mRNA_9614 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348661
Unique NamemRNA_9614
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A836CFL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL7_9STRA)

HSP 1 Score: 307 bits (786), Expect = 1.640e-87
Identity = 788/788 (100.00%), Postives = 788/788 (100.00%), Query Frame = 1
Query:    1 MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASXXXXXXXXXXXXXXXXXXXANXTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTAKXXXXXXXNCTNLASKTCNTXXXXXXXXXXXXXTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF 2364
            MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASXXXXXXXXXXXXXXXXXXXANXTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTAKXXXXXXXNCTNLASKTCNTXXXXXXXXXXXXXTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF
Sbjct:    1 MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASXXXXXXXXXXXXXXXXXXXANXTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTAKXXXXXXXNCTNLASKTCNTXXXXXXXXXXXXXTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF 788          
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A835Z0I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.560e-50
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    7 CTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTA 339
            C    +GCDFSPPSSFKPSAGSSATQAECNQY +VQGSPQVAKLVPF+FTALPTGFT ISSLQVKA AAYCL T+VKLNTNYFTAK++KG YYDLSGLTICGVRGT+QP+A
Sbjct:   20 CPAGTSGCDFSPPSSFKPSAGSSATQAECNQYSIVQGSPQVAKLVPFRFTALPTGFTSISSLQVKAGAAYCLCTSVKLNTNYFTAKSNKGTYYDLSGLTICGVRGTAQPSA 130          
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A835YP20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP20_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.520e-17
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 2026 PSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXX-CYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILM 2331
            P   CGD +CG+ CYISSF+ GLC+              C+ T +GA+C   NF +PKP     NGGGC EN CN+ VKQ TG +A+CCP NC  R L DIL+
Sbjct:  956 PDTGCGDPACGYLCYISSFTPGLCSGAPNNCSGANGVCGCFPTFNGASCKADNFPDPKPVPLPTNGGGCQENQCNATVKQATGGAASCCPYNCARRTLRDILL 1058          
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A835YQU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.360e-9
Identity = 52/152 (34.21%), Postives = 61/152 (40.13%), Query Frame = 1
Query: 1993 TATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCA---------------------------------------ENNCNSFVKQGTGNSAACCPSNCPARRLADILM 2331
            T   PN T   P   CGD +C F CYISSF+ GLC+             C   ++       NF NPKP     NG GC                                        EN CN+ VKQ TG SA+CCP NCPAR+L DI+ 
