mRNA_9591 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144515
Unique NamemRNA_9591
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A835YXT1_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT1_9STRA)

HSP 1 Score: 507 bits (1305), Expect = 1.360e-181
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1
Query:    1 TCTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            TCTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR
Sbjct:    1 TCTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 252          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A818LZ82_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818LZ82_9BILA)

HSP 1 Score: 177 bits (450), Expect = 4.250e-50
Identity = 100/251 (39.84%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C  W VVTTIF P+ A +   +    W ++V+ADK    +  Y +   +Y+SVE Q+ L      +  +PWNHFG KN+GYL A L GA+ ++D DDDNVL  +  + P + +  + S               FN YP+MGA++ P WPRGFPL+ IK E      C  +    E +   +V + Q+LA +DPDVDAIYR+T PLPL+F       + +      PYNAQA++H++   + +LLP+TVHGR
Sbjct:   39 CDSWVVVTTIFPPSEAVQKAARLD-GWCVVVVADKKS--SPSYYVSNIVYLSVEAQKKLVNHYKFVQLIPWNHFGRKNIGYLYAILQGAQYIFDLDDDNVLKQSHISPPKSVIEMTVSNCT-----------VFNVYPTMGASKHPSWPRGFPLEKIKQE------CYWTQERREVH-KDEVVIFQSLADNDPDVDAIYRMTLPLPLHFKSHTS--VGIPPGVFVPYNAQASMHYRKSFWGLLLPITVHGR 266          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A0G4IGI5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IGI5_PLABS)

HSP 1 Score: 177 bits (450), Expect = 2.610e-49
Identity = 109/260 (41.92%), Postives = 149/260 (57.31%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERG---IYVSVEVQQSLAKASP-LIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIE-ANVTSK-VAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKI---LLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C +W+VVTTIF P+ A K     GP+W ++++ D+  P    Y +E     +Y+    Q++  K  P   + L WNHFG KNVG+L A  HGA+ +WDFDDDN+L   K    +      E   +   +    P   +NPY  MGA  SP WPRG PL  IK         G   +S++ A V  + VA++Q+LA HDPD+DAIYRLT PLP  FNF+P      +++  +TL+P NAQA L  +A  + +LLPVTVHGR
Sbjct:  117 CKQWSVVTTIFEPSDAVKKQANLGPDWCIVIVGDRKSPPV--YHVEGSSTIVYLDANDQETFGKEFPEFFSTLNWNHFGRKNVGFLYAIAHGAQAIWDFDDDNIL---KDHADIKVPGEDEDYSVDLPKDHDFP--TYNPYVKMGAPHSPSWPRGIPLTHIKDS-------GSWKSSLQRARVKGRDVALIQSLADHDPDMDAIYRLTMPLP--FNFQPPSDAAPIVLPPKTLAPLNAQACLFRRAAFWMLLLPVTVHGR 360          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A812JXG3_SYMPI (STL1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812JXG3_SYMPI)

