFIENISTLPHELRRNLELMKDLDKSCSAVVSELQQAQVEYVTAARAKIDALPVLLQNDNXXXXXXXKSQGTGDEQPNNNTKGRKRDLPTTEELVAYVEDPPPLWHISKLRRQASQLVEEKVAIADQAYSLIQSTVQRLDKDIAEFETLLKG----TGEFEVAVVGGG-------KPDDLAA-----VQVTPSSPD--WILAKVISHNRETGTYKLSDEDVESNKIFTLPESQVVVLNILERLSRGDMIYAVYPDTTSFYPATVVQSARK------TFVMVNFKDDGDEHGVTHDKAVLLKHVMRPP 293
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A1Z5KGC0_FISSO (SAGA-associated factor 29 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGC0_FISSO) HSP 1 Score: 120 bits (301), Expect = 1.600e-28 Identity = 91/307 (29.64%), Postives = 152/307 (49.51%), Query Frame = 1
Query: 7 HIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAE--------AERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLV-----------EDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
++E F+++++T+P +V+R+L L++ LD+S + A+L E AE + + + E G R R D E A ++ D A+ I A +A C Q ADEKV +A Q ++++ A + RL DL + ++L+ G F + + ++A E W+L +V E+D + Y ++DED ++ K + + E VV+L +LSKG++V AVYPDTTSFY+A + PR+ + S V F DD+D+ G+T + + +HIM P
Sbjct: 8 YLESFVESLTTLPYQVRRNLELVQDLDRSYQSDLAKLQELYTAYLQQAEEKVLQLEVAPMETGKGV-------RVIRKEDAEKAPIIIPTTAELMAYTYDADAMRQIEALQADCLQKADEKVCVARQAYEWIDAVVERLDDDLQALSKILQAQG---------------------EFQQEEVAQPNDLAACQLGTE--WILAKVLEFDTKTRTYKLVDEDVESHKVFHLPEDQVVILRGVDRLSKGDTVFAVYPDTTSFYQATVVQVPRKTAGQSSPFVIVSFMDDSDEFGVTHDKTVQLQHIMVPP 284
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: B7G1U2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1U2_PHATC) HSP 1 Score: 115 bits (289), Expect = 2.590e-26 Identity = 89/296 (30.07%), Postives = 146/296 (49.32%), Query Frame = 1
Query: 7 HIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFI--------SVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
++E F++ +ST+P+EV+R++ LI+ LDK++ L + ++ +I + L+ E GT + E + V++ I + C Q ADEK+AIA Q D + A +RL DL M+ +L+ +G + E K ++A E W+L +V +D +G+Y + DED +++K + + E V++L + KL G+SV AVYPDTTSFY A + PR+ S T V F DD+D+ G+T + + K+ MP P
Sbjct: 66 YLEAFIETLSTLPHEVRRNMDLIKDLDKASGVRGETLRQLQQRYIHQAEDKMMQLELVEREDGTHGVRVIDGTEVIIPTTYELVEYVQNAELERQIQQAQEDCLQKADEKIAIAQQALDRIDAVCQRLDHDLGAMELLLQNTG-------------------DFQTQETKTAKPNDLAACQITPESEWILAKVVTFDPQTGVYKLADEDVESNKLFTLPESQVIILYAIEKLRAGDSVYAVYPDTTSFYPATVVQAPRKASTPFVT---VNFVDDSDEFGVTHDKFVPLKYTMPPP 339
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A6V2GR38_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GR38_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.480e-25 Identity = 69/197 (35.03%), Postives = 113/197 (57.36%), Query Frame = 1
Query: 280 RAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
+ KC ++A EK+ +A+Q + V A +RRL DLA + +L+ TG A+ GG +A + A++ + W+L +V +D +G+Y + DED +++K + + E VVVLG +LS+G+ + AVYPDTTSFY+A ++ PR+ S S V F+DD D++G+T + +L KH+M +P
Sbjct: 154 KQKCFKLAQEKILVANQAYSVVDAAVRRLDFDLAKFETLLKN----TGEFEASLFGG-------------VAKPNDLAAIQVNPNSTDWILAKVISHDLGTGMYKLSDEDVESNKIFNLPESQVVVLGGVDRLSRGDIIYAVYPDTTSFYQATVAQAPRKVSGGGSFVM-VNFKDDGDENGVTHDKAVLMKHVMRVP 332
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S4A4V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4V8_9STRA) HSP 1 Score: 111 bits (278), Expect = 4.700e-25 Identity = 95/315 (30.16%), Postives = 151/315 (47.94%), Query Frame = 1
