mRNA_9769 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351137
Unique Name	mRNA_9769
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A835YJ34_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ34_9STRA)

HSP 1 Score: 1097 bits (2836), Expect = 0.000e+0
Identity = 684/684 (100.00%), Postives = 684/684 (100.00%), Query Frame = 1

Query:    1 MGKPRGNGRGPPGKGRYQWSSKKDKKDAHSREAHDPVDTPRDHRKQEWAKPHPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATSLKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNYSDTGGVDTSNFRQRKPTPAESAVRGGXXXXXXXXXXARRKLQHRLPKERAARQVSVGARR 2052
            MGKPRGNGRGPPGKGRYQWSSKKDKKDAHSREAHDPVDTPRDHRKQEWAKPHPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATSLKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNYSDTGGVDTSNFRQRKPTPAESAVRGGXXXXXXXXXXARRKLQHRLPKERAARQVSVGARR
Sbjct:    1 MGKPRGNGRGPPGKGRYQWSSKKDKKDAHSREAHDPVDTPRDHRKQEWAKPHPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATSLKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNYSDTGGVDTSNFRQRKPTPAESAVRGGXXXXXXXXXXARRKLQHRLPKERAARQVSVGARR 684

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.520e-67
Identity = 182/553 (32.91%), Postives = 256/553 (46.29%), Query Frame = 1

Query:  262 VGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWE--------ASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRW------LSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATS--LKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNY 1872
            V L+I Y G   +G+Q+N GA T+EAELE ALYL G IS  NFG  +K+ W+RA RTD GVHA + V+++K+                        +GE+                    E +   +N +LPD IR + + R    F+++  C+GRRY Y++PT  LA   Y+  L   A  WE        +S     G+  D++A          A   A   P E                     A +A   A+  S+   G              A +  T A                                       E EG+G        EG+E R       LSSPAV+ RVAE+L+ +R+ P++L  LRE L  F GTKNYHNYT  + ATD SC R++ SFTA +PF   G+EW+ L+V GQSF++HQIRKMVA+ VD VR Q++ ED  +S     + LG+APS GL+L++  +  Y +    A A    L+   G AA A     +++I + I+  E A   F AWLD ++++P NY
Sbjct:  193 VALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRTDKGVHAAAQVISVKLTY--------------------LNDGER--------------------ETVEK-INKYLPDDIRAVDIRRAPKSFDSRTRCSGRRYEYIMPTYVLAPKAYVTDLFETALEWEMAHAGGGDSSAVDDLGETADISAVAGGSIQVDAAQLAAGSPPPE------------------AAQAENASSGAVLPSAGAVGTEASGLTDAADAAAAASMETPAAGRRQGHAVGAADDDGASEYSGRSDT--EGDDDDGNSQQEYEGSGD-------EGKEARLRQAAVELSSPAVVQRVAEQLKGYRLKPDRLEDLRETLKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQSFIMHQIRKMVASTVDRVRGQSNPEDFTKSFLPEKINLGIAPSDGLYLERPLYEPYNKDVKRAKAHDRLLEWETGPAAEALEDFKKNKIHAGILAKEQADYDFVAWLDRITRYPCNY 677

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A067C2J0_SAPPC (PseudoU_synth_1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2J0_SAPPC)

HSP 1 Score: 182 bits (462), Expect = 6.110e-47
Identity = 165/576 (28.65%), Postives = 225/576 (39.06%), Query Frame = 1

Query:  154 HPGSFAGELRSLLDPEPLAQLQAADGTPQ-GKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATSLKCREGSAAAARVTAMR-DRIVSHIVDGEAAHLQFCAWLDYMSKFPKNYS 1875
            HPGS+A            AQL   D + + G   KR+ GL+I YCG    GMQ+N G  TVEAELE+ALY  G I+  N+G++QKIGW RAARTD GVHA   +V  K+ V                 EGT                   EDE       R  VN+ LP  IRVL+V  VT  FNAKN+C  R Y YL PT                                                  V +P+  P+                 +A S DQ   P  +H N                                                                                    ++ AV     +K + +R+      +++  LAL+ GT N+HN+T +     P C+R + SF A +PFV  G EW+ + V GQSF+LH IRKM+ T +DV+R    +  + ++  Q  M L  APS GL+L K  F +Y ++       SL+  E  A  AR+ A + D+I   I++ E  H  F  WL  +  FP +Y+
Sbjct:   53 HPGSYA------------AQLDPTDTSDKCGTGPKRRYGLLIAYCGREYSGMQMNIGVKTVEAELEQALYNAGAIARCNYGFIQKIGWNRAARTDKGVHAAGQLVCAKLCV-----------------EGT-------------------EDE------FRDKVNSFLPKDIRVLEVVAVTKNFNAKNSCDRRTYEYLAPTF-------------------------------------------------VFQPSAAPSS----------------SAVSNDQ---PWDAHAN---------------------------------------------------------------------------------ELFTNLAVDPAAWQKQKEYRLDDATYDKIQATLALYEGTHNFHNFTSKLPPYSPKCNRYIMSFKADKPFVLNGSEWIRMRVIGQSFLLHHIRKMIGTMIDVIRGATPIATISKAFEQTKMDLPKAPSAGLYLAKAHFDVYNDK-NENHRPSLEFDE-PAQLARIEAFKHDQIFPEIMEKEEQHAIFPLWLLQLDAFPFSYA 423

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A3R7IET8_9STRA (PseudoU_synth_1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IET8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.050e-45
Identity = 162/611 (26.51%), Postives = 230/611 (37.64%), Query Frame = 1

