mRNA_9489 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173782
Unique NamemRNA_9489
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA)

HSP 1 Score: 305 bits (781), Expect = 4.410e-104
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
Query:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQGDATA 465
            MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQGDATA
Sbjct:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQGDATA 155          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.120e-82
Identity = 122/148 (82.43%), Postives = 138/148 (93.24%), Query Frame = 1
Query:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAA 444
            MNSRKPVPHHLTDSSQRYCVMTVVAP GTNQK++EL IRVHGC+ES+AEANRWA+ LR+ N FFDVY LKTNEWAPLPPR+DEID+VNFTDGRVQAVFDSHREHQKG+K+EM++RLAQAHEEKTQRAALKASEEF ++ ++VA E AA
Sbjct:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAA 148          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A836CEP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP3_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.580e-74
Identity = 112/148 (75.68%), Postives = 130/148 (87.84%), Query Frame = 1
Query:    1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAA 444
            MNSRKPVPHHLTDSSQRYCVMT+VAP GTNQK+E+L IRVHGC+E++AEANRWA+ +RD NTFFDV+ LKTN WA LPP V+EID+VN TDGRVQA+ DSHREH+KG KREMVERLAQAHE+K +RAALKA+EEF  +V+  A E AA
Sbjct:   15 MNSRKPVPHHLTDSSQRYCVMTIVAPHGTNQKAEQLTIRVHGCRETMAEANRWAKAIRDDNTFFDVFCLKTNAWAALPPNVNEIDNVNMTDGRVQAILDSHREHEKGTKREMVERLAQAHEDKARRAALKANEEFKGIVEGAAEENAA 162          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.140e-47
Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   46 QRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERL 348
            QR+CVMTVVAPEGTNQKSE++ IRV+GCKE++AEANRWA+ +RDS   +DVYV+KTN WAPLPPR+ EID V FTD RVQAV DS+ EHQ+GQKR+M+ERL
Sbjct:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.130e-40
Identity = 70/129 (54.26%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   16 PVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEE----KTQRAALK 390
            PV   L D+ Q+Y V+++VAPEGT QKS+++ IR++GC+ +I +AN +ARKLRDSN FFDVY ++T+EWAPLPPR+D I+ V  TD R+Q++ DS+ EH KGQK E++ERL    +E    + QR ALK
Sbjct:    2 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALK 130          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.370e-37
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    4 NSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKRE 333
            ++R+PVP  L D  QR+CV+TVVAP GT Q+ +++ IR+HGCKE+  EA+ WAR LRDSN F+DVYV  TNEW PLPP V  ++ V FTD RVQ + D+     KG+K E
Sbjct:   15 DARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: Q91DI1_HAV01 (UKCH-2 n=2 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q91DI1_HAV01)

HSP 1 Score: 69.7 bits (169), Expect = 4.940e-11
Identity = 30/97 (30.93%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   28 HLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQK 318
            H+    Q + ++++VAPEG NQKS ++CI++ G  +++  A + A  L   +  FDV+V+   EW  +PP +D+I    + D  +  +    ++ QK
Sbjct:   63 HIKIDGQNFALISIVAPEGLNQKSNKVCIKIKGVFDTVENARQHANDLTKHDPTFDVFVVSLYEWLLVPPDMDKISEQEYVDEELNTIITEFKKSQK 159          
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A2E6C2V9_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C2V9_9EURY)

