mRNA_9760 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A836C901_9STRA (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C901_9STRA) HSP 1 Score: 546 bits (1406), Expect = 1.780e-195 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 3
Query: 81 MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK 926
MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK
Sbjct: 1 MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK 282
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A7S3XWK9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWK9_HETAK) HSP 1 Score: 172 bits (436), Expect = 1.910e-48 Identity = 98/233 (42.06%), Postives = 138/233 (59.23%), Query Frame = 3
Query: 180 QQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLEC-ERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYA 875
+ + A+ L ++ +G LG+ + PL VDF GK+GYR + E + KAV+ P+VWD+TAGLGRDSF++A AGCRV M ERSPV+ ++L D L RL + ++++ S + L + DS + A + P V LDPMFP K+KKAL KKDMQ+LQ L G+ + +++ LF A +VVVKRP KG L P P+ L G++NRFDVY+
Sbjct: 49 KDQGYAYSLQFNNEGALGIHCHTAKFSPLYVDFTSGKLGYRGCRPEVEQIYKAVQLKDTRTPVVWDMTAGLGRDSFILACAGCRVHMLERSPVIGSILLDGLERLGKDEDQQSKEIRSLLSLSIGDSTKMQMASVINTVPEPQVVYLDPMFPAKSKKALAKKDMQILQGLLGHGIDQAEKEEEEE--NLFNVALRLCSRRVVVKRPAKGPPLAGRP-PSFVLPGKTNRFDVYS 278
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A0G4GL10_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GL10_VITBC) HSP 1 Score: 153 bits (386), Expect = 3.030e-40 Identity = 111/270 (41.11%), Postives = 146/270 (54.07%), Query Frame = 3
Query: 183 QEACAFLLAY-DAKGHLGLSDVSNSVQP-LTVDFLEGKMGYRAA-----QQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQL-----------------------HVADSCSL---GDAFQ-----LECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRS--NRFDVY 872
Q C+FLL Y + GHL L +SV+ L+VD++ G++G R Q E+V KAV S+ P VWD+TAGLGRD+ V+A AGC V M ER P +AALL+D + RL +A+ + A + H DS L GD + + ERPDVC LDPMFPP+TK A V+KD+++LQ L ++TD D LF TA R +VVVKRP G L+ V +P+ S+RGR NRFDVY
Sbjct: 80 QSECSFLLEYRSSDGHLTLRRRGDSVRSALSVDYVGGRLGRRLVGVSRGQGPREMVAKAVTSAKVKAPCVWDMTAGLGRDAAVLAAAGCTVRMLERHPGLAALLEDGVQRLHRHTDANTRPAADSQGIFLDGTPSAALVPGPGFSKRLLGCHCMDSSGLIKPGDLQRDVPSWMTDERPDVCYLDPMFPPRTKSAEVRKDLRLLQDLLGH------SDTDADHEMLFRTALRLCRWRVVVKRPASGPPLLGV-QPSMSVRGRDTINRFDVY 342
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A1J5R019_9ZZZZ (Ribosomal RNA small subunit methyltransferase J n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R019_9ZZZZ) HSP 1 Score: 149 bits (377), Expect = 5.720e-40 Identity = 94/206 (45.63%), Postives = 127/206 (61.65%), Query Frame = 3
Query: 264 LTVDFLEGKMGYRAAQQAG--ELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAA-PEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
+ VDF+ G +GYR G + + KAV PPPLV D TAGLGRD+F++A G RV++ ER+P V ALL D L R AAA PE A +++RM L D+ ++ A ERPDV L+DPM PP+ ALVKKDM++L+ L D DAA+L A A A A +VV+K P++ D L +PKP+H + G+S R+DV+