Query:   55 WSSKKDKKDAHSREAHDPVD--TPRDHRKQEWAKPHPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATS---LKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNY 1872
            W+ K+  K A      D  D  T +DHR       HPGS+A + +   D  P      +   P     KR+ GL + +CG    GMQ+N G  T+EAELE+AL+  GGI+ +N+G+LQKIGW+RAARTD GVHA   ++  K+ V           G D                                E     VNA LP  IRV+++  VT  FNAK +C  R Y YL PT   A            +A   ++P+   +                                                  + D +  P + H +                                                                            EG     +   A +    E  + FR++ E L +L   L  + GT N+HN+T +   T+P   R + SF A  PFV+  +EWV L V GQSF+LH IRKM+ T V+VV     +  ++R++    M L  APS GL+L +  F +Y  +   A  TS   L  +E + AAA     RD I  HI+  E     +  W+  +   P +Y
Sbjct:   10 WAVKRKNKHARREGQQDGGDKETKQDHRSNRSETVHPGSYAAQRQPSTDATPSTSASESVVQP----TKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLLV-----------GDD-------------------------------EEGFVAKVNAALPADIRVMQMVTVTKSFNAKMSCDQRTYEYLAPTFIFAK-----------RAHSVAKPKCEEE--------------------------------------------------TKDATLWPSNLHDS---------------------------------------------------------------------------EEGINNNLVIDEATL----ETHKAFRLSEETLVQLNAALKQYEGTHNFHNFTSKMEPTNPQAMRYIISFEAERPFVQNNMEWVRLRVVGQSFLLHHIRKMIGTVVEVVSGVTELNTIERAMQLQKMDLPKAPSVGLYLAQAHFEVYNMKMEEAIQTSHPSLNLKEPAVAAAVEQFKRDFIFDHIMQHEEQTRTYAKWVRTLETLPFDY 434

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A329SF03_9STRA (PseudoU_synth_1 domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SF03_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.320e-42
Identity = 156/576 (27.08%), Postives = 217/576 (37.67%), Query Frame = 1

Query:  154 HPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATS---LKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNY 1872
            HPGS+A + +    P       AAD        KR+ GL + +CG    GMQ+N G  T+EAELE+AL+  GGI+ +N+GYLQKIGW+RAARTD GVHA   ++  K+ V                                        D+ A   A    VNA LP+ IRV+ +  VT  FNAK +C  R Y YL PT       +I G                                                                       + A P +S  N                                                              E++  G           E+ +  +  +     E  + FR++ E L +L   L  + GT N+HN+T +   T+P  +R + SF A  PFV+  +EWV L V GQSF+LH IRKM+ TAV++V        ++R++    M L  APS GL+L +  F +Y  +   +  TS   L  +E S AAA     RD I  HI+  E     +  WL  M   P +Y
Sbjct:   46 HPGSYAAQRQRSETP-------AADAPSL--PTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGYLQKIGWSRAARTDKGVHAAGQLLTAKLHVG---------------------------------------DDIA---AFIAKVNAALPEDIRVMHMVTVTKNFNAKMSCDQRTYEYLAPT-------FIFG-----------------------------------------------------------------------KRARPSTSSKN-------------------------------------------------------------EEKQAEGASQWPSDLRDSEEGFDDNVVIDNTTLEAHKAFRLSDETLEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQNDMEWVRLCVVGQSFLLHHIRKMIGTAVEIVSGVTDPSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMEDSIQTSHPPLDLKEPSVAAAVELFKRDFIFDHIMKHEERTRTYAKWLRTMEVLPFDY 431

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: G4YFE8_PHYSP (PseudoU_synth_1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YFE8_PHYSP)

HSP 1 Score: 169 bits (428), Expect = 6.460e-42
Identity = 171/637 (26.84%), Postives = 239/637 (37.52%), Query Frame = 1

Query:   55 WSSKKDKKDAHSREAHDPVDTPRDHRKQEWAKPHPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAW-EASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASAD-QSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATS---LKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNYSDTGGVDTSNFRQRKPTPAESAVRGG 1950
            W++++  K A      D  +   D R +     HPGS+A + R    P       AAD        KR+ GL + +CG    GMQ+N G  T+EAELE+AL+  GGI+ +N+G+LQKIGW+RAARTD GVHA   ++  K+ V                                         E A   A    VNA LP+ IRV+ +  VT  FNAK  C  R Y YL PT       +I    A A A  E+ +    GD                                                AA+A   S L  S  G                                                                                   +  +  +     E  + FR++ E L +L   L  + GT N+HN+T +   T+P   R + SF A  PFV+  +EWV L V GQSF+LH IRKM+ TAV++V        ++R++    M L  APS GL+L +  F +Y  +   +  TS   L  +E + AAA     RD I  HI+  E     +  WL  M   P +Y     ++   +++ K   AE   R G
Sbjct:   10 WAARRKTKQARRDGQPDDAEPRPDRRAERSDAVHPGSYAAQ-RQRQHPT-----DAADKPALSLPTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHVG----------------------------------------EDADIPAFVGKVNAALPEDIRVMHMVTVTKNFNAKMTCDQRTYEYLAPT-------FIFAKRARAAAIKESEKTEEKGD------------------------------------------------AATAQWPSDLRDSEEG-----------------------------------------------------------------------------------FDDNVVIDNTTLEAHKAFRLSDETLEKLNATLKEYVGTHNFHNFTSKMEPTNPQAKRFIISFEAERPFVQNDMEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDPSTIERAMQLTKMDLPKAPSVGLYLAQAHFEVYNLKMAESIQTSHPPLDLKEPAVAAAVELFKRDFIFDHIMKHEERTRTYAKWLRTMEVLPFDYVAKPYLE---WKKEKEEEAERTDRAG 459

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A225WAC7_9STRA (tRNA pseudouridine(38-40) synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WAC7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.110e-41
Identity = 159/577 (27.56%), Postives = 214/577 (37.09%), Query Frame = 1

Query:  154 HPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAV-DAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATS---LKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNY 1872
            HPGS+A +   L  P     L            KR+ GL + +CG    GMQ+N G  T+EAELE+AL+  GGI+ +N+G+LQKIGW+RAARTD GVHA   ++  K+ V D  P                                           A    VNA LPD IRV+ +  VT  FNAK  C  R Y YL PT       +I G  A A                             AA    V+  E                     AA+   S L  S  G                                                                                   +     + +   E  + FR+  + L +L   L  + GT N+HN+T +   T+P  +R + SF A  PFV+ G+EWV L V GQSF+LH IRKM+ TAV++V        + R++    M L  APS GL+L +  F +Y  +   +  TS   L  +E   AAA     RD I  HI+  E +   +  WL  M   P +Y
Sbjct:   44 HPGSYAAQRPRLESPVMSTSLPT----------KRRYGLWVAFCGKNYSGMQMNEGVNTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHVGDNIP-------------------------------------------AFVVKVNAALPDDIRVMHMVTVTKNFNAKMTCDQRTYEYLAPT-------FIFGKRARA-----------------------------AASKNTVKNEEK-----------------ETEAATQWPSDLRDSKEG-----------------------------------------------------------------------------------FNHDVVIDSMTLEAHKAFRLCDKTLEQLNTTLKKYVGTHNFHNFTSKMEPTNPQANRFILSFEAERPFVQNGMEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTGAATVDRAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMVDSIQTSHPPLDLKEADVAAAIEQFKRDFIFDHIMKHEESTRTYAKWLRTMEVLPFDY 431