Query: 10 IEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSL-LLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVA----LADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMK-GEEVAVKPERHE-DLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVL---GSGT---------------------KLSKGESVMAVYPDTTSFYKAVISVPPRR-GSQIHSTTASVQFEDDADDSGMTPHRVILTKHIM 858
IED L+ I+ + VKR+L LIR L + ++EL E+ V +++E R A K PAK +E+ + + A KR +C + +E + +A Q VA H+ + +LA + + L +G F+ A + G+EVAV+ + ++ + WVLGRV Y ++ LY V D DD+ K +++ V+ L G G +L KG+ V +YPDTTSFY+ V+++P RR GSQ T QF+DDAD++G+TP R + K+++
Sbjct: 21 IEDLLEVITPVSGLVKRNLDLIRQLGAT---ATSELEAVEKEEAKVEKDVIEELDKRAAAAK------------PAKKLEEVIGDKKDFEERAEKRRRCDGLFEEAIEVARQTEVAVARHIDHIDGELANLSQHLHATG---------------------EFENAGAARPGDEVAVRLDDYDKEAWVLGRVVRYRSDEDLYEVADADDDRKVFELGATRVIPLTDTGRGVPPAHVLCGAQSCLVDAHDEANRLQKGDEVFGIYPDTTSFYQCVVTIPARRSGSQ--GGTCHCQFQDDADETGITPDRPVPLKYVL 297
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2KGV9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGV9_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.270e-24 Identity = 97/324 (29.94%), Postives = 157/324 (48.46%), Query Frame = 1
Query: 10 IEDFLDAISTIPNEVKRSLYLIRSLDK-----SNKDGSAELA---EAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPI-----AMKGEEVAVKPE-----RHEDL---------------WVLGRVKEYDANSGLYLVMDEDDNS---KDYKVDEVDVVVLGSGT-KLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTAS-----VQFEDDADDSGMTPHRVILTKHI 855
+E FLD IS +P E++R+L L+R LD+ S+K +AE A A+R + L + E E + + T+ E + +P L I R QQ+ +EK A+A+Q ++ + L +L DLA + +L G+G P+ +K AV P + +L W+LG+V Y+ +GL++V DED +S K + + E + +G G K+SKG++V AVYP+TTSFY+A +S PPR+ S + S VQF+DD+D+ G+T ++++ H+
Sbjct: 16 LEAFLDDISNLPFEIRRNLELLRELDRLYQVSSDKLQAAENAYIERAQRTILDFPLPIHE----EDEAVVVPTTE-----ELRAFIHNPEELEKIETYRRDTQQLIEEKKAVANQTYNIIQCALDKLDTDLAEYENLLR--------------------GTGEFLKAPVIKNERTVKQNLAAVPPNIRLLAKPNELCAMRVNPAQLGTDAEWILGKVISYNPETGLFVVSDEDPDSIEKKKFTLPESQIKTVGYGLEKVSKGDTVFAVYPETTSFYQATVSQPPRKISGSVAAVPSNLFIYVQFKDDSDEFGITHEKMVMLNHV 310 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9834 ID=mRNA_9834|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=924bp|location=Sequence derived from alignment at Contig_129:158206..161297+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCTCACATAGAGGACTTCCTCGATGCCATATCCACAATACCCAATGAback to top protein sequence of jgi.p|Trimin1|352706 >Trimin1|352706|estExt_Genemark1.C_Ctg_1290017 ID=Trimin1|352706|estExt_Genemark1.C_Ctg_1290017|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSback to top mRNA from alignment at Contig_129:158206..161297+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9834 ID=mRNA_9834|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3092bp|location=Sequence derived from alignment at Contig_129:158206..161297+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_129:158206..161297+ >mRNA_9834 ID=mRNA_9834|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_129:158206..161297+ (Tribonema minus UTEX_B_3156 )back to top |