Sbjct: 44 VVVDFVGGALGYRHRHGGGKGQALHKAVGFGKGPPPLVADATAGLGRDAFLLAAEGARVILIERAPAVQALLADGLARAAAAGPEYAA--ISARMTLIRGDARAVLPALP---ERPDVVLVDPMHPPRGNSALVKKDMRLLREL---------VGADPDAAELMAAALATAVKRVVLKWPLRADFLPGLPKPSHQILGKSTRYDVF 235
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A3A6NAP7_9DELT (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Desulfobulbus sp. TaxID=895 RepID=A0A3A6NAP7_9DELT) HSP 1 Score: 150 bits (378), Expect = 5.900e-40 Identity = 110/277 (39.71%), Postives = 144/277 (51.99%), Query Frame = 3
Query: 87 PASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNS--VQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY---------AAGP 884
P +VA PA +R LAA L L + LL + HL L N + V+F+ GK GYR Q E++++AV K P V D T GLGRD+F++A GC V + ER PV+AALL D L R PE + A+R+ L +ADS + E+ DV LDPMFPP++K A VKKD+++LQ L T ++D L A A A ++VVVKRP KG +P P P+HS G + RFDVY AAGP
Sbjct: 8 PRISVACSLPALRAQADR---LAASLGLRLADDQTGTDLLLRLTERHLELLSPGNRELTGAVFVEFVVGKAGYRRRQGGREMLLRAVGCKAKQPRKVLDATGGLGRDAFILADHGCTVRVVERHPVIAALLADGLRRALGHPETG--EAAARITLTLADSRHILADMARTGEQLDVVYLDPMFPPRSKSAKVKKDLRILQLL---------TGPEEDGGTLLAAALQTAAARVVVKRP-KGAPALPGPAPSHSHAGATTRFDVYLRPAGGGRPAAGP 269
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: UPI0003745CEA (class I SAM-dependent methyltransferase n=1 Tax=Dasania marina TaxID=471499 RepID=UPI0003745CEA) HSP 1 Score: 149 bits (377), Expect = 6.720e-40 Identity = 92/216 (42.59%), Postives = 127/216 (58.80%), Query Frame = 3
Query: 228 LGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYA 875
LG+ ++++ P++VDF G +R GEL+VKA+ S + P V D+TAGLGRDSFV+A G V M ERSP+VA+LL D L R + Q +A RMQL ++ A E + PD+ +DPMFPP K ALVKKDM+V ++ + D ++L ATA A AR +VVVKRP K L +P+ SL G++ RFD+Y+
Sbjct: 51 LGVKELASKAGPVSVDFTSGTAAHRRNMGGGELIVKAMGGSKQNRPSVVDITAGLGRDSFVLASWGFTVQMLERSPIVASLLADGLRRAQHCENFEVQDIAGRMQLWQGEAQDYLVALSDE-QLPDIIYMDPMFPPSKKSALVKKDMRVFHAI---------VGKEQDGSELLATARAKARHRVVVKRPKKSAYLADQ-QPSFSLAGKAVRFDIYS 255
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: F3KF75_9GAMM (Ribosomal RNA small subunit methyltransferase J n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KF75_9GAMM) HSP 1 Score: 149 bits (377), Expect = 8.090e-40 Identity = 91/206 (44.17%), Postives = 121/206 (58.74%), Query Frame = 3
Query: 261 PLTVDFLEGKMGYRA--AQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
P+ +DF+ G +G+R + A ELV AV + P V D TAGLGRD+F++A GC V+M ERSPVVA +L+DAL R PE V +RMQL+ AD+C A E + P+V LDPMFP ++K A VKK+M++LQ L D D +LF TA A +VVVKRP + + KP H + G+S RFD+Y
Sbjct: 70 PIVIDFVGGALGFRGKHSPHAKELVANAVGAKAGHTPTVLDATAGLGRDAFILASRGCSVIMLERSPVVALMLEDALRRAQLDPEVS--PVTARMQLYQADACQFMTALSSE-DYPEVVYLDPMFPERSKSASVKKEMRLLQQLL---------GADMDTLELFETALTVATRRVVVKRPKLAPCISEL-KPHHVVEGKSGRFDIY 262
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A831QLE4_9DELT (Ribosomal RNA small subunit methyltransferase J n=4 Tax=Bacteria TaxID=2 RepID=A0A831QLE4_9DELT) HSP 1 Score: 150 bits (379), Expect = 1.050e-39 Identity = 96/227 (42.29%), Postives = 128/227 (56.39%), Query Frame = 3