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A2P4XQU8_9STRA (tRNA pseudouridine(38-40) synthase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQU8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.080e-41
Identity = 160/577 (27.73%), Postives = 219/577 (37.95%), Query Frame = 1

Query:  154 HPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVI-ARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEERYGAADATS---LKCREGSAAAARVTAMRDRIVSHIVDGEAAHLQFCAWLDYMSKFPKNY 1872
            HPGS+A + +    P        AD T      KR+ GL + +CG    GMQ+N G  T+EAELE+AL+  GGI+ +N+G+LQKIGW+RAARTD GVHA   ++  K+ V           G D                                 A    VNA LP+ IRV+ +  VT  FNAK  C  R Y YL PT       +I G     K   A+ P+ A  + +  A                                          AA+   S L  S  G                                                                                    L+   VI +   E  + FR+  E L +L   L  + GT N+HN+T +   T+P  +R + SF A +PFV+  +EWV L V GQSF+LH IRKM+ TAV++V        ++R++    M L  APS GL+L +  F +Y  +   +  TS   L  +E   AAA      D I  HI+  E     +  WL  M   P +Y
Sbjct:   44 HPGSYAAQHQRSQTP--------ADSTSL--PTKRRYGLWVAFCGKNYSGMQMNEGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRAARTDKGVHAAGQLLTAKLHV-----------GDDIP-------------------------------AFVAKVNAALPEDIRVMHMVTVTKNFNAKMTCDQRTYEYLAPT-------FIFG-----KRTRAAVPKDAEKSEEKEAD-----------------------------------------AATQWPSDLRDSEEG------------------------------------------------------------------------------------LNDNVVIDSTTLEAHKAFRLDDETLEKLNTTLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAEQPFVQNDMEWVRLRVVGQSFLLHHIRKMIGTAVEIVSGVTDTSTIERAMELTKMDLPKAPSVGLYLAQAHFEVYNMKMADSIQTSHPPLDLKEPGVAAAVEQFKHDYIFDHIMKHEEHTRTYAKWLRTMEILPFDY 431

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BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A2R6XX75_MARPO (PseudoU_synth_1 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XX75_MARPO)

HSP 1 Score: 167 bits (424), Expect = 3.300e-41
Identity = 162/570 (28.42%), Postives = 226/570 (39.65%), Query Frame = 1

Query:  157 PGSFAGELRSLLDPEPLAQLQAADGTPQGKK-AKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXER--EGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQ-AHMILGLAPSKGLFLDKLFFSMYEERYGAADATSLKCREGSAAAARVTAMR----DRIVSHIVDGEAAHLQFCAWL 1842
            P S A E+      +P A+  +++G  + K+  KRK+ L+I YCG G +GMQ N GA T+E ELEKAL+  G I ++N G  +K+GW RAARTD GV A+  VV+    +D P                                             +   VN+HLP  IRVL   RVT  F+AK  C  RRY Y+LP      P+ +   LAE                                     + A NP                   A+  D  A+   +  +G                T  T A                         AP            +R    A           E +++L   +           F+   + + RL  VL  F G+ +YHN+T R  ATDPS  R + SF A   FV  GVE+V  SV GQSFMLHQIR+MV  AV VVR  A    ++ +L + + + + +AP  GLFL++ ++S Y  ++G       K  E  +     T +R    + I  HI   EA  L F +W+
Sbjct:   51 PLSVADEIE-----DPSAKRSSSNGDREPKRYKKRKIALMIAYCGAGFQGMQRNPGATTIEGELEKALFQAGAIQDSNVGQPKKVGWMRAARTDKGVSALGQVVSGNFFIDPP--------------------------------------------GLVERVNSHLPAPIRVLGYKRVTPSFDAKQNCVRRRYEYVLPVYVFD-PDLVTACLAE-------------------------------------QEANNPG------------------ASELDDGAIAALTSSDGAVQSDST---------TVDTTAVDVSDTASEQQTRSVSAIALSDVETAPAPRIQNPEEDGNQRATRAAAKEAEKDMEMAEIRKYLMEKSGAKNA------FQFGEDCINRLNRVLGRFVGSHSYHNFTPRTKATDPSSLRYIISFEAESKFVVDGVEFVRCSVVGQSFMLHQIRRMVGLAVAVVRGCAPESILETALRRDSEVKVPMAPELGLFLEECYYSSYNSKFG-------KLHEEVSLVDYTTDVRKFKHEVIYPHIASTEARDLVFASWV 493

[Close]

BLAST of jgi.p|Trimin1|351137 vs. uniprot
Match: A0A7S1TVP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVP3_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.020e-39
Identity = 182/593 (30.69%), Postives = 259/593 (43.68%), Query Frame = 1

