mRNA_9579 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130521
Unique NamemRNA_9579
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: A0A835YXT1_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT1_9STRA)

HSP 1 Score: 462 bits (1190), Expect = 3.770e-164
Identity = 232/248 (93.55%), Postives = 236/248 (95.16%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPI-KVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            CTRWAVVTTIFAPTAATKAVDQW P W LLVIADKAGPDAAEYPLE GIYVSVEVQQSLAKASP IAALPWNHFG KNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPL+WVL+SESGI+ AARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIE     KVAVLQALAGHDPDVDAIYRLT+PLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV
Sbjct:    2 CTRWAVVTTIFAPTAATKAVDQWGPNWYLLVIADKAGPDAAEYPLERGIYVSVEVQQSLAKASPLIAALPWNHFGIKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLAWVLNSESGIIPAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEANVTSKVAVLQALAGHDPDVDAIYRLTQPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 249          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: A0A818LZ82_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818LZ82_9BILA)

HSP 1 Score: 187 bits (474), Expect = 9.760e-54
Identity = 102/247 (41.30%), Postives = 144/247 (58.30%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C  W VVTTIF P+ A +   +    WC++V+ADK    +  Y + + +Y+SVE Q+ L     F+  +PWNHFGRKN+GYL A L GA+ ++D DDDNVL  +  + P S +  + S               FN YP+MGA++ P WPRGFPL+ IK E      C  +    EV   +V + Q+LA +DPDVDAIYR+T PLPL+F       + +      PYNAQA++H++   + +LLP+TV
Sbjct:   39 CDSWVVVTTIFPPSEAVQKAARL-DGWCVVVVADKKS--SPSYYVSNIVYLSVEAQKKLVNHYKFVQLIPWNHFGRKNIGYLYAILQGAQYIFDLDDDNVLKQSHISPPKSVIEMTVSNCT-----------VFNVYPTMGASKHPSWPRGFPLEKIKQE------CYWTQERREVHKDEVVIFQSLADNDPDVDAIYRMTLPLPLHFKSHTS--VGIPPGVFVPYNAQASMHYRKSFWGLLLPITV 263          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: A0A0G4IGI5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IGI5_PLABS)

HSP 1 Score: 181 bits (459), Expect = 1.050e-50
Identity = 107/254 (42.13%), Postives = 145/254 (57.09%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHG---IYVSVEVQQSLAKASP-FIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKI---LLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C +W+VVTTIF P+ A K      P WC++++ D+  P    Y +E     +Y+    Q++  K  P F + L WNHFGRKNVG+L A  HGA+ +WDFDDDN+L   K    +    + E   V   +    P   +NPY  MGA  SP WPRG PL  IK   + +     S     V+   VA++Q+LA HDPD+DAIYRLT PLP  FNF+P      +++  +TL+P NAQA L  +A  + +LLPVTV
Sbjct:  117 CKQWSVVTTIFEPSDAVKKQANLGPDWCIVIVGDRKSPPV--YHVEGSSTIVYLDANDQETFGKEFPEFFSTLNWNHFGRKNVGFLYAIAHGAQAIWDFDDDNIL---KDHADIKVPGEDEDYSVDLPKDHDFP--TYNPYVKMGAPHSPSWPRGIPLTHIKDSGSWK----SSLQRARVKGRDVALIQSLADHDPDMDAIYRLTMPLP--FNFQPPSDAAPIVLPPKTLAPLNAQACLFRRAAFWMLLLPVTV 357          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: A0A812JXG3_SYMPI (STL1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812JXG3_SYMPI)