HSP 1 Score: 170 bits (431), Expect = 3.820e-48
Identity = 106/262 (40.46%), Postives = 148/262 (56.49%), Query Frame = 1
Query:    7 TRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERG-----IYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGII-----PAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEP--EKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            TRWAV+TTI  PT A + + +    W + VI+D  GP  A Y L R       +++  +Q+ LA  S  ++++PWNHFG KN+GYL+A   GA+V+WDFDDDN++ A        +    +SGI+     P      G G   N Y ++G    PCWPRGFPL   +S A +      S  S  +  + +VAVLQ+LA  DPDVDAI+RLT P      F+P  +++L +   T  P NAQA LH +   + +LLP+TV GR
Sbjct:   33 TRWAVLTTINGPTPAVQQLAE-ADGWCIAVISDLKGP--ARYDLPRASSHGLFFLNASLQKKLAADSTFVSSIPWNHFGRKNLGYLVAIARGAQVIWDFDDDNLVTAGDFPD---FPRGLDSGILQVLWTPGPGAHLGSGGVLNIYSALGCPVWPCWPRGFPLSLARSRAPNRSEWLQS--SELSKPSKRVAVLQSLADKDPDVDAIFRLTSPSATEIYFQPPGKEVLALPAFTFCPANAQAALHRRDAFWGLLLPMTVSGR 286          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.400e-47
Identity = 116/268 (43.28%), Postives = 151/268 (56.34%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARK--CRGPGA-AFNPYPSMGATESPCWPRGFPLQDIK---SEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQP---LPLYFNFE-----PE---KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C RWAV+T+IF PT   + +     +W ++V+ D+ GP  AEY +E  IY++ + Q+ L     ++  LPWNHFG KN+GYL A  HGA V++D DDDN L       P A V ++ S + PA+      GP A   NPY   G   +  WPRGFPL  I    S    E+A   +  S       ++ V+QALA HDPDVDA+YRLT P   LP  F+FE     PE    + +V     +PYNAQATLHF    + MLLPVTVHGR
Sbjct:   28 CERWAVLTSIFEPTDTVRQLGA-AEDWCVVVVGDQNGP--AEYNVEGVIYLTPQDQEQLPYR--IVPLLPWNHFGRKNIGYLYAVHHGATVIYDVDDDNAL-----IHPEAGVPHALSPVTPASTTSFAVGPEAFVHNPYGCFGGPGN-VWPRGFPLDSINDADSNRCDEVAVDSAGESAAPEEGWRLGVVQALANHDPDVDAVYRLTYPPGGLP--FDFEVPDPVPEGMSSLKIVPPAAFTPYNAQATLHFPPAFWGMLLPVTVHGR 282          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A8B7XWL1_ACAPL (probable glycosyltransferase STELLO2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XWL1_ACAPL)

HSP 1 Score: 170 bits (431), Expect = 7.660e-47
Identity = 109/251 (43.43%), Postives = 137/251 (54.58%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C RW VVTTI+ PT     +      W ++V+ADK GP +   P     Y+ V  Q+S      L   +PWNHFG KN+GYL A  HGA++++D DDDN         PL   + +    +  AR     GA +NPYP+ G      WPRGFPL  IK ++    A    A      +  +V V+Q LA HDPDVDAIYRLT  LP  FN  P + L+V +R  SPYNAQATLH     + MLLPVTVH R
Sbjct:   96 CDRWIVVTTIYKPTPILPKISSL-KGWCMVVVADKKGPQSMNIP--NVDYLDVVQQESCGYK--LCRVVPWNHFGRKNIGYLYAIEHGAKLIYDTDDDNA--------PLFPEVPAFDN-VGYARYVTAGGAVWNPYPTFGQNTK-VWPRGFPLSRIKDQSTKIAAESGKA------LPQQVGVVQFLAQHDPDVDAIYRLTSELPFDFNPTPRR-LVVPKRMFSPYNAQATLHAHDAFWGMLLPVTVHSR 324          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: W7TUS0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUS0_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.570e-44
Identity = 100/261 (38.31%), Postives = 152/261 (58.24%), Query Frame = 1
Query:    1 TCTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKC--RGPGAAFNPYPSMGATE----SPC--WPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPE-KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            TC +WAVVTTIF PTA  K + +   +W ++V+ D+  P   +   +  I++  E Q++L     +I  L WNHFG KN+G+L A  HGAEV++D DDDN+L       P   + + + G +  ++     G    +NPYP+ G+      SP   WPRGFP+  I   +   ++ G    ++E  V   + ++Q+LA HDPDVDA+YRLT  LPL F+     ++ ++    ++P+NAQAT+  KAG + MLLP+TV+GR
Sbjct:  105 TCNKWAVVTTIFGPTALVKQLVEM-KDWCVVVVGDQQSPSTYDIQSDNLIFLGPEEQEALPYH--IIPLLKWNHFGRKNIGFLYAMQHGAEVIYDTDDDNILKVDSRGKPF--IPDCKLGELALSKDVVRSGQSQVYNPYPNFGSVRVKDGSPAFVWPRGFPVDLITDASTWNVSLGVEEETLEGGV---ITIVQSLADHDPDVDALYRLTSHLPLRFHSGGSARLEVIPPGVMTPFNAQATVFGKAGFWGMLLPITVNGR 357          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A6H5JQ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ39_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 7.160e-44
Identity = 113/262 (43.13%), Postives = 149/262 (56.87%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAF-NPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAA--SIEANVTSKVAVLQALAGHDPDVDAIYRLTQP---LPLYFN----FEPEKILL-VSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C +WAV+T+IF PT   K + +    W ++V+ DK GP  AEY +    Y++   Q +L     +   LPWNHFG KNVGY+ A  HGA+V++D DDDN L   +   P A V + E  ++  +R    P ++  NPY   GA     WPRG+PL  I+ ++       H AA   ++    S++ V+QALA HDPDVDAIYRLT P   LP  FN      PE  L  V    ++PYNAQATLHF    + MLLPVTVHGR
Sbjct:   81 CEKWAVLTSIFEPTETVKQLAELR-GWCVVVVGDKNGP--AEYHVTGVKYLTPGDQDALPYR--ITEILPWNHFGRKNVGYMYAIQHGAKVIYDVDDDNALIHPEEGVPHAGVSSIEDNVL--SRFSGHPSSSVHNPYGCFGAP-GVSWPRGYPLPAIQDDSP------HHAAYCDVDGISGSRIGVVQALANHDPDVDAIYRLTHPPGGLPFSFNPGAPGTPESTLRGVPADKMTPYNAQATLHFPVAFWGMLLPVTVHGR 328          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A1S3JBQ2_LINUN (probable glycosyltransferase STELLO2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JBQ2_LINUN)

