mRNA_9489 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA) HSP 1 Score: 305 bits (781), Expect = 4.410e-104 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 Query: 1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQGDATA 465 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQGDATA Sbjct: 1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAAMQGDATA 155
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA) HSP 1 Score: 251 bits (640), Expect = 1.120e-82 Identity = 122/148 (82.43%), Postives = 138/148 (93.24%), Query Frame = 1 Query: 1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAA 444 MNSRKPVPHHLTDSSQRYCVMTVVAP GTNQK++EL IRVHGC+ES+AEANRWA+ LR+ N FFDVY LKTNEWAPLPPR+DEID+VNFTDGRVQAVFDSHREHQKG+K+EM++RLAQAHEEKTQRAALKASEEF ++ ++VA E AA Sbjct: 1 MNSRKPVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEEKTQRAALKASEEFGKIAEEVAQEDAA 148
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A836CEP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP3_9STRA) HSP 1 Score: 230 bits (586), Expect = 2.580e-74 Identity = 112/148 (75.68%), Postives = 130/148 (87.84%), Query Frame = 1 Query: 1 MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEEKTQRAALKASEEFVEVVKDVAIEKAA 444 MNSRKPVPHHLTDSSQRYCVMT+VAP GTNQK+E+L IRVHGC+E++AEANRWA+ +RD NTFFDV+ LKTN WA LPP V+EID+VN TDGRVQA+ DSHREH+KG KREMVERLAQAHE+K +RAALKA+EEF +V+ A E AA Sbjct: 15 MNSRKPVPHHLTDSSQRYCVMTIVAPHGTNQKAEQLTIRVHGCRETMAEANRWAKAIRDDNTFFDVFCLKTNAWAALPPNVNEIDNVNMTDGRVQAILDSHREHEKGTKREMVERLAQAHEDKARRAALKANEEFKGIVEGAAEENAA 162
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.140e-47 Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 1 Query: 46 QRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERL 348 QR+CVMTVVAPEGTNQKSE++ IRV+GCKE++AEANRWA+ +RDS +DVYV+KTN WAPLPPR+ EID V FTD RVQAV DS+ EHQ+GQKR+M+ERL Sbjct: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA) HSP 1 Score: 143 bits (361), Expect = 4.130e-40 Identity = 70/129 (54.26%), Postives = 97/129 (75.19%), Query Frame = 1 Query: 16 PVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEE----KTQRAALK 390 PV L D+ Q+Y V+++VAPEGT QKS+++ IR++GC+ +I +AN +ARKLRDSN FFDVY ++T+EWAPLPPR+D I+ V TD R+Q++ DS+ EH KGQK E++ERL +E + QR ALK Sbjct: 2 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALK 130
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.370e-37 Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 4 NSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKRE 333 ++R+PVP L D QR+CV+TVVAP GT Q+ +++ IR+HGCKE+ EA+ WAR LRDSN F+DVYV TNEW PLPP V ++ V FTD RVQ + D+ KG+K E Sbjct: 15 DARRPVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: Q91DI1_HAV01 (UKCH-2 n=2 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q91DI1_HAV01) HSP 1 Score: 69.7 bits (169), Expect = 4.940e-11 Identity = 30/97 (30.93%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 28 HLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQK 318 H+ Q + ++++VAPEG NQKS ++CI++ G +++ A + A L + FDV+V+ EW +PP +D+I + D + + ++ QK Sbjct: 63 HIKIDGQNFALISIVAPEGLNQKSNKVCIKIKGVFDTVENARQHANDLTKHDPTFDVFVVSLYEWLLVPPDMDKISEQEYVDEELNTIITEFKKSQK 159
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Match: A0A2E6C2V9_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C2V9_9EURY) HSP 1 Score: 65.1 bits (157), Expect = 7.840e-10 Identity = 29/106 (27.36%), Postives = 61/106 (57.55%), Query Frame = 1 Query: 46 QRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKG-------QKREMVE 342 Q + +++V PEG NQK ++ +++ GC + EA WA+KL+ + FDV+V+ +W +PP + + ++ + +++ + +R +Q+ +KR+M+E Sbjct: 13 QLFACVSIVGPEGCNQKCDKFGLKIRGCFATQEEAANWAKKLQADDATFDVWVMSMGQWVLIPPDPAQCEDTHYANEKLEELMSGYRANQREAAKMFEERKRDMIE 118 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173782 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9489 ID=mRNA_9489|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_106:87858..88400+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACTCGCGCAAGCCCGTCCCGCACCACCTCACGGACTCTTCGCAGCGback to top protein sequence of jgi.p|Trimin1|173782 >Trimin1|173782|e_gw1.106.84.1 ID=Trimin1|173782|e_gw1.106.84.1|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp MNSRKPVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEAback to top mRNA from alignment at Contig_106:87858..88400+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9489 ID=mRNA_9489|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_106:87858..88400+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_106:87858..88400+ >mRNA_9489 ID=mRNA_9489|Name=jgi.p|Trimin1|173782|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_106:87858..88400+ (Tribonema minus UTEX_B_3156 )back to top |