HSP 1 Score: 65.1 bits (157), Expect = 7.840e-10
Identity = 29/106 (27.36%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   46 QRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKG-------QKREMVE 342
            Q +  +++V PEG NQK ++  +++ GC  +  EA  WA+KL+  +  FDV+V+   +W  +PP   + +  ++ + +++ +   +R +Q+        +KR+M+E
Sbjct:   13 QLFACVSIVGPEGCNQKCDKFGLKIRGCFATQEEAANWAKKLQADDATFDVWVMSMGQWVLIPPDPAQCEDTHYANEKLEELMSGYRANQREAAKMFEERKRDMIE 118          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZEC6_9STRA4.410e-104100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY9_9STRA1.120e-8282.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEP3_9STRA2.580e-7475.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF96_9STRA1.140e-4773.27Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4I9_9STRA4.130e-4054.26Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CNB8_9STRA3.370e-3755.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
Q91DI1_HAV014.940e-1130.93UKCH-2 n=2 Tax=Heterosigma akashiwo virus 01 TaxID... [more]
A0A2E6C2V9_9EURY7.840e-1027.36Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:87858..88400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173782|e_gw1.106.84.1
Max annot lvl10239|Viruses
EggNOG OGs4QE6F@10239|Viruses,4QXY1@35237|dsDNA viruses no RNA stage
Evalue8.11e-12
Seed ortholog97195.Q91DI1_HAV01
Hectar predicted targeting categoryother localisation
TranscriptId174104
TrackFilteredModels1
ProteinId173782
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173782gene_9489Tribonema minus UTEX_B_3156 geneContig_106 87858..88400 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9489_1exon_9489_1Tribonema minus UTEX_B_3156 exonContig_106 87858..88400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9489CDS_9489Tribonema minus UTEX_B_3156 CDSContig_106 87858..88400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173782Trimin1|173782|e_gw1.106.84.1Tribonema minus UTEX_B_3156 polypeptideContig_106 87858..88400 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_106:87858..88400+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCGCGCAAGCCCGTCCCGCACCACCTCACGGACTCTTCGCAGCG
TTACTGTGTGATGACCGTCGTTGCACCGGAAGGCACCAACCAAAAATCAG
AAGAGCTCTGCATCAGAGTCCATGGCTGCAAAGAGAGCATCGCCGAAGCG
AATCGCTGGGCCCGCAAATTGCGCGATTCTAACACCTTTTTTGACGTCTA
CGTTCTCAAGACGAATGAATGGGCGCCACTCCCCCCGCGTGTCGATGAGA
TCGACAGCGTCAACTTCACTGATGGCAGAGTTCAGGCTGTGTTCGATTCG
CATCGCGAACATCAGAAGGGGCAGAAGCGGGAAATGGTCGAGCGCCTCGC
ACAAGCGCACGAGGAGAAGACACAACGCGCAGCACTCAAAGCGAGCGAAG
AGTTCGTTGAAGTTGTGAAGGACGTCGCGATTGAGAAAGCTGCAATGCAG
GGGGACGCCACTGCGCAGGATGAGGCCACTGCGCAGGAGGCGGCTGCCCC
GCAGGATGAGGCCGAAGGTGCGGAGGAGAGCAAGGGCGAGTGA
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protein sequence of jgi.p|Trimin1|173782

>Trimin1|173782|e_gw1.106.84.1 ID=Trimin1|173782|e_gw1.106.84.1|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp
MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEA
NRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDS
HREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQ
GDATAQDEATAQEAAAPQDEAEGAEESKGE*
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mRNA from alignment at Contig_106:87858..88400+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_106:87858..88400+ (Tribonema minus UTEX_B_3156 )
ATGAACTCGCGCAAGCCCGTCCCGCACCACCTCACGGACTCTTCGCAGCG TTACTGTGTGATGACCGTCGTTGCACCGGAAGGCACCAACCAAAAATCAG AAGAGCTCTGCATCAGAGTCCATGGCTGCAAAGAGAGCATCGCCGAAGCG AATCGCTGGGCCCGCAAATTGCGCGATTCTAACACCTTTTTTGACGTCTA CGTTCTCAAGACGAATGAATGGGCGCCACTCCCCCCGCGTGTCGATGAGA TCGACAGCGTCAACTTCACTGATGGCAGAGTTCAGGCTGTGTTCGATTCG CATCGCGAACATCAGAAGGGGCAGAAGCGGGAAATGGTCGAGCGCCTCGC ACAAGCGCACGAGGAGAAGACACAACGCGCAGCACTCAAAGCGAGCGAAG AGTTCGTTGAAGTTGTGAAGGACGTCGCGATTGAGAAAGCTGCAATGCAG GGGGACGCCACTGCGCAGGATGAGGCCACTGCGCAGGAGGCGGCTGCCCC GCAGGATGAGGCCGAAGGTGCGGAGGAGAGCAAGGGCGAGTGA
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Coding sequence (CDS) from alignment at Contig_106:87858..88400+

>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_106:87858..88400+ (Tribonema minus UTEX_B_3156 )
ATGAACTCGCGCAAGCCCGTCCCGCACCACCTCACGGACTCTTCGCAGCG
TTACTGTGTGATGACCGTCGTTGCACCGGAAGGCACCAACCAAAAATCAG
AAGAGCTCTGCATCAGAGTCCATGGCTGCAAAGAGAGCATCGCCGAAGCG
AATCGCTGGGCCCGCAAATTGCGCGATTCTAACACCTTTTTTGACGTCTA
CGTTCTCAAGACGAATGAATGGGCGCCACTCCCCCCGCGTGTCGATGAGA
TCGACAGCGTCAACTTCACTGATGGCAGAGTTCAGGCTGTGTTCGATTCG
CATCGCGAACATCAGAAGGGGCAGAAGCGGGAAATGGTCGAGCGCCTCGC
ACAAGCGCACGAGGAGAAGACACAACGCGCAGCACTCAAAGCGAGCGAAG
AGTTCGTTGAAGTTGTGAAGGACGTCGCGATTGAGAAAGCTGCAATGCAG
GGGGACGCCACTGCGCAGGATGAGGCCACTGCGCAGGAGGCGGCTGCCCC
GCAGGATGAGGCCGAAGGTGCGGAGGAGAGCAAGGGCGAGTGA
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