Sbjct: 1049 TTKPPNLTPATPVTGCGDAACNFKCYISSFTPGLCSGTPNN--------CVGGMA------DNFPNPKPVPLPSNGAGCQALLPGAARDACAERAPAREGRARGASEATSNPGGARRSLENQCNATVKQATGGSASCCPYNCPARKLRDIVF 1186          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CFL7_9STRA1.640e-87100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0I3_9STRA6.560e-5084.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YP20_9STRA4.520e-1748.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQU2_9STRA2.360e-934.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:966441..975716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348661|estExt_Genemark1.C_Ctg_290115
Hectar predicted targeting categoryother localisation
TranscriptId348983
TrackFilteredModels1
ProteinId348661
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348661gene_9614Tribonema minus UTEX_B_3156 geneContig_29 966441..975716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9614_12exon_9614_12Tribonema minus UTEX_B_3156 exonContig_29 966441..967110 -
exon_9614_11exon_9614_11Tribonema minus UTEX_B_3156 exonContig_29 967827..967957 -
exon_9614_10exon_9614_10Tribonema minus UTEX_B_3156 exonContig_29 968481..968640 -
exon_9614_9exon_9614_9Tribonema minus UTEX_B_3156 exonContig_29 969495..969595 -
exon_9614_8exon_9614_8Tribonema minus UTEX_B_3156 exonContig_29 970207..970369 -
exon_9614_7exon_9614_7Tribonema minus UTEX_B_3156 exonContig_29 970604..971041 -
exon_9614_6exon_9614_6Tribonema minus UTEX_B_3156 exonContig_29 971690..971785 -
exon_9614_5exon_9614_5Tribonema minus UTEX_B_3156 exonContig_29 972381..972608 -
exon_9614_4exon_9614_4Tribonema minus UTEX_B_3156 exonContig_29 973296..973715 -
exon_9614_3exon_9614_3Tribonema minus UTEX_B_3156 exonContig_29 974443..974736 -
exon_9614_2exon_9614_2Tribonema minus UTEX_B_3156 exonContig_29 975341..975517 -
exon_9614_1exon_9614_1Tribonema minus UTEX_B_3156 exonContig_29 975693..975716 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9614UTR3_9614Tribonema minus UTEX_B_3156 three_prime_UTRContig_29 966441..966975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9614CDS_9614Tribonema minus UTEX_B_3156 CDSContig_29 975693..975716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348661Trimin1|348661|estExt_Genemark1.C_Ctg_290115Tribonema minus UTEX_B_3156 polypeptideContig_29 966976..975716 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9614 ID=mRNA_9614|Name=jgi.p|Trimin1|348661|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2902bp|location=Sequence derived from alignment at Contig_29:966441..975716- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCACCGTGACCGTGACCGGCTGCGACTTCAGCCCTCCATCGTC
CTTCAAGCCATCCGCCGGCTCTAGCGCGACCCAAGCCGAGTGCAACCAGT
ACGTGCTTGTGCAGGGCTCGCCGCAGGTGGCCAAGCTCGTGCCGTTCCAG
TTCACCGCACTCCCAACTGGGTTCACGTACATCTCATCTCTGCAAGTCAA