Query:  160 GSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMRGMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHAVSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGXXXXGVQAGGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYT-IRRAATDPSCSRVMRSFTAGEPFVRG----GVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEER----------YGAADATSLKCREGSAAAARVTAMRD-----RIVSHIVDGEAAHLQFCAWLDYMSKFPKNYSD 1878
            G  AG  R+  +   +A     +  P     K+++ L+ GY G    G+Q+N G  TVEAELE A++  G + N NFG LQK+ WTRA RTD GVHA +NV + ++ V    D                                         +A+   +N  LP+ IR+    R T  F+AK +C+ RRY YLLPT  L      D      KA  A    + GD                  P + V                         AA+A+ SA+                      A        XXXXXXXXXXXXXXXXXXXXXXXXA              +  A        P+ +    ++ P V A VA +L  +R+T E++ +L++V+  F GT  YHNYT I+   T  SC R ++     +P+V      G+EWV +++ GQSF+L+QIRKMVA   +V R Q ++E M+RS  +  M L +AP  GLFL+K FF  Y  R          +GA D      +E  ++  ++ +  D      I   + + E     F +W+ +MS   + Y +
Sbjct:   92 GEHAGSYRATAEGAAVAASLDVEKAP-----KKRLALIFGYNGKRFSGLQINPGQRTVEAELELAMFKAGAVRNENFGNLQKLSWTRACRTDKGVHAATNVASARLIVKDDDD-----------------------------------------DALVERMNEALPEDIRMFGAVRATKTFHAKLSCSHRRYVYLLPTFCLM--PNADMTATWDKALAAHGLPALGDE-------------KFRMPESTVRRFTPDEKVTLTKTELREERKSAAEAAAAEASAV----------------------APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASADEPAAADAEPGPKASA-VKATLLDPQRKITE-VAPPEVKAEVAAELAKYRVTEEQMDKLKDVVKAFEGTHRYHNYTQIKAVKTFASCLRYIKHMDVSDPYVPSEDPSGMEWVRITLIGQSFLLNQIRKMVAMMAEVTRGQCTMEKMERSFAEVKMDLDIAPPTGLFLEKPFFDEYNRRLADDRMPLGWHGALDGDFEGPKEFQSSMMKIGSAVDDFRTSNIEKFLYEEEKDDRYFVSWVGFMSWKNRPYEE 599

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351137 vs. uniprot

BLAST of jgi.p|Trimin1|351137 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YJ34_9STRA	0.000e+0	100.00	Pseudouridine synthase n=1 Tax=Tribonema minus Tax...	[more]
D8LBC7_ECTSI	1.520e-67	32.91	tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus Tax...	[more]
A0A067C2J0_SAPPC	6.110e-47	28.65	PseudoU_synth_1 domain-containing protein n=2 Tax=...	[more]
A0A3R7IET8_9STRA	4.050e-45	26.51	PseudoU_synth_1 domain-containing protein n=3 Tax=...	[more]
A0A329SF03_9STRA	4.320e-42	27.08	PseudoU_synth_1 domain-containing protein n=13 Tax...	[more]
G4YFE8_PHYSP	6.460e-42	26.84	PseudoU_synth_1 domain-containing protein n=5 Tax=...	[more]
A0A225WAC7_9STRA	1.110e-41	27.56	tRNA pseudouridine(38-40) synthase n=1 Tax=Phytoph...	[more]
A0A2P4XQU8_9STRA	2.080e-41	27.73	tRNA pseudouridine(38-40) synthase n=1 Tax=Phytoph...	[more]
A0A2R6XX75_MARPO	3.300e-41	28.42	PseudoU_synth_1 domain-containing protein n=2 Tax=...	[more]
A0A7S1TVP3_9STRA	2.020e-39	30.69	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_81	contig	Contig_81:293316..299536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351137\|estExt_Genemark1.C_Ctg_810049
BRITE	ko00000,ko00001,ko01000,ko01002,ko03016
KEGG Pathway	ko04624,map04624
KEGG ko	ko:K06173,ko:K20674
EC	5.4.99.12
GOs	GO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
Preferred name	PUS1
Description	pseudouridine synthase activity
COG category	J
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0101@1\|root,KOG2553@2759\|Eukaryota
Evalue	3.76e-47
Seed ortholog	112098.XP_008605839.1
Hectar predicted targeting category	other localisation
Ec32 ortholog description	tRNA Pseudouridine Synthase
Ec32 ortholog	Ec-27_004410.1
TranscriptId	351459
Track	FilteredModels1
ProteinId	351137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351137	gene_9769	Tribonema minus UTEX_B_3156	gene	Contig_81 293316..299536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351137	Trimin1\|351137\|estExt_Genemark1.C_Ctg_810049	Tribonema minus UTEX_B_3156	polypeptide	Contig_81 293316..299536 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9769_1	exon_9769_1	Tribonema minus UTEX_B_3156	exon	Contig_81 293316..293734 +
exon_9769_2	exon_9769_2	Tribonema minus UTEX_B_3156	exon	Contig_81 294974..295252 +
exon_9769_3	exon_9769_3	Tribonema minus UTEX_B_3156	exon	Contig_81 295719..296438 +
exon_9769_4	exon_9769_4	Tribonema minus UTEX_B_3156	exon	Contig_81 297261..297444 +
exon_9769_5	exon_9769_5	Tribonema minus UTEX_B_3156	exon	Contig_81 298399..298774 +
exon_9769_6	exon_9769_6	Tribonema minus UTEX_B_3156	exon	Contig_81 299460..299536 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9769	CDS_9769	Tribonema minus UTEX_B_3156	CDS	Contig_81 293316..293734 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_81:293316..299536+
coding sequence from alignment at Contig_81:293316..299536+