Query: 261 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALS-----KRNGHDK 926
P+ +F++G GYR + E++++AV PP V D T G+GRD+F++AG GC V +FER+PVVAALL+D L+R AA+PE + A+R+ L ADS + + DV LDPMFP +TK A VKK++Q+LQ L DDD +L A A AR++VVVKRP L KP+H L G + RFDVY P A K GH K
Sbjct: 71 PVWAEFVKGPAGYRRRRGGREMLIRAVGVKQDRPPSVLDATGGMGRDAFILAGCGCAVHIFERNPVVAALLRDGLLRAAASPET--RDSAARIHLVAADSRKFLENMTNPGGKIDVVYLDPMFPGRTKSARVKKELQILQLL---------VGGDDDTEQLLAAALNAARNRVVVKRPKSAPPLAGR-KPSHCLSGTTTRFDVYITIPAEVYAEDRGRTLKNPGHGK 285
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A2K9LLM3_9GAMM (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Ketobacter alkanivorans TaxID=1917421 RepID=A0A2K9LLM3_9GAMM) HSP 1 Score: 147 bits (372), Expect = 3.240e-39 Identity = 96/204 (47.06%), Postives = 120/204 (58.82%), Query Frame = 3
Query: 261 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
P+TVDF+ GK G+R + E++VKAV K P V D TAGLGRDSF++A AG V ER P +A LL D L R +PE A VA R+QL + S+ A E ERPDV LDPMFP +TK ALVKK+M++ + + D DA L A AR +VVVKRP K D+ V KP + L G+S+RFDVY
Sbjct: 64 PVTVDFIHGKTGFRFMRAQHEMIVKAVAGRSKDPLRVMDATAGLGRDSFILAAAGFAVTAIERHPAIACLLADGLDRARYSPEGAA--VAERIQLQWGVAHSIL-AQLAESERPDVVYLDPMFPERTKHALVKKEMRLFRDV---------VGDDMDADALMEIALEVARKRVVVKRPRKADS-VAGRKPGYQLLGKSSRFDVY 254
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A3B0V7D3_9ZZZZ (16S rRNA (Guanine(1516)-N(2))-methyltransferase n=2 Tax=root TaxID=1 RepID=A0A3B0V7D3_9ZZZZ) HSP 1 Score: 147 bits (372), Expect = 4.330e-39 Identity = 89/204 (43.63%), Postives = 123/204 (60.29%), Query Frame = 3
Query: 261 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
P+ +F++G GYR + E++++A PP V D T G+GRD+F++AG GC V +FER+PVVAALL+D L+R AA+PE ++ A R+ L ADS + + + DV LDPMFP +TK ALVKK++Q+LQ L +DD +L A A AR++VVVKRP L KP+H L G + RFDVY
Sbjct: 73 PVWAEFVKGPAGYRRRRGGREMLIRAAGVKHDRPPSVLDATGGMGRDAFLLAGCGCTVHIFERNPVVAALLRDGLLRAAASPET--RESAERIHLVAADSRKFLENMTNQGKDIDVVYLDPMFPERTKSALVKKELQILQLL---------VGGEDDTEQLLAAALNAARNRVVVKRPKTAPPLAGR-KPSHCLIGTTTRFDVY 264 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9760 ID=mRNA_9760|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=936bp|location=Sequence derived from alignment at Contig_81:238404..240738- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCAGTTACGCCTTCCGCCAGTTCTGCTCGTGGCCTTCGGGAGTGCCGGCback to top protein sequence of jgi.p|Trimin1|351130 >Trimin1|351130|estExt_Genemark1.C_Ctg_810040 ID=Trimin1|351130|estExt_Genemark1.C_Ctg_810040|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLback to top mRNA from alignment at Contig_81:238404..240738- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2335bp|location=Sequence derived from alignment at Contig_81:238404..240738- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_81:238404..240738- >mRNA_9760 ID=mRNA_9760|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=849bp|location=Sequence derived from alignment at Contig_81:238404..240738- (Tribonema minus UTEX_B_3156 )back to top |