HSP 1 Score: 162 bits (411), Expect = 7.410e-44
Identity = 103/257 (40.08%), Postives = 140/257 (54.47%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAAS------ELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C +W V+TTIF P+   K + +   +W ++V+ADK GP+  +Y +    Y+SV  Q+S      +   L WNHFG KN+GY+ A  HGAE ++D DDDNVL  AK   P           I   +     G  +NPYP M       WPRGFPL+ IKS+ A       EL  G            K+ ++Q+LA ++PDVDAIYR TQPLP  F+ + E  + V +  ++PYNAQAT+      F+  LPVTV GR
Sbjct:  102 CKKWVVITTIFEPSELVKQLSEI-TSWCVVVVADKKGPE--KYVVPNVKYLSVLEQESCQ--FHICKLLIWNHFGRKNIGYMYAIHHGAEYIYDTDDDNVLRRAKIPDPAK---------IKGVKNINMKGTVWNPYPMMSKYPD-SWPRGFPLEKIKSKEAKTQSFTDELPLG------------KIGIIQSLADNEPDVDAIYRFTQPLPFDFHHK-ELYVAVPQGVMTPYNAQATMTMYDAFFSTYLPVTVKGR 330          
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Match: A0A0H5RCI1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RCI1_9EUKA)

HSP 1 Score: 166 bits (420), Expect = 2.550e-43
Identity = 102/258 (39.53%), Postives = 142/258 (55.04%), Query Frame = 1
Query:    4 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERG---IYVSVEVQQSLAKASP-LIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPG-AAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVT-SKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEK-ILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVHGR 756
            C  W+VVTTIF P+ + +     GP+W ++V+ D+  P    YPL      +Y+ V  Q+S A   P  I AL WNHFG KNVG+L A   GA+ +WDFDDDN+L           ++N +  +I         G   +NPY   GA   P WPRG PL  IK   +      ++A    + V  + + ++Q+LA HDPD+DAIYRL QPLP  F       I+++   TL+P NAQA L  ++  + +LLP+TVHGR
Sbjct:  125 CKYWSVVTTIFDPSDSVRRQANLGPDWCIVVVGDRKSPPV--YPLTGSSQLVYLDVPAQESYALRFPEFINALSWNHFGRKNVGFLYAIEQGAKSIWDFDDDNLLKDGID------IINPDDEVIVEVDVPEQDGFPTYNPYIHFGAPHFPSWPRGIPLTHIKEPGS------YNATMTRSKVRGADIGLIQSLADHDPDMDAIYRLVQPLPFTFQTSSSAPIVVLPPNTLAPLNAQACLFKRSAFWMLLLPITVHGR 368          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144515 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXT1_9STRA1.360e-181100.00Uncharacterized protein (Fragment) n=3 Tax=Tribone... [more]
A0A818LZ82_9BILA4.250e-5039.84Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A0G4IGI5_PLABS2.610e-4941.92Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A812JXG3_SYMPI3.820e-4840.46STL1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
D7FLI5_ECTSI3.400e-4743.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8B7XWL1_ACAPL7.660e-4743.43probable glycosyltransferase STELLO2 n=1 Tax=Acant... [more]
W7TUS0_9STRA4.570e-4438.31Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A6H5JQ39_9PHAE7.160e-4443.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S3JBQ2_LINUN7.410e-4440.08probable glycosyltransferase STELLO2 n=1 Tax=Lingu... [more]
A0A0H5RCI1_9EUKA2.550e-4339.53Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:595345..599077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144515|gw1.29.70.1
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Descriptionplant-type cell wall cellulose biosynthetic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Evalue5.58e-48
Seed ortholog2880.D7FLI5
Hectar predicted targeting categorysignal peptide
TranscriptId144837
TrackFilteredModels1
ProteinId144515
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144515gene_9591Tribonema minus UTEX_B_3156 geneContig_29 595345..599077 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9591_1exon_9591_1Tribonema minus UTEX_B_3156 exonContig_29 595345..595872 +
exon_9591_2exon_9591_2Tribonema minus UTEX_B_3156 exonContig_29 598850..599077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9591CDS_9591Tribonema minus UTEX_B_3156 CDSContig_29 595345..595872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144515Trimin1|144515|gw1.29.70.1Tribonema minus UTEX_B_3156 polypeptideContig_29 595345..599077 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9591 ID=mRNA_9591|Name=jgi.p|Trimin1|144515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_29:595345..599077+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACATGCACCCGCTGGGCAGTTGTCACCACAATATTTGCGCCCACTGCTGC
CACCAAGGCAGTTGATCAATGGGGGCCCAACTGGTATCTGCTAGTCATCG
CTGATAAAGCGGGCCCTGATGCGGCAGAGTACCCGCTTGAGCGCGGCATA
TACGTGTCCGTTGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTCTTAT
TGCGGCGCTCCCATGGAACCACTTTGGGATCAAGAATGTGGGCTACCTAA
TTGCTGCGTTGCATGGAGCGGAAGTCGTGTGGGATTTCGATGACGACAAC
GTCCTCAATGCGGCAAAGGCAGCTGGCCCTCTGGCGTGGGTGCTGAATAG
CGAGAGCGGTATCATCCCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGG
CTTTTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCT
CGCGGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGC
ATGTGGGCACAGTGCGGCAAGCATTGAGGCGAATGTCACAAGTAAGGTGG
CTGTGCTGCAGGCGCTGGCTGGACATGATCCGGATGTGGACGCTATCTAT
CGCCTCACCCAGCCTCTGCCGCTATACTTCAACTTTGAGCCGGAGAAGAT
CTTGCTGGTCTCGCGGCGCACCCTTTCCCCATACAACGCTCAAGCCACAC
TGCACTTCAAGGCAGGGCTATTCGCGATGCTTCTCCCAGTAACCGTCCAT
GGCAGG
back to top

protein sequence of jgi.p|Trimin1|144515

>Trimin1|144515|gw1.29.70.1 ID=Trimin1|144515|gw1.29.70.1|Name=jgi.p|Trimin1|144515|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
TCTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGI
YVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDN
VLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWP
RGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIY
RLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTVH
GR
back to top