HSP 1 Score: 174 bits (440), Expect = 1.460e-49
Identity = 106/257 (41.25%), Postives = 150/257 (58.37%), Query Frame = 1
Query:    4 TRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPL--EHGIY-VSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGA------AFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEP--EKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            TRWAV+TTI  PT A + + +    WC+ VI+D  GP   + P    HG++ ++  +Q+ LA  S F++++PWNHFGRKN+GYL+A   GA+V+WDFDDDN++ A        +    +SGI+       GPGA        N Y ++G    PCWPRGFPL   +S A +      S+  +     +VAVLQ+LA  DPDVDAI+RLT P      F+P  +++L +   T  P NAQA LH +   + +LLP+TV
Sbjct:   33 TRWAVLTTINGPTPAVQQLAEA-DGWCIAVISDLKGPARYDLPRASSHGLFFLNASLQKKLAADSTFVSSIPWNHFGRKNLGYLVAIARGAQVIWDFDDDNLVTAGDFP---DFPRGLDSGILQVLWT-PGPGAHLGSGGVLNIYSALGCPVWPCWPRGFPLSLARSRAPNRSEWLQSS-ELSKPSKRVAVLQSLADKDPDVDAIFRLTSPSATEIYFQPPGKEVLALPAFTFCPANAQAALHRRDAFWGLLLPMTV 283          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: A0A8B7XWL1_ACAPL (probable glycosyltransferase STELLO2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XWL1_ACAPL)

HSP 1 Score: 176 bits (447), Expect = 2.860e-49
Identity = 110/247 (44.53%), Postives = 139/247 (56.28%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C RW VVTTI+ PT     +      WC++V+ADK GP +   P  +  Y+ V  Q+S          +PWNHFGRKN+GYL A  HGA++++D DDDN         PL   + +    V  AR     GA +NPYP+ G      WPRGFPL  IK ++        +A S +  P +V V+Q LA HDPDVDAIYRLT  LP  FN  P + L+V +R  SPYNAQATLH     + MLLPVTV
Sbjct:   96 CDRWIVVTTIYKPTPILPKISSL-KGWCMVVVADKKGPQSMNIP--NVDYLDVVQQESCGYK--LCRVVPWNHFGRKNIGYLYAIEHGAKLIYDTDDDNA--------PLFPEVPAFDN-VGYARYVTAGGAVWNPYPTFGQNTK-VWPRGFPLSRIKDQSTKI-----AAESGKALPQQVGVVQFLAQHDPDVDAIYRLTSELPFDFNPTPRR-LVVPKRMFSPYNAQATLHAHDAFWGMLLPVTV 321          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: UPI0014582C46 (probable glycosyltransferase STELLO2 isoform X2 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014582C46)

HSP 1 Score: 174 bits (440), Expect = 6.840e-48
Identity = 105/264 (39.77%), Postives = 146/264 (55.30%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGI----------YVSVEVQQSLAKASPFIA-ALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNV----LNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPE--KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C  WAVVTT+F+P+ A + +      WCL+++AD   P  ++Y  E G           Y+SV  Q   +K  P +A A+P N FGRKN+GY+ A  H A  +WDFDDDN     LN  K + PLS+V D ++                NPYP  G  ES  WPRGFPLQDIK++      C  S +      +K+ ++Q+LA   PD+DAIYRLTR +P  F   P+  + L++ R + +P+NAQATL F      +LLP++V