GGCCAGCGCCGCGTACTGCCTCTACACGAACGTCAAGCTCAACACCAACT
ACTTCACCGCCAAGACCAGCAAGGGCGTGTATTACGACCTGAGTGGCCTC
ACCATCTGCGGCGTGCGCGGGACATCGCAGCCCACCGCGGGCCCCACGGC
TCAGCCATCTGCCGCAGCAGACCTCACGCCTCCGCCGACCACCGCGCAGC
CAACTTCAACTCCCACTTCAACGCCAACGTCTCAGCCGACCGCAAACCCG
ACCAGCAACCCGACCGGCAACCCAACTGCCAAGCCCTCGGCATCGCCCAC
TGCGAACCCCACTGCAAACCCCACCGCAAAGCCAACGGCTGCGCCAACTG
GACAGCCCACTGCCAAGCCCACCGCAGAGCCCACTGCAGCTCCCACCGCA
GTGCCCACCGCCAAGCCCACCGCCGAGCCAACAGCCGCACCCACCGCCAA
GCCGACTGCTGAACCGACAGCAGAGCCTACCGCGAAGCCCACTGCTGAAC
CCACTGCTGAGCCCACTGCCAAGCCCACTGCAGAGCCCACCGCTGAACCC
ACCTCTAAGCCAACTGCAGAGCCCACCGCTGAACCCACCTCTAAGCCAAC
TGCGGAGCCCACCGCTGAACCCACCTCTAAGCCAACTGCTGAACCCACAG
CCGAGCCCACTGCCAACCCCACCGCTGAGCCTACGGCGGAGCCCACTTCC
AAGCCAACTGCAGAGCCCACCGCCAAGCCAACTGCGGAGCCCACCGCTGA
GCCTACTGCCAAGCCAACTGCCGAACCGACTGCAGAGCCCACAGCTGAGC
CCACTGCCGAGCCCACCGCTGAACCTACCTCTAAGCCCACTGCGGAACCG
ACTGCTGAGCCCACCGCCAAGCCGACTGCGGAGCCCACGGCGGAGCCCAC
AGCCGAGCCCACTGCCAAGCCCACTGCTGAGCCGACCGCGGAGCCAACCG
CTGAACCGACTGCCGAGCCCACTGCCAAGCCGACAGCCGAGCCGACTGCT
GAGCCTACGGCAGAGCCCACCGCCAAGCCGACCGCAGAGCCAACTGCCGA
GCCCACCGCAGAGCCCACTGCCAAGCCGACTGCAGAGCCCACCGCTGAGC
CAACTGCCAAGCCCACTGCCGAACCAACTGCAGAGCCCACCGCCAATCCG
ACCGCTGAGCCCACGGCTGAGCCTACTGCCAAGCCCACTGCGGAACCGAC
TGCAGAGCCCACTGCCAAGCCGACCGCCGAACCGACTGCAGAGCCCACTG
CCAAGCCGACCGCTGAGCCAACTGCTGAGCCTACTTCTAACCCTACCAGC
AAGCCTACAGCGGAGCCCACTTCAAGCCCTACGGCCAACCCTACCAGCAA
GCCCACAGCAGAGCCCACTTCAAGCCCTACGGCCAAGCCTACGGCAGAGC
CCACTTCAAACCCTACGGCCAAACCCACTACTGCAAGCCCTACCGCCAAC
CCCACCGCTACGCCGACCACCGCGCAGCCGACAGCAACGCCTACTGCCAA
CCCCACGAGCACCCCTACCGCCAACCCTACCAGCACCCCCACTGCCAACC
CCACCAGCACCCCCACTGCCAACCCCACAAGCACCCCTACCGCCAACCCT
ACAAGCAAGCCTACCGCCAATCCCACGAGCACGCCAACAGCCAATCCCAC
CGCCACCCCCATTGCGGGGCCAACGCCGACTCCAACCACTGCAAAGCCCA
CGGCAACACCCACCGCCAACTGCACCAACCTCGCCAGCAAGACTTGCAAC
ACCGTTGTCGGCACCACCCCTACCACGGGCACCTGCTACACGACCGCCAC
CGCACCGAACGGCACAGTCGGCGGCCCCAGCGCGGACTGCGGAGACGTGT
CATGCGGGTTCGCGTGCTACATCAGCAGCTTCTCGAACGGGCTCTGCACA
GGTGCACCGAACGGCAGCTGCGCAAGTGGCCAGTGCGGCTGCTACGCCAC
CGTCTCCGGAGCCAACTGCGGCTTCACCAACTTCCAGAACCCCAAGCCCA
GTGGGAACATTGGCAATGGTGGCGGCTGCGCGGAGAACAACTGCAACTCG
TTCGTCAAGCAGGGCACGGGCAACAGCGCGGCCTGCTGCCCATCCAACTG
CCCCGCCCGCCGCCTTGCTGACATTCTCATGGGGGAGGCTCAGGCCGAAA
CTGAAAGCCAGTTCTAGACAGCACACCCCTGGGCCACTAGACCCCCTATT
GCGACCCCCATGCACCGACGTTAGCCCCTTTCTGGTAGTGCAACTGCTGC
AGCAGAGCCAAGGTGGTTCCCGGCCGCTGTTCCCGCGCCTTGAAGGCACT
TAATTGACCTCTGCTTTCCATGATACAGATGCATTTTGCTTATGGATCCA
AGTTGCGCTCGGCGCTTGTTTTCGCGACGAGGGTTTCATGGCGCAGCGAC
TTTGTTCCGCTACGGCCAGCTCCCAGTCTGAGCGTCAGTAAGTTTAGGTA
TGAGGCGTGCTTAGCATGCCCATACGCGTAGGTAATACTAGGCATTTTGC
CCGTCACGGTGGTTTTGCGCTCCATGCGTCAGCGCAACTACAGTGTTTCG
CAGGTTTCGTGGTACCATAGCTGCGTGGCACTGCACAACGCATCGCCGCG
GGACTCCTGTGCCGCCCCCCGTGCGTTGGTGCTGCTGATCAGGATCTGGC
GGTGGCCGATTCTACCCTCTTTGAAATTCAATCCACAAGTTCAAAGTTTG
TG