mRNA from alignment at Contig_29:595345..599077+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9591 ID=mRNA_9591|Name=jgi.p|Trimin1|144515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3733bp|location=Sequence derived from alignment at Contig_29:595345..599077+ (Tribonema minus UTEX_B_3156 )
ACATGCACCCGCTGGGCAGTTGTCACCACAATATTTGCGCCCACTGCTGC CACCAAGGCAGTTGATCAATGGGGGCCCAACTGGTATCTGCTAGTCATCG CTGATAAAGCGGGCCCTGATGCGGCAGAGTACCCGCTTGAGCGCGGCATA TACGTGTCCGTTGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTCTTAT TGCGGCGCTCCCATGGAACCACTTTGGGATCAAGAATGTGGGCTACCTAA TTGCTGCGTTGCATGGAGCGGAAGTCGTGTGGGATTTCGATGACGACAAC GTCCTCAATGCGGCAAAGGCAGCTGGCCCTCTGGCGTGGGTGCTGAATAG CGAGAGCGGTATCATCCCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGG CTTTTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCT CGCGGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGC ATGTGGGCACAGTGCGGCAAGCATTGAGGTGAGGCCAATGTGATGGATAA TTTAGCCACACTCCTCCTTGCCGTTGCATGAGTGTTGGTTCAAGTGGTGA GATGATGTTGTGACCACTGCATGTTCCAGGGCATCTTTTTAGTAGAGTGT GTTTCTAATAGCTTAGGTGATTGACATGGAGAACATGATAAAGATAGCAG CGCGTGTATCGATACTCATACGCACTGACTCACAATGTCATGCGAAAATG TGCAGAGCACTGCCAGGAGCCTGACATAAGATCTGGTTTAGATGCACTCA ATGGCTAGAGTTGTTTGATCACACCAATGCAACCTTTTGCAGCAAAACCT CTTTGGTATCATGGATACGTGTTTGTAATAGCTATAGCGAGCAAGCTTGT TCAACACCTTGTTGCAGTAGGCCCCAGCGGCACCGTGGTACGGCCAGCAC CGAAACACAATACATGCAGGGTGAACCATTTAGCGCTATGCATAATGATC CCAATGACACACACAAGAATCAAGTTGAACCACACAACATATTATATACC TCAAAAGAACAGGAATATTGAAAGTTGCACGTCCAATGCAGCGTGCAGAG CACAACTCTGGACACACTGCAGACGCAGGCAGTTGGCCAGGTTCATGCAG GGACAGCGACTGTCTACCACAACCAGTCTTTTTGACGTCATGATTGTTGC GCCGTGCATGTGTCACTCTGTCCCCGGACAGGCCCTCATGACGATTGAGG AAGGGCATAAACTTGGCCATCTACCCATATTACAAGTAATGGTAACCTCT GCACCCAATGGCATCACGAATAGACTTCTTTTGCCTGGATTATTACTGCT GCTGTGCTCTCTCAATGCTCACACCACCCACACATTCAATTTGTCACGTA AACGTTTAATGATGTGGTGATTTGGCCAAGTTCAAGCTGGGAGGGCAGCA CAGTCATCGCAACTGACAAGTATCCTGGCCGTGATGCTGTGAGAGGAAGC AGATTATCTCTTGCATGAGGCAATTGCCAACATGTGCGCACTTGATCTCC GCTTCTACGCTGTCTGCCCATAATTTGGTAGTACCCCCTGCCTGGACCTT TGAGTATGGTAGCAGCGCCGCTGCATCCTCTCCTCTGCTGAACAGTAGAA GGAGTGCGGCACATCCAACCCCTGCACAACTCCAGCCGCTCCTGCTGCTT