Sbjct:  130 CDNWAVVTTVFSPSKAVQHIASL-TNWCLVIVADMKTPPESKYLFEMGNVNHITRKRVKYLSVPEQ---SKLYPLLAEAIPLNTFGRKNIGYMYAIHHEANYIWDFDDDNFGLIELNDFKPSNPLSYVTDCKA----------AHNTLLNPYPYFGVAESYTWPRGFPLQDIKNKTTLPKLCTKSTS------VKLGIVQSLANKQPDIDAIYRLTRDIPFNFRATPKSHRPLVLPRNSYTPFNAQATLWFAPAFPYLLLPISV 373          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.220e-45
Identity = 117/265 (44.15%), Postives = 149/265 (56.23%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGA-AFNPYPSMGATESPCWPRGFPLQDIK---SEAASELA---CGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRP---LPLYFNFE-----PE---KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C RWAV+T+IF PT   + +      WC++V+ D+ GP  AEY +E  IY++ + Q+ L      +  LPWNHFGRKN+GYL A  HGA V++D DDDN L   +A  P +    + +   S A    GP A   NPY   G   +  WPRGFPL  I    S    E+A    G SAA  E    ++ V+QALA HDPDVDA+YRLT P   LP  F+FE     PE    + +V     +PYNAQATLHF    + MLLPVTV
Sbjct:   28 CERWAVLTSIFEPTDTVRQLGAA-EDWCVVVVGDQNGP--AEYNVEGVIYLTPQDQEQLPYR--IVPLLPWNHFGRKNIGYLYAVHHGATVIYDVDDDNALIHPEAGVPHALSPVTPASTTSFAV---GPEAFVHNPYGCFGGPGN-VWPRGFPLDSINDADSNRCDEVAVDSAGESAAPEE--GWRLGVVQALANHDPDVDAVYRLTYPPGGLP--FDFEVPDPVPEGMSSLKIVPPAAFTPYNAQATLHFPPAFWGMLLPVTV 279          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: A0A1S3JBQ2_LINUN (probable glycosyltransferase STELLO2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JBQ2_LINUN)

HSP 1 Score: 166 bits (421), Expect = 2.160e-45
Identity = 99/247 (40.08%), Postives = 140/247 (56.68%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C +W V+TTIF P+   K + +    WC++V+ADK GP+  +Y + +  Y+SV  Q+S          L WNHFGRKN+GY+ A  HGAE ++D DDDNVL  AK   P           +   +     G  +NPYP M       WPRGFPL+ IKS+ A        + + E+   K+ ++Q+LA ++PDVDAIYR T+PLP  F+ + E  + V +  ++PYNAQAT+      F+  LPVTV
Sbjct:  102 CKKWVVITTIFEPSELVKQLSEI-TSWCVVVVADKKGPE--KYVVPNVKYLSVLEQESCQ--FHICKLLIWNHFGRKNIGYMYAIHHGAEYIYDTDDDNVLRRAKIPDPAK---------IKGVKNINMKGTVWNPYPMMSKYPD-SWPRGFPLEKIKSKEAKT-----QSFTDELPLGKIGIIQSLADNEPDVDAIYRFTQPLPFDFHHK-ELYVAVPQGVMTPYNAQATMTMYDAFFSTYLPVTV 327          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: W7TUS0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUS0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.500e-44
Identity = 101/258 (39.15%), Postives = 151/258 (58.53%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPF--IAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKC--RGPGAAFNPYPSMGATE----SPC--WPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPE-KILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C +WAVVTTIF PTA  K + +    WC++V+ D+  P   +   ++ I++  E Q++L    P+  I  L WNHFGRKN+G+L A  HGAEV++D DDDN+L       P   + D + G ++ ++     G    +NPYP+ G+      SP   WPRGFP+  I   +   ++ G    ++E   I +  +Q+LA HDPDVDA+YRLT  LPL F+     ++ ++    ++P+NAQAT+  KAG + MLLP+TV
Sbjct:  106 CNKWAVVTTIFGPTALVKQLVEM-KDWCVVVVGDQQSPSTYDIQSDNLIFLGPEEQEAL----PYHIIPLLKWNHFGRKNIGFLYAMQHGAEVIYDTDDDNILKVDSRGKPF--IPDCKLGELALSKDVVRSGQSQVYNPYPNFGSVRVKDGSPAFVWPRGFPVDLITDASTWNVSLGVEEETLEGGVITI--VQSLADHDPDVDALYRLTSHLPLRFHSGGSARLEVIPPGVMTPFNAQATVFGKAGFWGMLLPITV 354          