back to top

protein sequence of jgi.p|Trimin1|348661

>Trimin1|348661|estExt_Genemark1.C_Ctg_290115 ID=Trimin1|348661|estExt_Genemark1.C_Ctg_290115|Name=jgi.p|Trimin1|348661|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=789bp
MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQ
FTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGL
TICGVRGTSQPTAGPTAQPSAAADLTPPPTTAQPTSTPTSTPTSQPTANP
TSNPTGNPTAKPSASPTANPTANPTAKPTAAPTGQPTAKPTAEPTAAPTA
VPTAKPTAEPTAAPTAKPTAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEP
TSKPTAEPTAEPTSKPTAEPTAEPTSKPTAEPTAEPTANPTAEPTAEPTS
KPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTAEPTAEPTAEPTSKPTAEP
TAEPTAKPTAEPTAEPTAEPTAKPTAEPTAEPTAEPTAEPTAKPTAEPTA
EPTAEPTAKPTAEPTAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTANP
TAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTSNPTS
KPTAEPTSSPTANPTSKPTAEPTSSPTAKPTAEPTSNPTAKPTTASPTAN
PTATPTTAQPTATPTANPTSTPTANPTSTPTANPTSTPTANPTSTPTANP
TSKPTANPTSTPTANPTATPIAGPTPTPTTAKPTATPTANCTNLASKTCN
TVVGTTPTTGTCYTTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCT
GAPNGSCASGQCGCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNS
FVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF*
back to top

mRNA from alignment at Contig_29:966441..975716-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9614 ID=mRNA_9614|Name=jgi.p|Trimin1|348661|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9276bp|location=Sequence derived from alignment at Contig_29:966441..975716- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCACCGTGACCGTGACCGTGATGCCTGCTCGGTAAATTGCGTC AGTGTGACTCACTGGATGGGCTCGCGGGCAGTGCACTCGTATCTTGACTG GATGGGCTCGCGGGCAGTGCACTCAAACTTTGCTAATGAATTTTCAATTC ATTCTCTGCAACCTGCTGCTGCTGCGGTGCGCTCCTGCTCTGCGCGCAGG GCTGCGACTTCAGCCCTCCATCGTCCTTCAAGCCATCCGCCGGCTCTAGC GCGACCCAAGCCGAGTGCAACCAGTACGTGCTTGTGCAGGGCTCGCCGCA GGTGGCCAAGCTCGTGCCGTTCCAGTTCACCGCACTCCCAACTGGGTTCA CGTACATCTCATCTCTGCAAGTCAAGGTGAGAATCGACTGCGATCAAATG GCTGCTTTGAACATCCGATCTGCCAAGTCACTGCGCATCAGGATAGTATT GGTCGCTGAGGTTATACACTGACAGACTGAGTGTGCGCGAGTGCAGTGAT GCACAGAGTGCACGTGGCAGCTTGAGCGCTGATTCCACACTGTCCGTTCA ACTTGAAGCTACACGACTGCAGCATGACGTTGTGCGTGAAGTAGATGCAG CGGGTACTTGATGTCTCCGCATGCACTTTGATTAATATTACACTTCTTTT TTGAGTCTTTGAATTCAAGACTTGAAGTTTGCTTCCGACTCTCAGCATAC AGTGACTGCAGTCGCCTCTACTGTACACGCATTCTGCGTAAAGCGTTTTT TTTGCAGGCAGCATCATGATACTTCAAGTACTTCGAAGTATATCATTATG TCAATGATTGTTCTGCGGTTCAAGAGGCATGTTGCCGTCGCTTGATGAAT CACATGTCTGCCTGGTACAGCCCACCTCCTTCATACTCTGCAGCACAGCA CTGGCAGCACACTCATATTGTGCAGCACACCCTGGACCTGACATGGACGC CTGTCGTCGCTCGCATAATGATTGCGCCAGGCCAGCGCCGCGTACTGCCT CTACACGAACGTCAAGCTCAACACCAACTACTTCACCGCCAAGACCAGCA AGGGCGTGTATTACGACCTGAGTGGCCTCACCATCTGCGGCGTGCGCGGG ACATCGCAGCCCACCGCGGGCCCCACGGCTCAGCCATCTGCCGCAGCAGA CCTCACGCCTCCGCCGACCACCGCGCAGCCAACTTCAACTCCCACTTCAA