mRNA_9609 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133391
Unique NamemRNA_9609
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.160e-68
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR
Sbjct:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 98
[Close]
BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A835Z401_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z401_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.740e-46
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            GKRGAPQAFPRRLYE+LQEED S+VSW+K GEGF +N+M  F N TLV YF+HN YTSFQRQCNLYGF+K+TRGPD GMY HEHFK GR EDL  +RR
Sbjct:   58 GKRGAPQAFPRRLYEILQEEDPSIVSWVKGGEGFKVNNMHLFANKTLVNYFRHNNYTSFQRQCNLYGFKKLTRGPDTGMYYHEHFKAGRYEDLNNIRR 155
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.200e-35
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            G+RGAPQ FPR+LYE+L  E + V+ W  +G+ FII +M+ FVN  L+ YF+H KY+SFQRQ NLYGFRKI +GPD G Y HEHF + + E L  VRR
Sbjct:   99 GRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.470e-34
Identity = 59/98 (60.20%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            G+RGAPQ FPR+LYE+L  E + ++SW +NG  F+I +MD FVN  L+KYF+H KY+SFQRQ NLYGFRKI +GPD G Y HE F +     LVKVRR
Sbjct:   77 GRRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKIQKGPDTGAYAHEGFLRDDESQLVKVRR 174
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.100e-34
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            G+RGAPQ FPR+LYE+L  E   ++ W  +G+ FII +M+TFV   L+KYF+H KY+SFQRQ NLYGFRK+ +G D G Y HE F + + E L KVRR
Sbjct:    7 GRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.780e-34
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            GKRGAPQ FPR+L+ELL++ED++V+ W + GE F+I DMDTF   +L +YF+H+K+TSFQRQ NLYGFRKI +G   G Y+H HF++   E L KVRR
Sbjct:   52 GKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRR 149
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7S2GMP7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMP7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.490e-34
Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            GKRGAPQAFPR+L+E+L  E   ++ W ++G  FII DM+TFV + L+KYF+H KY+SFQRQ NLYGFRK+  GPDAG Y H+ F K R E L KVRR
Sbjct:    1 GKRGAPQAFPRKLFEILSNEPIDIICWTESGLSFIITDMETFVTSILMKYFRHQKYSSFQRQLNLYGFRKVNMGPDAGAYAHDCFLKNRGELLGKVRR 98
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BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.280e-32
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            GKRGAPQ FPR+LYE+L  E    +SW ++G  F+I DM+TFV + L+KYF+H K++SFQRQ NLYGFRKI++G + G Y HE F + + + L  VRR
Sbjct:   69 GKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRR 166
[Close]
BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.380e-31
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            GKRGAPQ F R+LYE+L  E    +SW  +G  F+I +MD FV   L+KYF+H KY+SFQRQ NLYGFRKI++G DAG Y HE F +G+ E L  VRR
Sbjct:  161 GKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRR 258
[Close]
BLAST of jgi.p|Trimin1|133391 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 121 bits (304), Expect = 7.350e-31
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 294
            G+RGAPQAF R+LYE+L+ E   ++SW   G  F + D+D F    L+KYF+H+K+ SFQRQ NLYGFRKITRG DAG Y H++F+KG+ + L  VRR