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Match: UPI0014553AFF (probable glycosyltransferase STELLO2 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014553AFF)

HSP 1 Score: 164 bits (414), Expect = 1.710e-44
Identity = 102/247 (41.30%), Postives = 138/247 (55.87%), Query Frame = 1
Query:    1 CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIYVSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNVLNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPRGFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRLTRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV 741
            C RW VVTTIF PT   K +      WC++V+ADK GP + + P  + ++++V  Q++          +PWNHF RKN+GY+ A  HGA+V++D DDDN L A         + D E   V  A+  +     +NPYP  G +    WPRGFPL  I  +    L    +A   ++      V+Q LA HDPDVDAIYR+T  LP  FN EP++ +L  R  LSPYNAQ T H +   + MLLP+TV
Sbjct:   87 CDRWIVVTTIFEPTGIMKTLGAT-SGWCMVVVADKKGPVSMDIP--NIVHLTVAEQKNCRYR--ICQLIPWNHFSRKNIGYMYAIEHGAKVIYDTDDDNGLLA-------DLMPDFE---VHFAQHVKLDSYVWNPYPEFGPSTH-IWPRGFPLNRITDDTTKSLTLVGAAKGEDI-----GVVQYLAQHDPDVDAIYRMTYDLPYDFNLEPKRFVLPPR-VLSPYNAQTTHHSQDAFWGMLLPITV 311          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130521 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXT1_9STRA3.770e-16493.55Uncharacterized protein (Fragment) n=3 Tax=Tribone... [more]
A0A818LZ82_9BILA9.760e-5441.30Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A0G4IGI5_PLABS1.050e-5042.13Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A812JXG3_SYMPI1.460e-4941.25STL1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A8B7XWL1_ACAPL2.860e-4944.53probable glycosyltransferase STELLO2 n=1 Tax=Acant... [more]
UPI0014582C466.840e-4839.77probable glycosyltransferase STELLO2 isoform X2 n=... [more]
D7FLI5_ECTSI1.220e-4544.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1S3JBQ2_LINUN2.160e-4540.08probable glycosyltransferase STELLO2 n=1 Tax=Lingu... [more]
W7TUS0_9STRA1.500e-4439.15Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
UPI0014553AFF1.710e-4441.30probable glycosyltransferase STELLO2 n=1 Tax=Aster... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:430436..435406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130521|gw1.29.9.1
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Descriptionplant-type cell wall cellulose biosynthetic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Evalue2e-46
Seed ortholog2880.D7FLI5
Hectar predicted targeting categorysignal peptide
TranscriptId130843
TrackFilteredModels1
ProteinId130521
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130521gene_9579Tribonema minus UTEX_B_3156 geneContig_29 430436..435406 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9579_1exon_9579_1Tribonema minus UTEX_B_3156 exonContig_29 430436..430971 +