spliced messenger RNA

>mRNA_9769 ID=mRNA_9769|Name=jgi.p|Trimin1|351137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2055bp|location=Sequence derived from alignment at Contig_81:293316..299536+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGCCACGAGGCAACGGTCGCGGCCCTCCCGGCAAGGGTCGATA
TCAGTGGTCGAGCAAGAAAGACAAGAAAGATGCCCACAGCCGCGAGGCCC
ACGATCCAGTGGATACTCCCAGGGACCACAGGAAGCAGGAATGGGCGAAG
CCTCACCCGGGGTCCTTTGCAGGGGAGTTGAGATCTTTGCTCGACCCTGA
GCCGCTGGCGCAGCTGCAGGCCGCGGATGGTACTCCTCAGGGCAAGAAAG
CGAAGAGGAAAGTGGGCCTCGTCATCGGCTACTGCGGCACGGGCATGCGG
GGCATGCAGCTCAACAATGGCGCGCTCACGGTGGAGGCAGAGCTGGAGAA
AGCCCTGTACCTTTGGGGTGGCATCAGCAATGCCAACTTCGGCTACTTGC
AAAAGATTGGCTGGACCAGAGCCGCGCGCACGGACGGCGGCGTGCACGCG
GTGTCCAACGTCGTCGCCCTCAAGATTGCCGTAGATGCGCCGCCGGATGC
ATCCGCAGCAGCAGCAGGCAGCGATGCTCAGCAAGAGGGCACGGCTCAGG
AGGGGGAAAAGGGGGAGTCGCGGAAGGGGGTGCAGGCGGGGGGGGAGGCG
GAGGACGAGGCGGCGCAGCATGAGGCGATTCGCACGGGCGTGAATGCGCA
CCTCCCGGATGCGATTCGCGTGCTCAAGGTGGCGCGCGTGACCGGCGGCT
TCAACGCGAAGAACGCGTGCACGGGGCGACGCTATGCCTACCTACTGCCG
ACGTGCACACTGGCCGCTCCAGAGTACATTGACGGTCTGCTTGCAGAGGC
CAAGGCCTGGGAAGCCTCACAACCGCGCAGCGCTGGTGACAATGTCGATG
TTGCAGCAGCAGCAGCTGCAGCAACTTCAACTAGTGCAGCCGCCCCGATG
GCAGTTGTCGAACCGGCAGAGAACCCAGCAGCAGCAGCAGCAACTTCAAC
TTCAACTGATGCAGCCGCCCCGATGGAAGTCACAGCAGCCTCAGCAGACC
AATCAGCACTGCCAGGGAGCAGCCATGGAAATGGTGCAGACAAATCAGGG
CTGCCAGAGCACGGCCACGGCAATGGGGCCGGTACAAATGCGACAGCAGC
AACAGCGGCAGCAGCTGAGAGCAGCGCGCCCGCCGCAGACTCTGCTGCTG
AGCAACCGCAACAAGGCAGCGGCGGCGCCCCCGATGGCGACAGCAGCGGA
GACGAAGGGGACGAGGGGGAGAGGGAGGGGGCGGGGGAAGGGGAAGGGGA
AGGGGGTCCGGAGGGGGAGGAAAAGCGTTGGCTGAGCAGCCCAGCAGTGA
TTGCGCGCGTGGCGGAGAAGCTGAGAACGTTCAGGATCACGCCCGAGAAG
CTGGCGCGGCTGCGCGAGGTCCTGGCGCTGTTCCGCGGAACCAAGAACTA
TCACAACTACACCATCAGGCGCGCCGCCACGGACCCGAGCTGCTCCCGCG
TCATGCGGAGCTTCACCGCGGGGGAGCCCTTTGTGAGGGGGGGGGTGGAG
TGGGTGCTGCTGTCGGTCGAGGGGCAGAGCTTCATGCTGCACCAGATTCG
GAAGATGGTGGCGACGGCGGTGGACGTGGTGCGCGCGCAGGCGTCGGTTG
AGGACATGCAACGCTCCCTCACGCAGGCGCACATGATCCTGGGTCTCGCC
CCCAGCAAAGGCCTCTTTCTCGACAAGCTCTTCTTCAGCATGTACGAAGA
GCGCTACGGCGCTGCCGACGCAACGAGCCTCAAGTGTCGCGAGGGCAGCG
CCGCCGCGGCGCGCGTCACCGCGATGCGCGACCGTATCGTATCGCATATC
GTAGACGGTGAAGCTGCGCACCTGCAGTTCTGCGCGTGGTTGGACTACAT
GTCCAAGTTCCCCAAGAACTACAGCGACACGGGGGGCGTTGACACGTCCA
ACTTCCGTCAGCGCAAACCGACGCCTGCAGAGTCGGCAGTCCGCGGCGGC
GGCGGCAGCGGCGGCGGCGGCGGGAGTGGCGCACGCCGCAAGCTGCAGCA
CCGTCTGCCAAAGGAGCGCGCCGCCCGCCAAGTGAGCGTAGGCGCACGCC
GCTAA

protein sequence of jgi.p|Trimin1|351137

>Trimin1|351137|estExt_Genemark1.C_Ctg_810049 ID=Trimin1|351137|estExt_Genemark1.C_Ctg_810049|Name=jgi.p|Trimin1|351137|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=685bp
MGKPRGNGRGPPGKGRYQWSSKKDKKDAHSREAHDPVDTPRDHRKQEWAK
PHPGSFAGELRSLLDPEPLAQLQAADGTPQGKKAKRKVGLVIGYCGTGMR
GMQLNNGALTVEAELEKALYLWGGISNANFGYLQKIGWTRAARTDGGVHA
VSNVVALKIAVDAPPDASAAAAGSDAQQEGTAQEGEKGESRKGVQAGGEA
EDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLP
TCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAAAAAATSTSAAAPM
AVVEPAENPAAAAATSTSTDAAAPMEVTAASADQSALPGSSHGNGADKSG
LPEHGHGNGAGTNATAATAAAAESSAPAADSAAEQPQQGSGGAPDGDSSG
DEGDEGEREGAGEGEGEGGPEGEEKRWLSSPAVIARVAEKLRTFRITPEK
LARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFVRGGVE
WVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLA
PSKGLFLDKLFFSMYEERYGAADATSLKCREGSAAAARVTAMRDRIVSHI
VDGEAAHLQFCAWLDYMSKFPKNYSDTGGVDTSNFRQRKPTPAESAVRGG
GGSGGGGGSGARRKLQHRLPKERAARQVSVGARR*

