mRNA_9439 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|78369
Unique NamemRNA_9439
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A835YNY4_9STRA (Ribosomal protein S3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY4_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.010e-79
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV
Sbjct:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: B7T1X8_VAULI (30S ribosomal protein S3, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X8_VAULI)

HSP 1 Score: 192 bits (489), Expect = 3.950e-60
Identity = 95/123 (77.24%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            E G GLD +DK+L NLLPNKKT INI+EI +++++ADLLAD+LV+QLE+RIPFRRAMK I+E VQ+ +IKGIKIQIAGR+NGAEIARTEWLREG+VPLQTLRADIDYS+KTAQTIYGI+GIK+
Sbjct:   86 ELGKGLDILDKNLCNLLPNKKTLINIIEIKDIFNYADLLADMLVLQLENRIPFRRAMKRILEYVQKNRIKGIKIQIAGRLNGAEIARTEWLREGQVPLQTLRADIDYSFKTAQTIYGIIGIKI 208          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A1C9CA87_9FLOR (30S ribosomal protein S3, chloroplastic n=1 Tax=Sebdenia flabellata TaxID=42024 RepID=A0A1C9CA87_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 4.610e-46
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    7 GSGLDKIDKSLTN-LLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            G+G+DK+ + LTN LL NK  RINI+EIT     A L+A+ +  QLE RI FRRA++  I+R Q+ +IKGIK+Q++GR+NGAEIAR+EW+REGRVPLQTLRADIDYSYKTAQTIYGILGIKV
Sbjct:   81 GTGIDKLREELTNKLLNNKHIRINIIEITEPDTQAALIAEFIAQQLEKRIAFRRAVRQGIQRSQKTEIKGIKVQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 202          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: D1J746_ECTSI (30S ribosomal protein S3, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J746_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.990e-46
Identity = 81/124 (65.32%), Postives = 103/124 (83.06%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            +SG+ L K+D+ L+ LL NKK  INIVEIT  Y  A +L D+LV +LE+R+ FR  ++ I++R + E+++KGIKIQIAGR+NGAEIARTEW+REGRVPLQTLRA+IDYSYKTAQT YGILGIK+
Sbjct:   86 KSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKI 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A8F0FAX9_9PHAE (Ribosomal protein S3 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAX9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.200e-45
Identity = 82/124 (66.13%), Postives = 102/124 (82.26%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEE-KIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            +SGS L  +D++L+ LL NKK  INIVEI   Y  A +L DILV +LE+RI FR+ ++ I++R + E ++KGIK+QIAGR+NGAEIARTEW+REGRVPLQTLRADIDYSYKTAQT YGILGIK+
Sbjct:   86 KSGSILRVLDQNLSLLLKNKKVLINIVEIKQPYKEATILVDILVRKLEERISFRKCIREILQRYRTEGELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKI 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A0S0FBE5_COSCS (30S ribosomal protein S3, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0FBE5_COSCS)

HSP 1 Score: 155 bits (391), Expect = 3.420e-45
Identity = 79/124 (63.71%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            +SGS L  +D+ L+ LL NKK  INIVEIT  Y  A +L D+LV +LE+R+ FR+ ++ I+ R + E+++KGIK+QIAGR+NGAEIARTEW+REGRVPLQTLRA+IDYSYK AQT YGILGIK+
Sbjct:   86 KSGSLLRTLDQELSALLKNKKVLINIVEITKPYTEASILVDVLVKKLEERVSFRKCIREILRRYRTEDELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKVAQTTYGILGIKI 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A1Z1MKI1_SPYFI (30S ribosomal protein S3, chloroplastic n=1 Tax=Spyridia filamentosa TaxID=196632 RepID=A0A1Z1MKI1_SPYFI)