GCTGCAGCACAGCGGCGCTGCTGCAGCCATCACTGCTGGTGCAGCAGCTG CAGCTGCTACTGCCGCTGCTGCCCCCTCGGCAGCAGCGAACTTTGAACGG CGAAGTGGACGAATTTTCTGTAAGCAGCGACACAGTGGAGGATGAGCAAG AGGTATACATGTAGTACATCAAGTGCAAGTTTTGCGACAAGCACTTGTCT GCAAGCAACCCCGCACGCACAACTGCTGAGCACATCCACAGCAGTGAATA TAACCTGAAGCTGCGACGGGTGTGGAGTCGGGCGGCACTAAGCGCTGCAA GGTGGGCGTCACTTAGCATCAGTTGCAGGCATCTGTGCCTCTGATGTCAT GTGCAATGGCAGAGTTACTCAAGGGCAGTATTTTTTTTTGGCAACCCGAG TTTTGAGTACTACTAGCCTGAGGGCACCCCGGTATCATGCCTGTCGTGCA CGAGGCCCTTAATCCCTTGGGGGCAGTTCGGGGGTCAACCAGTTGCCAAG TAACTTCATGTTAATGAAACTTCTCAAGAACGGATATGACACAAGTCTGG GAAATGGGCATACTTTAATTTCAGGTTGATGTTGGACTAGGCTTAGCGTA CATACATCATTTTACGATGATTTCGGCACATACGATATACGGGTGAAGGT ACAGGTTCACGATTATGGTTGATACAGCGAGAACGGTTGTGCAATCACAG GTACAGCTACCATCACAGAAACCGTATGGTATGTGTACAGCCTAAGGATT TTATTTTGAACAACCTGCAATTCGGTAACCCTATTGGTAGCTACTATTAT ATCTCATTTTCAGCCCCTTGTCACCTGCTTGCTGCTGCTGCGGCATTGCA GCTGCAGTGCACGTTTGACACCGCTGCTGCTGCTGCTGCTGCTGCATCTG CTGCGTGGTCCCACTGCTACAGCTGCTGCTGCAGTTGCTGCCTGTGCCAT GGCACCAGCATCACCTACTGAAGGCGCTGTTATTCCCGCATAAACTCTAC ATTATGCAGTCATCCTTTTTCTGCTAACCCCCTTATTTAAAGTACCGTTT CGGTGATAATCAAGCCCACAGAGGCGAGGTGTCTGTGAGTTCCTGCTTTC ACAAATGATTATTGCAGCCCCACCTGTTTTGGTGCTCACAAAATGCCCCT TCCTCTTCCTTTCCAGCCAGCATGCACTGCATTCTCTATTGCAACAACAC ACTGACAGTGTTCGGATCCCACATTCAACACCAACTGCTGGTGTTTGCCG GACATACTGAACTGGCCTTCCAGTGCACTAACTTAACTGCACAGCATACT GCCCCATTTGACTTTCTGCACCTTACACAATGATCAGATGGCCTACAGGC AGCGCCACTACGCTATCGCACACCGTCGTGCCTCCTGCCCCAGTATTTGG AGTGTGTCTAACAACTTCAAGGTTTCCACGAAATTATTGTACATCTCACA CTCAATACCACGCCTGGTAGTGAAGGCTGGCGAGGCATGCCAATCACGCC CTAACATTACTGCCGCACCGCATGTTTTGTGCAAGCTCACAGAAAGGGCA CACCACACCCCTCTTTTGCGCCAACAAATCTGTTTTTCACTTGCCCCATG GGCTTAATCATTGATAGTACAGTACTTGCTTGTTAGGCTTTATGGTGTCA TTGGCAGGCTCATGCCTGCAGACCGTGCCAACCTAGCCAGAGTTACTTTC CTAATAGACTATCTCTGAGTCTCCCTTGATTTCTTGTCCTGGACCATTGC AATCAATCAGCGCGCATCAGCCTGTCGTTCTCTTGTCTTGCTGCATGCTA CACAGGCGAATGTCACAAGTAAGGTGGCTGTGCTGCAGGCGCTGGCTGGA CATGATCCGGATGTGGACGCTATCTATCGCCTCACCCAGCCTCTGCCGCT ATACTTCAACTTTGAGCCGGAGAAGATCTTGCTGGTCTCGCGGCGCACCC TTTCCCCATACAACGCTCAAGCCACACTGCACTTCAAGGCAGGGCTATTC GCGATGCTTCTCCCAGTAACCGTCCATGGCAGG
back to top

