Trimin1|348661|estExt_Genemark1.C_Ctg_290115 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348661
Unique NameTrimin1|348661|estExt_Genemark1.C_Ctg_290115
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length789
Homology
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A836CFL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL7_9STRA)

HSP 1 Score: 307 bits (786), Expect = 4.980e-89
Identity = 788/788 (100.00%), Postives = 788/788 (100.00%), Query Frame = 0
Query:    1 MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASXXXXXXXXXXXXXXXXXXXANXTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTAKXXXXXXXNCTNLASKTCNTXXXXXXXXXXXXXTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF 788
            MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASXXXXXXXXXXXXXXXXXXXANXTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTAKXXXXXXXNCTNLASKTCNTXXXXXXXXXXXXXTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF
Sbjct:    1 MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTASXXXXXXXXXXXXXXXXXXXANXTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTAKXXXXXXXNCTNLASKTCNTXXXXXXXXXXXXXTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF 788          
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A835Z0I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.930e-50
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 0
Query:    3 CTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQFTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGLTICGVRGTSQPTA 113
            C    +GCDFSPPSSFKPSAGSSATQAECNQY +VQGSPQVAKLVPF+FTALPTGFT ISSLQVKA AAYCL T+VKLNTNYFTAK++KG YYDLSGLTICGVRGT+QP+A
Sbjct:   20 CPAGTSGCDFSPPSSFKPSAGSSATQAECNQYSIVQGSPQVAKLVPFRFTALPTGFTSISSLQVKAGAAYCLCTSVKLNTNYFTAKSNKGTYYDLSGLTICGVRGTAQPSA 130          
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A835YP20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP20_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.050e-17
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 0
Query:  676 PSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXX-CYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNSFVKQGTGNSAACCPSNCPARRLADILM 777
            P   CGD +CG+ CYISSF+ GLC+              C+ T +GA+C   NF +PKP     NGGGC EN CN+ VKQ TG +A+CCP NC  R L DIL+
Sbjct:  956 PDTGCGDPACGYLCYISSFTPGLCSGAPNNCSGANGVCGCFPTFNGASCKADNFPDPKPVPLPTNGGGCQENQCNATVKQATGGAASCCPYNCARRTLRDILL 1058          
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Match: A0A835YQU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.730e-9
Identity = 52/152 (34.21%), Postives = 61/152 (40.13%), Query Frame = 0
Query:  665 TATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCTXXXXXXXXXXXXXCYATVSGANCGFTNFQNPKPSGNIGNGGGCA---------------------------------------ENNCNSFVKQGTGNSAACCPSNCPARRLADILM 777
            T   PN T   P   CGD +C F CYISSF+ GLC+             C   ++       NF NPKP     NG GC                                        EN CN+ VKQ TG SA+CCP NCPAR+L DI+ 
Sbjct: 1049 TTKPPNLTPATPVTGCGDAACNFKCYISSFTPGLCSGTPNN--------CVGGMA------DNFPNPKPVPLPSNGAGCQALLPGAARDACAERAPAREGRARGASEATSNPGGARRSLENQCNATVKQATGGSASCCPYNCPARKLRDIVF 1186          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348661 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CFL7_9STRA4.980e-89100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0I3_9STRA1.930e-5084.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YP20_9STRA3.050e-1748.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQU2_9STRA1.730e-934.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006970PT repeatPFAMPF04886PTcoord: 166..200
e-value: 2.2E-7
score: 30.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..456
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..306
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..618
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..635
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..192
NoneNo IPR availablePANTHERPTHR44826:SF3PE REPEAT FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G13630)coord: 110..298
NoneNo IPR availablePANTHERPTHR44826:SF3PE REPEAT FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G13630)coord: 510..639
NoneNo IPR availablePANTHERPTHR44826:SF3PE REPEAT FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G13630)coord: 254..418
NoneNo IPR availablePANTHERPTHR44826FAMILY NOT NAMEDcoord: 110..298
NoneNo IPR availablePANTHERPTHR44826:SF3PE REPEAT FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G13630)coord: 375..555
NoneNo IPR availablePANTHERPTHR44826FAMILY NOT NAMEDcoord: 375..555
NoneNo IPR availablePANTHERPTHR44826FAMILY NOT NAMEDcoord: 254..418
coord: 510..639

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:966976..975716 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348661mRNA_9614Tribonema minus UTEX_B_3156 mRNAContig_29 966441..975716 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348661|estExt_Genemark1.C_Ctg_290115 ID=Trimin1|348661|estExt_Genemark1.C_Ctg_290115|Name=jgi.p|Trimin1|348661|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=789bp
MLCTVTVTGCDFSPPSSFKPSAGSSATQAECNQYVLVQGSPQVAKLVPFQ
FTALPTGFTYISSLQVKASAAYCLYTNVKLNTNYFTAKTSKGVYYDLSGL
TICGVRGTSQPTAGPTAQPSAAADLTPPPTTAQPTSTPTSTPTSQPTANP
TSNPTGNPTAKPSASPTANPTANPTAKPTAAPTGQPTAKPTAEPTAAPTA
VPTAKPTAEPTAAPTAKPTAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEP
TSKPTAEPTAEPTSKPTAEPTAEPTSKPTAEPTAEPTANPTAEPTAEPTS
KPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTAEPTAEPTAEPTSKPTAEP
TAEPTAKPTAEPTAEPTAEPTAKPTAEPTAEPTAEPTAEPTAKPTAEPTA
EPTAEPTAKPTAEPTAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTANP
TAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTAKPTAEPTAEPTSNPTS
KPTAEPTSSPTANPTSKPTAEPTSSPTAKPTAEPTSNPTAKPTTASPTAN
PTATPTTAQPTATPTANPTSTPTANPTSTPTANPTSTPTANPTSTPTANP
TSKPTANPTSTPTANPTATPIAGPTPTPTTAKPTATPTANCTNLASKTCN
TVVGTTPTTGTCYTTATAPNGTVGGPSADCGDVSCGFACYISSFSNGLCT
GAPNGSCASGQCGCYATVSGANCGFTNFQNPKPSGNIGNGGGCAENNCNS
FVKQGTGNSAACCPSNCPARRLADILMGEAQAETESQF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006970PT