mRNA from alignment at Contig_81:293316..299536+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9769 ID=mRNA_9769|Name=jgi.p|Trimin1|351137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6221bp|location=Sequence derived from alignment at Contig_81:293316..299536+ (Tribonema minus UTEX_B_3156 )
ATGGGCAAGCCACGAGGCAACGGTCGCGGCCCTCCCGGCAAGGGTCGATA
TCAGTGGTCGAGCAAGAAAGACAAGAAAGATGCCCACAGCCGCGAGGCCC
ACGATCCAGTGGATACTCCCAGGGACCACAGGAAGCAGGAATGGGCGAAG
CCTCACCCGGGGTCCTTTGCAGGGGAGTTGAGATCTTTGCTCGACCCTGA
GCCGCTGGCGCAGCTGCAGGCCGCGGATGGTACTCCTCAGGGCAAGAAAG
CGAAGAGGAAAGTGGGCCTCGTCATCGGCTACTGCGGCACGGGCATGCGG
GGCATGCAGCTCAACAATGGCGCGCTCACGGTGGAGGCAGAGCTGGAGAA
AGCCCTGTACCTTTGGGGTGGCATCAGCAATGCCAACTTCGGCTACTTGC
AAAAGATTGGCTGGACCAGGTATGACGACTGTTGGAGTGGCTTCAGTATA
CTGTGAAGCAGCTTTGTTGATTAAGTTGGCGAGGACTTGTCATATATTGT
GGCTGGCAGATTCACTGCAAATACGCGTCATCATCGCTTTACTTTGTGTT
TCATCTTGCCATGCTCATCCAAGACAGTTTTGAAGTCCAACCTTCTAATG
CTGCGCAACAGCTCTTCAGCACGCTAATATGCACCATATGGGGAACATCT
CGTCAGTCTGCAGCATTGTGTCCTACTGAAGTTCTGGCACACCATTTGGT
ACATATGATGGTGCAACTGTGTCAGAGGCTATGCTTGTAGTTTGACTTGT
CACGCTGATATGGATGTTGTCGGTGGGCAGCTGCACCGCAAGAAATCACC
TTCTCTAGGTCACGTACTAATGTATGATGTGTGGTATAGCTCATTGCACA
GGTACATGTAGTGACCGCACACAAAAGTACAGCTGCAGCAATGTGAGAGC
AGGCTATCGTTCGTGGTGGCTGTCTGAGCTCTTGTCAGCCATTGTCAAAC
AGCACACATCACCATTGCTGCACTCCCCTTTGTGTCCTGGCATCGAACTC
AACATGCTCATCAATCTCAGGCAGCTGTCACAGCTCAACTCATGTTTGGC
TCGCTCACGCTCTACTGAGCGTTCAGCGCAGCCATGCTGTTGGCGTAACG
GCGGACTCAGCCGCGCAACATCCTTGGGTATGTATGTATGCATAGAGTTT
GCGCCGACACAGCACGAACATACGTGGCGGCACCTCAAGCGAAAGCACAT
GTACTTCAAATCAGGCACATGTACTTCATTTCACGTCCGCTTGAGGGGCG
GACGCCCTTGGCGTATACAACACTAATGTTCCCATTGCACGTGTACTCCA
ATCCGCACCCCTCGACACATGGACCATCTCATTGCGCCATGTTGTCAAGT
ACACCTATGCTTCTATCACACACGTACTTCATCCCATACATATCGACACA
CAGACTCTCTCACTGCGCGATCTTTCGTGCACAGCTCTGCAGAGCCACAG
CACATATGCTCACATCACACGTACTTCACTTCACACACTTCCAGAGACAC
ATCAATTGACCCATTTGGCGCTCTCTCGTGCACCTTGCAGAGCCGCGCAC
ACGTATGCTCCCATCACACGTACTTCGAAGTACTTCAGTTCGCACACTTC
CACAGACACAATAATCAACTCAATGCGCGCTGCGCTCTCTTGTGCACGGC
TGCTGCAGAGCCGCGCGCACGGACGGCGGCGTGCACGCGGTGTCCAACGT
CGTCGCCCTCAAGATTGCCGTAGATGCGCCGCCGGATGCATCCGCAGCAG
CAGCAGGCAGCGATGCTCAGCAAGAGGGCACGGCTCAGGAGGGGGAAAAG
GGGGAGTCGCGGAAGGGGGTGCAGGCGGGGGGGGAGGCGGAGGACGAGGC
GGCGCAGCATGAGGCGATTCGCACGGGCGTGAATGCGCACCTCCCGGATG
CGATTCGCGTGCTCAAGGTGGCGCGCGTGACCGGCGGGTGAGCGCAGGCG
GCGCGTGAACTTCATGTACTTGATGGGCATGTGCTTCAATAGCGTTGTAG
GTATGGTTCTGTGGCAATGAGTGTGATGGCTGGTCAAGACTGCGTTTGGG
GAACGTGAAAGCTCCACTAGGCCGGTGCACATGTTCAACTTCAACGTTCG
GTGTCCACACGCCCAGGCTAGTATGTTGCAGCCGCACGTGCTGCGAGCTG
TCAGCGAGTATATGGTGGCAGTATCTGAACTGATGCAAAGCGTCTGTCTC
TTCGCCTGCACGTTTTCTCCTTACATGCAGCACCAAGCCTCGGTTTTTGC
TTCAACTTGACACCCATGCTCATCGCTTTGTCAAAGACGCCGAATGGGCA
TCACAAGATATTGCAGTTATTTCATCTGCTGTGAAACACATTGGATTCGT
CTGGCGCGCCACCCTGGTCGCAACTGCTGCTTCTGCTGCACTCTCACCTG
CAGCTTCAACGCGAAGAACGCGTGCACGGGGCGACGCTATGCCTACCTAC
TGCCGACGTGCACACTGGCCGCTCCAGAGTACATTGACGGTCTGCTTGCA
GAGGCCAAGGCCTGGGAAGCCTCACAACCGCGCAGCGCTGGTGACAATGT
CGATGTTGCAGCAGCAGCAGCTGCAGCAACTTCAACTAGTGCAGCCGCCC
CGATGGCAGTTGTCGAACCGGCAGAGAACCCAGCAGCAGCAGCAGCAACT
TCAACTTCAACTGATGCAGCCGCCCCGATGGAAGTCACAGCAGCCTCAGC
AGACCAATCAGCACTGCCAGGGAGCAGCCATGGAAATGGTGCAGACAAAT
CAGGGCTGCCAGAGCACGGCCACGGCAATGGGGCCGGTACAAATGCGACA
GCAGCAACAGCGGCAGCAGCTGAGAGCAGCGCGCCCGCCGCAGACTCTGC
TGCTGAGCAACCGCAACAAGGCAGCGGCGGCGCCCCCGATGGCGACAGCA
GCGGAGACGAAGGGGACGAGGGGGAGAGGGAGGGGGCGGGGGAAGGGGAA