Coding sequence (CDS) from alignment at Contig_29:595345..599077+

>mRNA_9591 ID=mRNA_9591|Name=jgi.p|Trimin1|144515|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_29:595345..599077+ (Tribonema minus UTEX_B_3156 )
ACATGCACCCGCTGGGCAGTTGTCACCACAATATTTGCGCCCACTGCTGC
CACCAAGGCAGTTGATCAATGGGGGCCCAACTGGTATCTGCTAGTCATCG
CTGATAAAGCGGGCCCTGATGCGGCAGAGTACCCGCTTGAGCGCGGCATA
TACGTGTCCGTTGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTCTTAT
TGCGGCGCTCCCATGGAACCACTTTGGGATCAAGAATGTGGGCTACCTAA
TTGCTGCGTTGCATGGAGCGGAAGTCGTGTGGGATTTCGATGACGACAAC
GTCCTCAATGCGGCAAAGGCAGCTGGCCCTCTGGCGTGGGTGCTGAATAG
CGAGAGCGGTATCATCCCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGG
CTTTTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCT
CGCGGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGC
ATGTGGGCACAGTGCGGCAAGCATTGAGGCGAATGTCACAAGTAAGGTGG
CTGTGCTGCAGGCGCTGGCTGGACATGATCCGGATGTGGACGCTATCTAT
CGCCTCACCCAGCCTCTGCCGCTATACTTCAACTTTGAGCCGGAGAAGAT
CTTGCTGGTCTCGCGGCGCACCCTTTCCCCATACAACGCTCAAGCCACAC
TGCACTTCAAGGCAGGGCTATTCGCGATGCTTCTCCCAGTAACCGTCCAT
GGCAGG
back to top