HSP 1 Score: 153 bits (387), Expect = 1.270e-44
Identity = 79/122 (64.75%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    7 GSGLDKIDKSLTNLLP-NKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            G+G+D + ++L   LP NKK RINI+EIT    +A LL + +  QLE RI FRRAM+  I+R Q+  IKG+KIQ+ GR+NGAEIARTEW+REGRVPLQTLRADIDY+Y TAQTIYGILGIK+
Sbjct:   81 GNGIDNLRENLIKKLPDNKKIRINIIEITEPDTNAVLLGEFIAQQLEKRIAFRRAMRQGIQRAQKTNIKGVKIQVGGRLNGAEIARTEWIREGRVPLQTLRADIDYAYTTAQTIYGILGIKI 202          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: D1GJS6_FUCVE (30S ribosomal protein S3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJS6_FUCVE)

HSP 1 Score: 152 bits (385), Expect = 2.770e-44
Identity = 77/124 (62.10%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            +SG  L ++D+ L +L+ +KK  INI+E+   Y  A +L DILV +LE+R+ +R+ ++ I++R + EE +KGIKIQIAGR+NGAEIARTEW+REGRVPLQTLRADIDYSYKTAQT YGILGIK+
Sbjct:   86 KSGLLLKELDEKLQSLIKDKKVLINIIEVEQPYQEASILVDILVKKLEERVAYRKCVREILQRYRTEEGLKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKL 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A7S6U9Z8_9STRA (30S ribosomal protein S3, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.500e-44
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            E GS L  +D  LT+LL  +K  +N++E+ + Y  A LLADILV QLE+R+PFRRA+K IIER Q+    G+K+QI GR+NGAEIAR EWL++GRVPLQTLRA+IDYS KTA+T YGILG+K+
Sbjct:   86 EFGSNLYGLDNCLTSLLRTEKVLLNVIEVKDPYLEATLLADILVQQLEERVPFRRAIKSIIERAQQGNPLGVKVQIGGRLNGAEIARVEWLQKGRVPLQTLRANIDYSNKTARTTYGILGVKI 208          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A2I4Q2H9_9PHAE (30S ribosomal protein S3, chloroplastic n=2 Tax=Eukaryota TaxID=2759 RepID=A0A2I4Q2H9_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.550e-44
Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 369
            ESGS L K+DK +++L+  K   INI++IT  Y  A LL D+L+  L+ RI FR+ ++ I+ER + E ++ GIKIQIAGR+NGAEIARTEW+REGRVPLQTLRADIDY YKTAQT YGILGIK+
Sbjct:   86 ESGSRLRKLDKKISSLVEPKTILINIIKITKPYTEATLLVDVLIFNLQKRISFRKCIRKILERYRIENELNGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYCYKTAQTSYGILGIKI 209          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNY4_9STRA1.010e-79100.00Ribosomal protein S3 (Fragment) n=1 Tax=Tribonema ... [more]
B7T1X8_VAULI3.950e-6077.2430S ribosomal protein S3, chloroplastic n=1 Tax=Va... [more]
A0A1C9CA87_9FLOR4.610e-4667.2130S ribosomal protein S3, chloroplastic n=1 Tax=Se... [more]
D1J746_ECTSI5.990e-4665.3230S ribosomal protein S3, chloroplastic n=3 Tax=Ec... [more]
A0A8F0FAX9_9PHAE1.200e-4566.13Ribosomal protein S3 n=1 Tax=Desmarestia aculeata ... [more]
A0A0S0FBE5_COSCS3.420e-4563.7130S ribosomal protein S3, chloroplastic n=33 Tax=P... [more]
A0A1Z1MKI1_SPYFI1.270e-4464.7530S ribosomal protein S3, chloroplastic n=1 Tax=Sp... [more]
D1GJS6_FUCVE2.770e-4462.1030S ribosomal protein S3, chloroplastic n=3 Tax=Fu... [more]
A0A7S6U9Z8_9STRA3.500e-4461.7930S ribosomal protein S3, chloroplastic n=1 Tax=Sc... [more]
A0A2I4Q2H9_9PHAE5.550e-4462.9030S ribosomal protein S3, chloroplastic n=2 Tax=Eu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:779839..780207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|78369|CE78368_552
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02982
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred namerps3
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0092@1|root,2QV63@2759|Eukaryota
Evalue9.83e-47
Seed ortholog2880.D1J746
Hectar predicted targeting categoryother localisation
TranscriptId78691
TrackFilteredModels1
ProteinId78369
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78369gene_9439Tribonema minus UTEX_B_3156 geneContig_58 779839..780207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9439_1exon_9439_1Tribonema minus UTEX_B_3156 exonContig_58 779839..780207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9439CDS_9439Tribonema minus UTEX_B_3156 CDSContig_58 779839..780207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78369Trimin1|78369|CE78368_552Tribonema minus UTEX_B_3156 polypeptideContig_58 779839..780207 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9439 ID=mRNA_9439|Name=jgi.p|Trimin1|78369|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_58:779839..780207+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAATCTGGTAGCGGGTTAGATAAAATCGATAAAAGCCTTACAAATCTTTT
ACCAAATAAAAAAACTCGTATAAATATTGTTGAAATTACAAATGTTTATC
ACCACGCTGATCTATTAGCAGATATTTTAGTAGTACAGTTAGAAGATCGG
ATTCCTTTTAGACGAGCAATGAAAGGTATTATTGAAAGAGTGCAAGAAGA
AAAAATAAAAGGTATTAAAATTCAAATTGCAGGACGTGTTAATGGTGCTG
AAATCGCTCGAACAGAATGGCTACGCGAAGGTCGTGTGCCTTTACAAACT
TTACGTGCAGATATTGATTACTCTTATAAAACTGCCCAAACAATTTATGG
GATACTTGGTATAAAAGTT
back to top