CGCCAACGTCTCAGCCGACCGCAAACCCGACCAGCAACCCGACCGGCAAC CCAACTGCCAAGCCCTCGGCATCGGTGAGCAAGTTGCCCGATCTGTGTAC CATGTGAAGCAGGCAAAACGGTGTACCTTGTGAAGCAGGCAAACCTCTTT CCGCCACAACTATGACCCTGTTGCGCTTTGGCTGGTCCAGCTTCAAGTTT GGGCCTGCCACCACTGACAACGCAGACAATTGCAGACATGATATGCGGAT GCCGCATGCGCAAGGCAGCACCAACTTGAAGGGCGTGGCCTGACCGGCAG CAGTACACGAGCCTCGCAGCCGGTTGCCACGTGTAGCAGGTTCTGATGCT GAGGCATCAGGTTCGTTTTGTATGGTGTTGCGTGACCTGCTGCCGGTTGC ATAAATGCACATGCACCGCCATTTGATCAGCTCTGCAGGTTGCGTCAATC ATGCGATCTGCAGTACACATGTCAACTTGAATGAGCATCAACACAGGTAC GGTGCATGCGTTGACGTTGCAGCACCACTGTGCCTGCTGCGAAAGCTGCA GCCACCAGCTGCGCACAGAGCCACTTCAACTTGAACTGCTGATGAGTCAC CTCACGGCAGCCACGGCCTCTGTGTTGGCACGAGCTCAAAGGCCACAGCT TTAATGTTGTCAGATGCGACTGACAGCTCTGCAAGCTGTCGATGCGCAAG CAAGTTGTAGTTCTGATCGCGCAGACGTGGTACCACGAGCACATTCAGGT GTTGCTAATGCAGACCACATTTCTTGTTCTTGCTGTCCGTTGCAACTGCA GCCCACTGCGAACCCCACTGCAAACCCCACCGCAAAGCCAACGGCTGCGC CAACTGGACAGCCCACTGCCAAGCCCACCGCAGAGCCCACTGCAGCTCCC ACCGCAGTGCCCACCGCCAAGCCCACCGCCGAGCCAACAGCCGCACCCAC CGCCAAGCCGACTGCTGAACCGACAGCAGAGCCTACCGCGAAGCCCACTG CTGAACCCACTGCTGAGCCCACTGCCAAGCCCACTGCAGAGCCCACCGCT GAACCCACCTCTAAGCCAACTGCAGAGCCCACCGCTGAACCCACCTCTAA GCCAACTGCGGAGCCCACCGCTGAACCCACCTCTAAGCCAACTGCTGAAC CCACAGCCGAGCCCACTGCCAACCCCACCGCTGAGCCTACGGCGGAGCCC ACTTCCAAGCCAACTGCAGAGGTAATTGCGATAAACGGTTGAGCATTGCT GAGCGTCACTGCCAGCAGCTTCTTTGCGTAGGCGAGTGGTGGCTACATGG CTTTCGATCGCGCGCGTGCTGTGAAGTGCGCATGTCGCATTGTATGCATC ATCAATACTTCGCTGACAGAATTAGTCGCGCAATGGCGTGTGCTGTGTCC GTGTCAACAAGGCTCAAATCAGGCTTACACCAATATTCGATATGAAGGGG ACTCAGCAGCTGTAGGGCCTTTGCGCACTGCTGCCAGCCATTGCACCTCC TCACGATTGGTCTGGGCATCTGCCTGTCTAAGTTTGTAGTTGCCATTACA CGTTTTGTTAGTGTGCCTTTGACGTGCGCATGCCGCAGGCCTTGCATGAA CTTTTGCATTGCTGATCATCAAGTAGTGTATGCAGTACGAAGGGACCGGT ACGTGCCTTCGGTGCGCACGTGTGTACCGTCCGTTGCACTTAGGGTTGGG TTGGGTTAGGGTTAGGTTACGACTATGGCTGCTGCATTCGCCTCTGCTCC AGTACGTCTCTCAGACATCGATGCAGCGCTGCCCTAAACCCTGCTATTGC ACATCTTGCCCTGCCCTTTGCAAAGTCGTGCGGTGCCAAGTGTGGATAGC TAATCCCTTCTTGTGCTGCAATACAACTTCACAGCCAACTGCCGAGCCCA CCGCTGAGCCCACCGCCAAGCCAACTGCGGAGCCCACCGCTGAGCCTACT GCCAAGCCAACTGCCGAACCGACTGCAGAGCCCACAGCTGAGCCCACTGC CGAGCCCACCGCTGAACCTACCTCTAAGCCCACTGCGGAACCGACTGCTG AGCCCACCGCCAAGCCGACTGCGGAGCCCACGGCGGAGCCCACAGCCGAG CCCACTGCCAAGCCCACTGCTGAGCCGACCGCGGAGGTGAGCTGTAACTC AACATCGAAGCAAATGTGTGATGCGGACGACCAGAGGCTTATGACATGCA CCAGCTGTGCTTTTGCCTTGAAGCACTTCCATGCTGCTTTCTGGCATGTC ATTAGTAATTTTCCTGTAGCAGACGTGCGCAGTTGCAAGCCGCGTGGCAA ATCCATTTTGAAGCTACTTAAGAGGCAGGGTTATTGGATTGGTGGTTCAC CTCTCGCCTCCCCGCACTAACGAAACGAGCTAGTGCATGGCTTGCACACC AACGTTGTGCACAGGTAGGTATGTATATGGCAACATGCAAGCCACTCACG CGAGCACCCGCGATGGCCGAGTCATTGCGCAGCACAGCTACATGAAGTGG CTGTATATTGAGTATACTCTACATGAAGTGGCTGTATATTGAGTATACTC TGTACCCAAATTCCTTTTGTGACGGCGAACAAGCACTTGCTCAGCTGCTT GTAGTTTGGTGCCATGTGCAATGAGGCAAGCTTGTGCTGTGCCTGCGCTC TCCGTTCACTGCCTATAACTGCAGTGCCTACATATTGAGTGTTTGCTCAT