exon_9579_2exon_9579_2Tribonema minus UTEX_B_3156 exonContig_29 435202..435406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9579CDS_9579Tribonema minus UTEX_B_3156 CDSContig_29 430436..430971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130521Trimin1|130521|gw1.29.9.1Tribonema minus UTEX_B_3156 polypeptideContig_29 430436..435406 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9579 ID=mRNA_9579|Name=jgi.p|Trimin1|130521|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_29:430436..435406+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCACCCGTTGGGCAGTTGTCACCACAATATTTGCGCCCACCGCTGCCAC
CAAGGCAGTTGATCAATGGTGGCCCAAGTGGTGTCTGCTAGTCATTGCTG
ATAAAGCGGGCCCTGATGCGGCAGAGTACCCACTTGAGCACGGCATATAC
GTGTCCGTAGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTTTCATTGC
GGCGCTCCCATGGAACCATTTTGGGAGGAAGAATGTGGGCTACCTGATTG
CTGCGTTGCATGGAGCAGAAGTTGTGTGGGATTTCGATGACGACAACGTC
CTCAATGCGGCAAAGGCAGCTGGCCCTCTGTCGTGGGTGCTGGACAGCGA
GAGCGGTATTGTCTCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGGCTT
TTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCTCGC
GGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGCATG
TGGGCACAGCGCGGCAAGCATTGAGGTGAGGCCAATCAAGGTGGCTGTGC
TGCAGGCGCTGGCTGGCCATGATCCGGATGTGGACGCTATCTATCGCCTC
ACCCGGCCTCTGCCGCTGTACTTCAACTTCGAACCGGAGAAGATCTTGCT
GGTCTCGCGGCGCACCCTTTCCCCATACAATGCTCAGGCCACACTGCACT
TCAAGGCAGGGCTATTCGCGATGCTTCTCCCGGTAACCGTC
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protein sequence of jgi.p|Trimin1|130521

>Trimin1|130521|gw1.29.9.1 ID=Trimin1|130521|gw1.29.9.1|Name=jgi.p|Trimin1|130521|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=247bp
CTRWAVVTTIFAPTAATKAVDQWWPKWCLLVIADKAGPDAAEYPLEHGIY
VSVEVQQSLAKASPFIAALPWNHFGRKNVGYLIAALHGAEVVWDFDDDNV
LNAAKAAGPLSWVLDSESGIVSAARKCRGPGAAFNPYPSMGATESPCWPR
GFPLQDIKSEAASELACGHSAASIEVRPIKVAVLQALAGHDPDVDAIYRL
TRPLPLYFNFEPEKILLVSRRTLSPYNAQATLHFKAGLFAMLLPVTV
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mRNA from alignment at Contig_29:430436..435406+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9579 ID=mRNA_9579|Name=jgi.p|Trimin1|130521|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4971bp|location=Sequence derived from alignment at Contig_29:430436..435406+ (Tribonema minus UTEX_B_3156 )
TGCACCCGTTGGGCAGTTGTCACCACAATATTTGCGCCCACCGCTGCCAC CAAGGCAGTTGATCAATGGTGGCCCAAGTGGTGTCTGCTAGTCATTGCTG ATAAAGCGGGCCCTGATGCGGCAGAGTACCCACTTGAGCACGGCATATAC GTGTCCGTAGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTTTCATTGC GGCGCTCCCATGGAACCATTTTGGGAGGAAGAATGTGGGCTACCTGATTG CTGCGTTGCATGGAGCAGAAGTTGTGTGGGATTTCGATGACGACAACGTC CTCAATGCGGCAAAGGCAGCTGGCCCTCTGTCGTGGGTGCTGGACAGCGA GAGCGGTATTGTCTCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGGCTT TTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCTCGC GGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGCATG TGGGCACAGCGCGGCAAGCATTGAGGTGAGGCCAATGTGATGGATAATTT AGCTACACTGCCTGCTCGCCGTTGCATTAGTGCTGGTTCAAGGGGCGAGA TGATATTGTGACAACGTTCCAGAACATCTTTTTCGTAGAGTGTGTTTTCC ATTAGCTTGGATGATAGACATGGAACACATGACAAAGACAGCAGCGCGTG TATCGATACTTTATACGTAGGGTTGCCGGCAGCGTATAACGTATTTATAT GTTATATGAATATATACGTTATATATACCGTTATATCGATTTCAATATAC GCTTTGGATTATAATGCCTGTTTCGCCGCCTAGGCGTGTTTCCGCGAAGC GGAAGCAGCGCAGACTTGCTGCCGCACGCTCCTGCGCCAAACGAAGCATT CAAAGGGTCGGTACATCTTGATAACTCAACAGGTGCACGTTCTAGCCAGT GAGAAGTCCTCACTTGCCCATCAATCAGCTGCAATCGTGACCTCCTAGCA CAAGCCTGGCTTGCCGCTCAGGAGCTGCCTCCTCCAAGCATGGTATACGT AGCAAATGTAAGGCTACGATCATCATCAGCTATGTGAAACCTCTGCAGCT ATCGTGGTATGTGTGGTGTGTGCTGAGGTCGTGCACGTGAACAGACTTCC GAGAACTTCAACTTGGCCAAATTGGACGAAATTTGGACATGGATTGCGCC AGCGCTCGGATGGCGCGCCAAGCGCGCGCGCACCGGCGACTTGAGGCTGC CCCCAGGGAAGCTGCTGGAGTTTGTGAACGACAAAGAGGAGTTGCAAAGT TTAGTCCTGAAGTCGTGCTTGGTGAAGGTTACTGTTGAGACGGATCAAAT CTGTGGTGCATGCACTGCAGCTGACACCCCTTGATGTTGGAACTGCTGCT GGTGACTGGGTGATGAACCTGAAAGGTACAATTTGCATGAGCAACTGCTA ATGCATGACATGTGCAGCACCACTGTTTGTGCGCTATGCATGAAAACAAG CCTAGCATCATATTTACATAAGGAACGTGTAGCGCATGCACTGGATGCCC AGGTGCATACGAGAATATGCATTTTGTTTCACGTGACATCCAAATTGAAC AACTGGCGACAGCTGACACCCCTTGATGTTGGAACTGCTGCTGGTGACTG GGTGATGAACCTGAAAGGTACAATTTGCATGAGCAACTGCTAATGCATGA CATGTGCAGCACCACTGTTTGTGCGCTATGCATGAAAACAAGCCTAGCAT CATGTTTACATAAGGAACGTGTAGCGCATGCACTGGATGCCCAGGTGCAT ACGAGAATATGCATTTTGTTTCACGTGACATCCAAGTTGAACAACTGGCG ATGCTGCAAAATCACATTGTATGCTTGCTTGAGTAGAAGGTGACGGATGT TATGGACAGCTGAGAACAGACGCTATGAGGCATGAAGAGAAAAAAATTCA ATCGGAGTTTGTCTTCAGAATTTGGCCAATTAATATACGCTGGCATACGC ATTATAGATTATATATACGTTATTTATATATGTTATACGCAGTATATGGA TTTTTATATACGCTGGGCGGCAACCCTATTTATACGCACTGTCATGCGAA CATGTGCAGAGCAGGAGCCTGACATTATATCTACTTTAGATGCACTCAGT GGCTCAAATTCTTTGATCATACCAATGCAACCTTTTGCAGCAAAACCTGC TTGGTATCATGGATACGTGTTTGTAATTTTTAGAGCTGCAGCGAGCAAAC TTTTTCCACACCTTGTTGCAGTAGGGCCCAGCGGCACCGCGGTACAGCCA GCACCAAAACACCATACTTGCAGGGTCACCGTGCACCATTGAGTGCTGTG CATGATTATCCTGATGACACACACAAGAATCAAGTTGAACTTCACAAGCA TATCATATTCCTCAGAGGAACAGGAATATTGAAAGTTTCACATCCAATGC AGCGTCAGAGCACATTCCTGGACACACTGCAGCATGCAGGCAGTTGGACA GGCTCATGCAGAGACAGCGACTTTTGGCCACAATCAATGGTGTTGGCGTC ATGGTTGTTGCGCCGTGCATATGTCACTGTCTCCGGACGGTCCCTCATGC CGATTGAGGACGAACATAAAACTTGGCCATCTACCCATATTACAAGTAAC AGTATACCCCTGCCTCCATCACGTACATACTTCTTTTGCTCGGATTTATT ACTGCTGCTGTGCTCTCTCAAGAGCAGCTCACACCACCCACACAAGTGTA AGTTTAATGATGTGGTGATTTGGTCAAGTTCAAGCAGGGAGGGCAGCACA GTGATCGCCAACTGGCAAATATCCTGGCCATGACGCTGTGAGAGGAAGCA TATTAGCTCTTGCATGAGGCAATTGCCAACATACGTACGCACTTGATCTC CGCTTCCACGCTGTCTGCCCATAATTTGGCAGTACCCCCTGCCAGGGCCT TTTAGGATGGTAGCTGCACCGCTGCATCCTCTCCTGTGCTGAACAGTAGG GGGGAGTGCGGCACATTCAACCCCCTGCACAACTCCAGCTACTCCTGCTG CTTGCTGCAGTACAGGCGCTGCTGCAGCCAACGCTGCTGCTGCAGCTGCT GCTGCTACTGTCGCTGCTGCCCCCTCAGCAGCAGCAAATGGCGAAGTGGG CAAATTTTCCGTAGGCAGCGACACAGTGGAGGATAAGCGAAAGGTATACA TCCAGTGCGACTTTTGCGACAAGCACTTGACAATGTCTGCAAGCAAGTGC TGAGCACATTCAAAGCAGTGAATACAGCTGCAAGGGGGGTAGACGAGTCG