GGGGAAGGGGGTCCGGAGGGGGAGGAAAAGCGTTGGCTGAGCAGCCCAGC
AGTGATTGCGCGCGTGGCGGAGAAGCTGAGAACGTTCAGGATCACGCCCG
AGAAGCTGGCGCGGCTGCGCGAGGTCCTGGCGCTGTTCCGCGGAACCAAG
AACTATCACAACTACACCATCAGGTGAGAGAGAGGGAGCATATTTTTTCC
GGCCCATTTGTTTACTTGAAAAATTGCAAAATAACTACTATCCAGCGATC
ATTGCTGCTTTCATCGCCATTTGATATAGCGTGGATAATGAATTTCTGCC
AAATTTCATTGAGGGGCTTGCTGGGCACTGGTGGAAGCTGGTTTTGTGCC
GGCGCTCGCAGCATGAGGGCTATACATATATATATCTATAGTGATGCCTT
CACAAATGCACTACCGTATGTATAGGCTGCTGGCACGGTATACCAAGTTT
GCAGACACATGGTATTGCCTAGTCTGCGCGCTGTCAACGATTGAGCACTG
CATCCATGCACTATCGTATGTATGCGCTGCTGGCACAGTATGTCAAGTCT
ACGGACACATGGTGTTGCCTAGTCTACCAGTTGGCGCTCTGTCAAGCATC
GGTTGAGCACTGCATCCGCCGTCACCGCGCTCGCAGCTGGCGGCTACGAC
TCAGAACTCATGTGCACCCACACAGTCATATTGGGATGGCATGCTATGGT
ACTTAAACACACACTTACAGCCGGGTCCTGCATGTACATGCCCTCACGGT
CGTGCCTGGCCCAATTATCCTAGAAGTATTAGTCACCTCGTTTACGTACG
TACATGCCCTCACATACGAACCAATACCCTACCTACCCTCATATACACAG
CATACCCATACCCACCCTTTCACAAATACCTTCACAACCGATTACCTTAT
TACCCTTACATACATGGCATACCCATACCCTACCTACCCTTATACGCACA
GCATAACCATACCCACCACCCTTGCATACCTACATCCCCTCACAGGCGCG
CCGCCACGGACCCGAGCTGCTCCCGCGTCATGCGGAGCTTCACCGCGGGG
GAGCCCTTTGTGAGGGGGGGGGTGGAGTGGGTGCTGCTGTCGGTCGAGGG
GCAGAGCTTCATGCTGCACCAGATTCGGAAGATGGTGGCGACGGCGGTGG
ACGTGGTGCGCGCGCAGGCGTCGGTTGAGGTGGGGGAGTCACACGTTGAA
CTTCAAAGTTGTAGTGTGAGTGTACACAGCCAAAATGTTACAAATATATA
TCAATGTCAATGGACGTGGTGCGCGCGCAGGCGACCGTTGAGGTGGGGAG
TCACACCTTGAACTTCAAAGTTGTAGTGCGTGCGGATATGGTACGTGCGC
AGGCGTCCGTTGAGGCGGGGCAGCACACCTTAAACTTCAAAATTATAGTG
CGTGTTTGGATGTGGTGCACGCGCAGGTGTCCGTTGAGGTGGGGCGTCAC
GACTTGAACTTGAAATCGTGGTGGTGTGACCACACGTGGCCACGTGGAGG
CATGGGGTGTTGGATTGTGTGTGGTGCGTATGTAACAGCAGTACAGTTGA
GGCGGAGAGTCACGCCTCTGAAGTTTTCGGATGTGGCGCCGTAGCCCCAT
GCTGGAGGTGTTGGGTTGTTTGTTCTGTGCGGGTACAAGAAAAGAAGTAC
TTGCTGACGCTTGGTCAACGCTCACTGTGGCACTGATGGACGCGGTTTGA
GCATCCGTCCTGACGGTGCATGACATGTGTGTCTTGTAGCTAGCAGCGTC
ACCTTGAATTGACTTCGCGAAGGACGTCGTGTGTTGTGAAGCTGGCGACC
GATGGTGCATATGGTGTGTGAGCTCCAGAGTGCACGTTTGAAGGGAGGCG
TTTGGGTTCCGTGTGAGATTTCACGGGAGAGTAGTGTAACCACTCGCCAA
TCTTTGGCCAGCTAGGGCCGTTGGGGTAGAGCTGCAAATGTGAAGTTGCA
CTGGTTCAGTTGAAGTATCAGTGTTGGAGTAGCATTGATACTTATGTATG
CGCTCGCTCTTCCCCCCCCTCCTCCCCCCCCCCGGGATGCACTCCCAGGA
CCATGCCACTGCATTGGAGTAGTATTGATTATTGATACTTAAGTATGCGC
TGCTCCCCCCCCCCCCCCTGGATGCACCTCCAGGACATGCAACGCTCCCT
CACGCAGGCGCACATGATCCTGGGTCTCGCCCCCAGCAAAGGCCTCTTTC
TCGACAAGCTCTTCTTCAGCATGTACGAAGAGCGCTACGGCGCTGCCGAC
GCAACGAGCCTCAAGTGTCGCGAGGGCAGCGCCGCCGCGGCGCGCGTCAC
CGCGATGCGCGACCGTATCGTATCGCATATCGTAGACGGTGAAGCTGCGC
ACCTGCAGTTCTGCGCGTGGTTGGACTACATGTCCAAGTTCCCCAAGAAC
TACAGCGACACGGGGGGCGTTGACACGTCCAACTTCCGTCAGCGCAAACC
GACGCCTGCAGAGTCGGCAGTCCGCGGCGGCGGCGGCAGCGGCGGCGGCG
GCGGGAGTGGTGCGGCGACAGATGTGCAGCATACCGACGCTTCAATCAAA
GGTGGCGGCGGCGGCGGCGCGACAACAGATGCGGAGCACGCTGATGCTTC
AGCTTCAAATGATGCAGCAAAACCTGAAGTTGTGTCTGGTACAGTCGTGG
AATGCGTTGGAGAGAAGCGAAAACTTGCAGCTGTGACAGCAGACCAAGCC
CCTTCATAGGAGTGCTCACGTCTGTATGGAGTAATACACCGTAGGGTACC
ACTGACGTCTACGGTTGCGTGTCAGTTGACGTGTTGCTTGTGGCCCTGCA
TGGCATGTCATCTCAATATGCAAGTACCCAGCTATAGCAAAGTCATGGTC
GCGGCGGCTGGCTACCATGATGTACCTTGTGTGTCATAGGTATGCTTGAT
GACATTGGTTACAAAGGCCTGATTTTGTGATGGTCGATACATCCTTGACA
TGCCTGGTGTCTTGCAAAGCAGTTGTTGTTCATTAGTGCGTCGTGCGTCA
AGTACTTCGAAGTACAACACCATTGCCGTCTACACCCTGCAGCATTCACC
GCAGCTTGCCCTGATTAGACAAGGGTTTCAGTTGCGAGCGACGCCCGCCG
TCAAAAATCATTCCCTTGATCACTAGCACGTCGTGCGTCAAGTATGTCAA
CGGCACGCGCCGCCAGCGCACCGCGGCCCGCCAAAAGAACGTAGGCGCAC
GCCGCAAGCTGCAGCACCGTCTGCCAAAGGAGCGCGCCGCCCGCCAAGTG
AGCGTAGGCGCACGCCGCTAA