TCCCACGACTGCCGCTTGTGCAACTCTGCAGCCAACCGCTGAACCGACTG CCGAGCCCACTGCCAAGCCGACAGCCGAGCCGACTGCTGAGCCTACGGCA GAGCCCACCGCCAAGCCGACCGCAGAGGTGATTGTGATGACCGGTTGAGC ACTGCTGAGCATGATTGCGTGTGTGTTCCTTAGCGATGTCTAGCGGGCAT TCCGATCGTACATTGTGTGTGGTGATGGGCATGACATCCATCAGTGAAGT TGTCGTTGGCAGAGTCAATTGAACGGTATAGGGCACTCCATCCGTGTCAA GAGTACCTACTGGTAGTGCTTGAAGTACATTGTTGCCATGGACTTCAAGG GAATATGGCAGCTGTAGGCCACTGTTTACTGCCACCAAACAATCATGAGA CCTCCGCACAATTCGTCTGCAGATCCTTCTGCTGAAGTTTGTGGTCACCA ATGCGCGGCTGTAGAGTGCGTTCCACGTGAGCATACCGCCAGGCCTTGCA TGCGTTAGTGCGTTGTGTATCGTCAAGTGGTACTTGCAGGACAAAGCAGG AAACGGGATACTGTCTGTCATGGGTGCACAGGCTCGGACCGTTGCAAATG TTACATGGCTGTCGCATGCGCCTGTGCCTCAGGACTGCCACGTACCCCCA TTCTCCAATGCTGGGTTGCTCGAACCCTTCTTGTTGCGCATCATGTCTTG CCATGACCGTTGCGTGGCCGAGCAGTGTCGACGTGCCTAGCTGATCCGTT CTCGTGCTGTGCGACACCATTGCAGCCAACTGCCGAGCCCACCGCAGAGC CCACTGCCAAGCCGACTGCAGAGCCCACCGCTGAGCCAACTGCCAAGCCC ACTGCCGAACCAACTGCAGAGCCCACCGCCAATCCGACCGCTGAGCCCAC GGCTGAGCCTACTGCCAAGCCCACTGCGGAACCGACTGCAGAGCCCACTG CCAAGCCGACCGCCGAACCGACTGCAGAGCCCACTGCCAAGCCGACCGCT GAGCCAACTGCTGAGCCTACTTCTAACCCTACCAGCAAGCCTACAGCGGA GCCCACTTCAAGCCCTACGGCCAACCCTACCAGCAAGCCCACAGCAGAGC CCACTTCAAGCCCTACGGCCAAGCCTACGGCAGAGCCCACTTCAAACCCT ACGGCCAAACCCACTACTGCAAGCCCTACCGCCAACCCCACCGCTACGCC GACCACCGCGCAGGTGAGCCCATGGCCACAAAAAGACGATGGCATGGCTT GTCACTGTTTGAACTTTGCACCGCAAGGATGGCCTGTGTGCACTTCAAGA AGGCATTGCTGTCTCTGCGCAACATGCCGACCTGTACAATGTGATTGCCG CTTCACGCCACTGTTTTAAAACACGCGAGTACTTCCGCGCAAGATGCTGA TGAAACGGTGCCTGTGTGCGTGTGTGTCCCTTATTCCTGCTGCGCAGCCG ACAGCAACGCCTACTGCCAACCCCACGAGCACCCCTACCGCCAACCCTAC CAGCACCCCCACTGCCAACCCCACCAGCACCCCCACTGCCAACCCCACAA GCACCCCTACCGCCAACCCTACAAGCAAGCCTACCGCCAATCCCACGAGC ACGCCAACAGGTATGGCCGTCAACAAGTGTAGCACACGTAGCACATGCGT TCACGCGACCGTACAATCGAAGCAAGCGTGCACTTTGTTGAGCAGGAAAC TGCCTGATATTTTCTGGCTGGAATGGGACGCGTGCTGAAAAATTGCATTT GAAGTTTGTTGCGTTTAATTGCAATTTGACTGCAAGTCTGAGCTGTCCAT GTAGCATGTGTGTCGCCAGACAGAGGTACAACGCACAGCGCATGCCTTGT TCAGCACACCTGCAAGTTGCCGCTTGATGTAGTACATACCGCTATCACGT GCGCACTGTGGCTCAGGCTCGTCTACCTCTAAAATCCCAAATCTTAGATA GGTTGCAAAAAACGTATTTGGCCACACAAATACGGCGTATTTGGGACGTA TTTGGCAACCAGGAATACGTCGTGAGCAAACTTCAACATGATGTTATGCT GCGTGAAGGGCATATTTGTGGGGCATGCGGTGAGTCTGCTCAATTCCGAG CATACAGTCTGCCACAAAAGGGGCACTTGAACTCCAAAATAAATTTCAAA ATACGCTTTTTTGCAACCCTGCAAATCTATCATCATGCTTAACTTCAATA ACCGTCTTGCTGCCCAAACAGCCAATCCCACCGCCACCCCCATTGCGGGG CCAACGCCGACTCCAACCACTGCAAAGCCCACGGCAACACCCACCGCCAA CTGCACCAACCTCGCCAGCAAGGTACGTCTCAAAACAGGGCAGGAGCAGT AGAAGTGGTAGGGTGGGGTAGGCTACATGATGACTTTTACAACAGAAGCA TGATTTACCATTTTCAGCGCTGCTGTCTCAGGCACATCAACTGCTTGCAC TTGGCCAGCAAGGTGAGCCTCAAAACAGGGCAGGAGCAGTAGAAGTGGTA GGGTGGGGTAGGGTAGATGACATGATGAATGCCACAACAGGAGCACAATG TTGTTTTCAGCGGTGGTGCCTCAGACATACCTGGACTCGCCCCATGTGTG ATGGGGGTATACTACAGTAGTGAGTGGCTTGATTGACGCTGCAACCGCAG