GGCAGCACTAAGCGCTGCAAGGTGGGCGTCACTTGCAGCATCATTTGCAG GCATCTGTGCCTCTGATGTCATGTGCAATGGCAGAGTAAGGGCAGAATTT TTTGTTGGTTAACCCGAATTTTGAGGAGGGCAACCCGGAATTATACCTGT TCGTGCACGAGGCCCGTAATCCCTAGGGGGCGGTCCGGGCCTCACTCAGT TGACAAGTAACGTCTAGTTGATGAAACTTCTCCAGAACAGTTATGACACA ATTCTGGGAAATTGGCATACTTCAACTTCCACGTGATGTTGAACTGGCGT ACATAACACATCATTACGATACTTTCGGCACATACGATATACAACTGAAG GCACAGGTTCACGATTATGGTTCAAGTTGATTCAGCCAGTACGATTGTAC GGCCACAGGTACAGCTACGATTACAGTAACCGTACGGTACGTGTACGGCC TAAGGGGTATATTTTGAACAACCTGCAATTCGGTAACTATTACTATATCT CCTTTCCAGCCCCTCGTCACCTGCTTGCTGCTGCTGTGGCATTGCACCTG CACGTTTGACTGCTGCTACTGCTACATCTGCTGGTCCCATTGCTGCAGCT GCTGCAGCAGCGGCAGTTGCTGCCTGTGACGTGGCACCAGCATAACCTAC TGAAGGCCCTGTTGTTCGCATAAGCTCTACATTCCGCAGACATATTTCTT GTACTAGCCCCCTTTCTTGAAGTACCATTTAGGTGATAATGAAGCCCAGG GGCGAGGTCTTGCGAGTTCCTCTGCTCTCACATATTGCAGTCCCACCCTG TTTTGGTGCTCACAAAAATGCCCCTTCCTCTTCCTTTTCACCCAGAGTGC ACTGCATTCTCTATTGCAACAACACACTGTTCAACTCCCACATTCAACAT CAGCTGCTGGTGTTTGCTGCAGATGCTGAGCTGGCCTTTCAGTGCACTAA CGCACAGCATACTACGTCATTTGACTTCTGCACCTCACACAATGATCAGA TGGCCTACCGGCAGCGCCACTACGCCATCCCACACCGCCGTGCCTCTTGC CCCAGTACTTGCAGTGTCTTCAACAATTTCAAGGTTTCCACAAAACTCTT GTAGTCCACACGCTCAATACCACGCCTGGTAATGAAGGCTGGTGAGGCAT GCCAATCAGGCCACTACATTACTGCACCCCATTCTTTGTGCAAGCTCACA TAAAGGGCATACCAGGCCCCTCTTTCGCATCAACAAAACAATTTCACTTG CCCCATGGGCTTAATCATCGATAGTACGGTACTTGATTCTTAGGCTTGAT AATGTCCTTGGCAGGCTCATGCCTGCAGACCGTGCCAGCCTAGCCAGAGT CACTTTCCTACACTCCCTGGATTCCTTGTCCTGAACCATTTGCAATCAAT CAGCACGCATCAATCAGCCTGTCGTGCTTTTGTCCTGCTGCGTGCTACAC AGGTGAATGTCACAAGCAAGGTGGCTGTGCTGCAGGCGCTGGCTGGCCAT GATCCGGATGTGGACGCTATCTATCGCCTCACCCGGCCTCTGCCGCTGTA CTTCAACTTCGAACCGGAGAAGATCTTGCTGGTCTCGCGGCGCACCCTTT CCCCATACAATGCTCAGGCCACACTGCACTTCAAGGCAGGGCTATTCGCG ATGCTTCTCCCGGTAACCGTC
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Coding sequence (CDS) from alignment at Contig_29:430436..435406+

>mRNA_9579 ID=mRNA_9579|Name=jgi.p|Trimin1|130521|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=741bp|location=Sequence derived from alignment at Contig_29:430436..435406+ (Tribonema minus UTEX_B_3156 )
TGCACCCGTTGGGCAGTTGTCACCACAATATTTGCGCCCACCGCTGCCAC
CAAGGCAGTTGATCAATGGTGGCCCAAGTGGTGTCTGCTAGTCATTGCTG
ATAAAGCGGGCCCTGATGCGGCAGAGTACCCACTTGAGCACGGCATATAC
GTGTCCGTAGAGGTGCAGCAGAGCCTTGCTAAGGCTTCCCCTTTCATTGC
GGCGCTCCCATGGAACCATTTTGGGAGGAAGAATGTGGGCTACCTGATTG
CTGCGTTGCATGGAGCAGAAGTTGTGTGGGATTTCGATGACGACAACGTC
CTCAATGCGGCAAAGGCAGCTGGCCCTCTGTCGTGGGTGCTGGACAGCGA
GAGCGGTATTGTCTCTGCAGCACGGAAGTGCAGAGGGCCAGGGGCGGCTT
TTAACCCTTATCCCAGCATGGGTGCGACGGAGTCGCCATGCTGGCCTCGC
GGGTTCCCACTCCAGGACATCAAGTCAGAAGCAGCAAGTGAGCTGGCATG
TGGGCACAGCGCGGCAAGCATTGAGGTGAGGCCAATCAAGGTGGCTGTGC
TGCAGGCGCTGGCTGGCCATGATCCGGATGTGGACGCTATCTATCGCCTC
ACCCGGCCTCTGCCGCTGTACTTCAACTTCGAACCGGAGAAGATCTTGCT
GGTCTCGCGGCGCACCCTTTCCCCATACAATGCTCAGGCCACACTGCACT
TCAAGGCAGGGCTATTCGCGATGCTTCTCCCGGTAACCGTC
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