Coding sequence (CDS) from alignment at Contig_81:293316..299536+

>mRNA_9769 ID=mRNA_9769|Name=jgi.p|Trimin1|351137|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2055bp|location=Sequence derived from alignment at Contig_81:293316..299536+ (Tribonema minus UTEX_B_3156 )
ATGGGCAAGCCACGAGGCAACGGTCGCGGCCCTCCCGGCAAGGGTCGATA
TCAGTGGTCGAGCAAGAAAGACAAGAAAGATGCCCACAGCCGCGAGGCCC
ACGATCCAGTGGATACTCCCAGGGACCACAGGAAGCAGGAATGGGCGAAG
CCTCACCCGGGGTCCTTTGCAGGGGAGTTGAGATCTTTGCTCGACCCTGA
GCCGCTGGCGCAGCTGCAGGCCGCGGATGGTACTCCTCAGGGCAAGAAAG
CGAAGAGGAAAGTGGGCCTCGTCATCGGCTACTGCGGCACGGGCATGCGG
GGCATGCAGCTCAACAATGGCGCGCTCACGGTGGAGGCAGAGCTGGAGAA
AGCCCTGTACCTTTGGGGTGGCATCAGCAATGCCAACTTCGGCTACTTGC
AAAAGATTGGCTGGACCAGAGCCGCGCGCACGGACGGCGGCGTGCACGCG
GTGTCCAACGTCGTCGCCCTCAAGATTGCCGTAGATGCGCCGCCGGATGC
ATCCGCAGCAGCAGCAGGCAGCGATGCTCAGCAAGAGGGCACGGCTCAGG
AGGGGGAAAAGGGGGAGTCGCGGAAGGGGGTGCAGGCGGGGGGGGAGGCG
GAGGACGAGGCGGCGCAGCATGAGGCGATTCGCACGGGCGTGAATGCGCA
CCTCCCGGATGCGATTCGCGTGCTCAAGGTGGCGCGCGTGACCGGCGGCT
TCAACGCGAAGAACGCGTGCACGGGGCGACGCTATGCCTACCTACTGCCG
ACGTGCACACTGGCCGCTCCAGAGTACATTGACGGTCTGCTTGCAGAGGC
CAAGGCCTGGGAAGCCTCACAACCGCGCAGCGCTGGTGACAATGTCGATG
TTGCAGCAGCAGCAGCTGCAGCAACTTCAACTAGTGCAGCCGCCCCGATG
GCAGTTGTCGAACCGGCAGAGAACCCAGCAGCAGCAGCAGCAACTTCAAC
TTCAACTGATGCAGCCGCCCCGATGGAAGTCACAGCAGCCTCAGCAGACC
AATCAGCACTGCCAGGGAGCAGCCATGGAAATGGTGCAGACAAATCAGGG
CTGCCAGAGCACGGCCACGGCAATGGGGCCGGTACAAATGCGACAGCAGC
AACAGCGGCAGCAGCTGAGAGCAGCGCGCCCGCCGCAGACTCTGCTGCTG
AGCAACCGCAACAAGGCAGCGGCGGCGCCCCCGATGGCGACAGCAGCGGA
GACGAAGGGGACGAGGGGGAGAGGGAGGGGGCGGGGGAAGGGGAAGGGGA
AGGGGGTCCGGAGGGGGAGGAAAAGCGTTGGCTGAGCAGCCCAGCAGTGA
TTGCGCGCGTGGCGGAGAAGCTGAGAACGTTCAGGATCACGCCCGAGAAG
CTGGCGCGGCTGCGCGAGGTCCTGGCGCTGTTCCGCGGAACCAAGAACTA
TCACAACTACACCATCAGGCGCGCCGCCACGGACCCGAGCTGCTCCCGCG
TCATGCGGAGCTTCACCGCGGGGGAGCCCTTTGTGAGGGGGGGGGTGGAG
TGGGTGCTGCTGTCGGTCGAGGGGCAGAGCTTCATGCTGCACCAGATTCG
GAAGATGGTGGCGACGGCGGTGGACGTGGTGCGCGCGCAGGCGTCGGTTG
AGGACATGCAACGCTCCCTCACGCAGGCGCACATGATCCTGGGTCTCGCC
CCCAGCAAAGGCCTCTTTCTCGACAAGCTCTTCTTCAGCATGTACGAAGA
GCGCTACGGCGCTGCCGACGCAACGAGCCTCAAGTGTCGCGAGGGCAGCG
CCGCCGCGGCGCGCGTCACCGCGATGCGCGACCGTATCGTATCGCATATC
GTAGACGGTGAAGCTGCGCACCTGCAGTTCTGCGCGTGGTTGGACTACAT
GTCCAAGTTCCCCAAGAACTACAGCGACACGGGGGGCGTTGACACGTCCA
ACTTCCGTCAGCGCAAACCGACGCCTGCAGAGTCGGCAGTCCGCGGCGGC
GGCGGCAGCGGCGGCGGCGGCGGGAGTGGCGCACGCCGCAAGCTGCAGCA
CCGTCTGCCAAAGGAGCGCGCCGCCCGCCAAGTGAGCGTAGGCGCACGCC
GCTAA