protein sequence of jgi.p|Trimin1|78369

>Trimin1|78369|CE78368_552 ID=Trimin1|78369|CE78368_552|Name=jgi.p|Trimin1|78369|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDR
IPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQT
LRADIDYSYKTAQTIYGILGIKV
back to top

mRNA from alignment at Contig_58:779839..780207+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9439 ID=mRNA_9439|Name=jgi.p|Trimin1|78369|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_58:779839..780207+ (Tribonema minus UTEX_B_3156 )
GAATCTGGTAGCGGGTTAGATAAAATCGATAAAAGCCTTACAAATCTTTT ACCAAATAAAAAAACTCGTATAAATATTGTTGAAATTACAAATGTTTATC ACCACGCTGATCTATTAGCAGATATTTTAGTAGTACAGTTAGAAGATCGG ATTCCTTTTAGACGAGCAATGAAAGGTATTATTGAAAGAGTGCAAGAAGA AAAAATAAAAGGTATTAAAATTCAAATTGCAGGACGTGTTAATGGTGCTG AAATCGCTCGAACAGAATGGCTACGCGAAGGTCGTGTGCCTTTACAAACT TTACGTGCAGATATTGATTACTCTTATAAAACTGCCCAAACAATTTATGG GATACTTGGTATAAAAGTT
back to top

Coding sequence (CDS) from alignment at Contig_58:779839..780207+

>mRNA_9439 ID=mRNA_9439|Name=jgi.p|Trimin1|78369|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_58:779839..780207+ (Tribonema minus UTEX_B_3156 )
GAATCTGGTAGCGGGTTAGATAAAATCGATAAAAGCCTTACAAATCTTTT
ACCAAATAAAAAAACTCGTATAAATATTGTTGAAATTACAAATGTTTATC
ACCACGCTGATCTATTAGCAGATATTTTAGTAGTACAGTTAGAAGATCGG
ATTCCTTTTAGACGAGCAATGAAAGGTATTATTGAAAGAGTGCAAGAAGA
AAAAATAAAAGGTATTAAAATTCAAATTGCAGGACGTGTTAATGGTGCTG
AAATCGCTCGAACAGAATGGCTACGCGAAGGTCGTGTGCCTTTACAAACT
TTACGTGCAGATATTGATTACTCTTATAAAACTGCCCAAACAATTTATGG
GATACTTGGTATAAAAGTT
back to top