Sbjct:    7 GQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRR 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133391 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6Z9_9STRA5.160e-68100.00HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A835Z401_9STRA1.740e-4675.51HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2G7U9_9STRA2.200e-3558.16Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2CXJ7_9STRA1.470e-3460.20Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2BSE7_9STRA2.100e-3456.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9YBQ9_9STRA2.780e-3459.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2GMP7_9STRA3.490e-3461.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2R5C8_9STRA5.280e-3255.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WU52_9STRA5.380e-3158.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1QFS1_HETAK7.350e-3156.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:930013..930430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133391|gw1.29.23.1
Descriptionheat shock factor
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XG5V@2836|Bacillariophyta
Evalue2.62e-27
Seed ortholog35128.Thaps263978
Hectar predicted targeting categoryother localisation
TranscriptId133713
TrackFilteredModels1
ProteinId133391
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133391gene_9609Tribonema minus UTEX_B_3156 geneContig_29 930013..930430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9609_1exon_9609_1Tribonema minus UTEX_B_3156 exonContig_29 930013..930169 +
exon_9609_2exon_9609_2Tribonema minus UTEX_B_3156 exonContig_29 930294..930430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9609CDS_9609Tribonema minus UTEX_B_3156 CDSContig_29 930013..930169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133391Trimin1|133391|gw1.29.23.1Tribonema minus UTEX_B_3156 polypeptideContig_29 930013..930430 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9609 ID=mRNA_9609|Name=jgi.p|Trimin1|133391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_29:930013..930430+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAAACGAGGGGCGCCTCAAGCTTTCCCCAGGCGGCTATACGAGCTGCT
ACAAGAGGAGGATGCGAGTGTAGTGTCATGGATCAAGAATGGAGAGGGCT
TCATCATCAACGACATGGACACATTCGTCAACACGACGTTGGTGAAATAC
TTTCAACACAACAAGTACACGAGCTTCCAGCGGCAGTGCAACTTGTACGG
CTTCAGGAAGATCACCAGGGGCCCTGATGCAGGCATGTACATACACGAGC
ACTTCAAGAAGGGCAGACTTGAAGATCTGGTCAAGGTGCGTCGA
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protein sequence of jgi.p|Trimin1|133391

>Trimin1|133391|gw1.29.23.1 ID=Trimin1|133391|gw1.29.23.1|Name=jgi.p|Trimin1|133391|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKY
FQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR
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mRNA from alignment at Contig_29:930013..930430+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9609 ID=mRNA_9609|Name=jgi.p|Trimin1|133391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=418bp|location=Sequence derived from alignment at Contig_29:930013..930430+ (Tribonema minus UTEX_B_3156 )
GGCAAACGAGGGGCGCCTCAAGCTTTCCCCAGGCGGCTATACGAGCTGCT
ACAAGAGGAGGATGCGAGTGTAGTGTCATGGATCAAGAATGGAGAGGGCT
TCATCATCAACGACATGGACACATTCGTCAACACGACGTTGGTGAAATAC
TTTCAACGTAAGCGACTGCACGCATAGCTGATGCTTGGCAGATGATCATG
TGTTCCGCGTTGCCTATTCAACTGGCGGTCACTCAAGTCGCATGTCTTGA
CGAGTATGTGTTTGCCGTCGCCAACCCGCAGACAACAAGTACACGAGCTT
CCAGCGGCAGTGCAACTTGTACGGCTTCAGGAAGATCACCAGGGGCCCTG
ATGCAGGCATGTACATACACGAGCACTTCAAGAAGGGCAGACTTGAAGAT
CTGGTCAAGGTGCGTCGA
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Coding sequence (CDS) from alignment at Contig_29:930013..930430+

>mRNA_9609 ID=mRNA_9609|Name=jgi.p|Trimin1|133391|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_29:930013..930430+ (Tribonema minus UTEX_B_3156 )
GGCAAACGAGGGGCGCCTCAAGCTTTCCCCAGGCGGCTATACGAGCTGCT
ACAAGAGGAGGATGCGAGTGTAGTGTCATGGATCAAGAATGGAGAGGGCT
TCATCATCAACGACATGGACACATTCGTCAACACGACGTTGGTGAAATAC
TTTCAACACAACAAGTACACGAGCTTCCAGCGGCAGTGCAACTTGTACGG
CTTCAGGAAGATCACCAGGGGCCCTGATGCAGGCATGTACATACACGAGC
ACTTCAAGAAGGGCAGACTTGAAGATCTGGTCAAGGTGCGTCGA
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