GTGCCGAGTTGACGTGTCTTTATTTGTATCGTTCTTTTGCGTGGATAAAA CTGCAACAGAATGGAGTGTGTCTCTCCACAAAACAAGCAATTTAGCCACG ACGGACTTGTGTCTCCCCTCACGACAAGCAATCTGGCCACTTCTTTTGCT TTCTGCGTGATAGAAGTATATTGTTTGATGTTGTCGTGCAGAAGTGGTCG TGCGAGCATCAATGCTCACGGCGTTGTTGGCTGGCCCGCAGTCTCGCGTG CAATGCCGCTGGCAACGCACCGCGCTGCATATGATCCTTGTGCACTGACG CAGATACCTGGCTCATGCCACTGAGATGTACACTTCAATGCTTTGAAAAC CCACACACCTACACACCTGTCTCTGAACGCTCCGAAAAGCCACCCACTAT AGTACAGGCAGCCGCACTACCCTTACCATGTGCGTGACTCTAGTGCATAC ATCATGAGTGTTCGGGCGAGCAACATCATGTTTTCAACTTATTCTATCCT TTGTGTGCTCGGGCACCACCCTGCAGACTTGCAACACCGTTGTCGGCACC ACCCCTACCACGGGCACCTGCTACACGACCGCCACCGCACCGAACGGCAC AGTCGGCGGCCCCAGCGCGGACTGCGGAGACGTGTCATGCGGGTTCGCGT GCTACATCAGCAGCTTCTCGAACGGGCTCTGCACAGGTACGGAGCTCATA CGCGGTGTTGCGCGTGTAGCTGCAGTTGAAGAGACGTGTCATGCGGACAC GTGTGCTACATCAGCAGCTTTGCCTCCGGGCTCTGCACAGGCACGGAGGT CAAACGCGGTGTGTTGCACACGTAGCTGCAGCTGAAGTGTTTGATTACGC GTCTTTTCATGCCAGGTGCACTAAATACGCTCACTCAGCCTGTCACCAAC CAACCTGGGCTTTTCTGCACCCTACGCCAAGTAGAATGGAAAAAATCACC AAGCGGAATTTGTGGGTCCCTGCAAGTGAGAACCACTAATGAACCATTTC TGACGTCTGAAAGTCTGTCATGTGCTGACAGGTGAAGACGCTCACCACCA AGCCTGTCACCGACCACCTGGGCTTTTCTGCTCCCTAGGCTAAGTAGAAT CAATAAACCACGAGCGTGAGTTGGCAGACCCTAAGCGAGAATCACTAATA AACCATTTCTGGAGTCTAAAAGTCTGTCATGCGCGCGTGCACGCGTCTCT CCATGCCAGGTGCACCGAACGGCAGCTGCGCAAGTGGCCAGTGCGGCTGC TACGCCACCGTCTCCGGAGCCAACTGCGGCTTCACCAACTTCCAGAACCC CAAGCCCAGTGGGAACATTGGCAATGGTGGCGGCTGCGCGGTGAGTAAAA GCAAAGCAGCGTACGTCAGCAAAAAACGAGTATTTGTCCAACGAATGAGC GCTGGTCTGACGGTGGTGCTGCGGAAAGAAACCGAGAAGCTGCCATGTAC GCTACTTGTGTTCGTCCAGGTGGTAGGGTGAGTTCGGTTTGCAGCTTCTG ATACACGCATGACATGATATAAGAAGCCTCGAAGCATCCACTGCACTTGT CAGGCTGTGTACGCAGCATCATGTAACGTCGTTTGGTGCGCAATGCGCAC ATTACTTCCTGAAGACAATGCTGATCGGTGCCATTCCGTGCACCAGACTG AGTGGATCGGGCAATTGTCGTACACAAAGTACTTATACTTGACGGAGGGT CACAAAACGCATAGCGAATGTTTGGGTGCTCGACAACAGGGACATGCTCA ACTGCCTGCTGCATCATGGCACTGATTTATGTTTGGAGCTCCCATTCACT GACAGTGCCTACGCCAATCCCCATTCCTCCTTGGCTGTTGGTGTGCACAA TGTCATGTTGACCAACTTGCACTGGCAGCTGTAGTCAAAGACCTCGCACT TCTTGTGGAACACATACGCTAAGACGTGTTATGTGCGGACCGCGATAATA GCATCCTGTACAGCTTTGTTGAAACCCTACTGCGCTTTGACACGCTGGAG ATTTAATGGCATCTGATGAACACCGCCTGCTTTCACTGCTGCGTACGCGC TTGCAGGAGAACAACTGCAACTCGTTCGTCAAGCAGGGCACGGGCAACAG CGCGGCCTGCTGCCCATCCAACTGCCCCGCCCGCCGCCTTGCTGACATTC TCATGGGGGAGGCTCAGGCCGAAACTGAAAGCCAGTTCTAGACAGCACAC CCCTGGGCCACTAGACCCCCTATTGCGACCCCCATGCACCGACGTTAGCC CCTTTCTGGTAGTGCAACTGCTGCAGCAGAGCCAAGGTGGTTCCCGGCCG CTGTTCCCGCGCCTTGAAGGCACTTAATTGACCTCTGCTTTCCATGATAC AGATGCATTTTGCTTATGGATCCAAGTTGCGCTCGGCGCTTGTTTTCGCG ACGAGGGTTTCATGGCGCAGCGACTTTGTTCCGCTACGGCCAGCTCCCAG TCTGAGCGTCAGTAAGTTTAGGTATGAGGCGTGCTTAGCATGCCCATACG CGTAGGTAATACTAGGCATTTTGCCCGTCACGGTGGTTTTGCGCTCCATG CGTCAGCGCAACTACAGTGTTTCGCAGGTTTCGTGGTACCATAGCTGCGT GGCACTGCACAACGCATCGCCGCGGGACTCCTGTGCCGCCCCCCGTGCGT TGGTGCTGCTGATCAGGATCTGGCGGTGGCCGATTCTACCCTCTTTGAAA TTCAATCCACAAGTTCAAAGTTTGTG
back to top

Coding sequence (CDS) from alignment at Contig_29:966441..975716-

>mRNA_9614 ID=mRNA_9614|Name=jgi.p|Trimin1|348661|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2367bp|location=Sequence derived from alignment at Contig_29:966441..975716- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCACCGTGACCGTGACCGGCTGCGACTTCAGCCCTCCATCGTC
CTTCAAGCCATCCGCCGGCTCTAGCGCGACCCAAGCCGAGTGCAACCAGT
ACGTGCTTGTGCAGGGCTCGCCGCAGGTGGCCAAGCTCGTGCCGTTCCAG
TTCACCGCACTCCCAACTGGGTTCACGTACATCTCATCTCTGCAAGTCAA
GGCCAGCGCCGCGTACTGCCTCTACACGAACGTCAAGCTCAACACCAACT
ACTTCACCGCCAAGACCAGCAAGGGCGTGTATTACGACCTGAGTGGCCTC
ACCATCTGCGGCGTGCGCGGGACATCGCAGCCCACCGCGGGCCCCACGGC
TCAGCCATCTGCCGCAGCAGACCTCACGCCTCCGCCGACCACCGCGCAGC
CAACTTCAACTCCCACTTCAACGCCAACGTCTCAGCCGACCGCAAACCCG
ACCAGCAACCCGACCGGCAACCCAACTGCCAAGCCCTCGGCATCGCCCAC
TGCGAACCCCACTGCAAACCCCACCGCAAAGCCAACGGCTGCGCCAACTG
GACAGCCCACTGCCAAGCCCACCGCAGAGCCCACTGCAGCTCCCACCGCA
GTGCCCACCGCCAAGCCCACCGCCGAGCCAACAGCCGCACCCACCGCCAA
GCCGACTGCTGAACCGACAGCAGAGCCTACCGCGAAGCCCACTGCTGAAC
CCACTGCTGAGCCCACTGCCAAGCCCACTGCAGAGCCCACCGCTGAACCC
ACCTCTAAGCCAACTGCAGAGCCCACCGCTGAACCCACCTCTAAGCCAAC
TGCGGAGCCCACCGCTGAACCCACCTCTAAGCCAACTGCTGAACCCACAG
CCGAGCCCACTGCCAACCCCACCGCTGAGCCTACGGCGGAGCCCACTTCC
AAGCCAACTGCAGAGCCCACCGCCAAGCCAACTGCGGAGCCCACCGCTGA
GCCTACTGCCAAGCCAACTGCCGAACCGACTGCAGAGCCCACAGCTGAGC
CCACTGCCGAGCCCACCGCTGAACCTACCTCTAAGCCCACTGCGGAACCG
ACTGCTGAGCCCACCGCCAAGCCGACTGCGGAGCCCACGGCGGAGCCCAC
AGCCGAGCCCACTGCCAAGCCCACTGCTGAGCCGACCGCGGAGCCAACCG
CTGAACCGACTGCCGAGCCCACTGCCAAGCCGACAGCCGAGCCGACTGCT
GAGCCTACGGCAGAGCCCACCGCCAAGCCGACCGCAGAGCCAACTGCCGA
GCCCACCGCAGAGCCCACTGCCAAGCCGACTGCAGAGCCCACCGCTGAGC
CAACTGCCAAGCCCACTGCCGAACCAACTGCAGAGCCCACCGCCAATCCG
ACCGCTGAGCCCACGGCTGAGCCTACTGCCAAGCCCACTGCGGAACCGAC
TGCAGAGCCCACTGCCAAGCCGACCGCCGAACCGACTGCAGAGCCCACTG
CCAAGCCGACCGCTGAGCCAACTGCTGAGCCTACTTCTAACCCTACCAGC
AAGCCTACAGCGGAGCCCACTTCAAGCCCTACGGCCAACCCTACCAGCAA
GCCCACAGCAGAGCCCACTTCAAGCCCTACGGCCAAGCCTACGGCAGAGC
CCACTTCAAACCCTACGGCCAAACCCACTACTGCAAGCCCTACCGCCAAC
CCCACCGCTACGCCGACCACCGCGCAGCCGACAGCAACGCCTACTGCCAA
CCCCACGAGCACCCCTACCGCCAACCCTACCAGCACCCCCACTGCCAACC
CCACCAGCACCCCCACTGCCAACCCCACAAGCACCCCTACCGCCAACCCT
ACAAGCAAGCCTACCGCCAATCCCACGAGCACGCCAACAGCCAATCCCAC
CGCCACCCCCATTGCGGGGCCAACGCCGACTCCAACCACTGCAAAGCCCA
CGGCAACACCCACCGCCAACTGCACCAACCTCGCCAGCAAGACTTGCAAC
ACCGTTGTCGGCACCACCCCTACCACGGGCACCTGCTACACGACCGCCAC
CGCACCGAACGGCACAGTCGGCGGCCCCAGCGCGGACTGCGGAGACGTGT
CATGCGGGTTCGCGTGCTACATCAGCAGCTTCTCGAACGGGCTCTGCACA
GGTGCACCGAACGGCAGCTGCGCAAGTGGCCAGTGCGGCTGCTACGCCAC
CGTCTCCGGAGCCAACTGCGGCTTCACCAACTTCCAGAACCCCAAGCCCA
GTGGGAACATTGGCAATGGTGGCGGCTGCGCGGAGAACAACTGCAACTCG
TTCGTCAAGCAGGGCACGGGCAACAGCGCGGCCTGCTGCCCATCCAACTG
CCCCGCCCGCCGCCTTGCTGACATTCTCATGGGGGAGGCTCAGGCCGAAA
CTGAAAGCCAGTTCTAG
back to top