Trimin1|78369|CE78368_552 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|78369
Unique NameTrimin1|78369|CE78368_552
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length123
Homology
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A835YNY4_9STRA (Ribosomal protein S3 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY4_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.010e-79
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV
Sbjct:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: B7T1X8_VAULI (30S ribosomal protein S3, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X8_VAULI)

HSP 1 Score: 192 bits (489), Expect = 3.950e-60
Identity = 95/123 (77.24%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            E G GLD +DK+L NLLPNKKT INI+EI +++++ADLLAD+LV+QLE+RIPFRRAMK I+E VQ+ +IKGIKIQIAGR+NGAEIARTEWLREG+VPLQTLRADIDYS+KTAQTIYGI+GIK+
Sbjct:   86 ELGKGLDILDKNLCNLLPNKKTLINIIEIKDIFNYADLLADMLVLQLENRIPFRRAMKRILEYVQKNRIKGIKIQIAGRLNGAEIARTEWLREGQVPLQTLRADIDYSFKTAQTIYGIIGIKI 208          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A1C9CA87_9FLOR (30S ribosomal protein S3, chloroplastic n=1 Tax=Sebdenia flabellata TaxID=42024 RepID=A0A1C9CA87_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 4.610e-46
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 0
Query:    3 GSGLDKIDKSLTN-LLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            G+G+DK+ + LTN LL NK  RINI+EIT     A L+A+ +  QLE RI FRRA++  I+R Q+ +IKGIK+Q++GR+NGAEIAR+EW+REGRVPLQTLRADIDYSYKTAQTIYGILGIKV
Sbjct:   81 GTGIDKLREELTNKLLNNKHIRINIIEITEPDTQAALIAEFIAQQLEKRIAFRRAVRQGIQRSQKTEIKGIKVQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 202          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: D1J746_ECTSI (30S ribosomal protein S3, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J746_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.990e-46
Identity = 81/124 (65.32%), Postives = 103/124 (83.06%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            +SG+ L K+D+ L+ LL NKK  INIVEIT  Y  A +L D+LV +LE+R+ FR  ++ I++R + E+++KGIKIQIAGR+NGAEIARTEW+REGRVPLQTLRA+IDYSYKTAQT YGILGIK+
Sbjct:   86 KSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKI 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A8F0FAX9_9PHAE (Ribosomal protein S3 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAX9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.200e-45
Identity = 82/124 (66.13%), Postives = 102/124 (82.26%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEE-KIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            +SGS L  +D++L+ LL NKK  INIVEI   Y  A +L DILV +LE+RI FR+ ++ I++R + E ++KGIK+QIAGR+NGAEIARTEW+REGRVPLQTLRADIDYSYKTAQT YGILGIK+
Sbjct:   86 KSGSILRVLDQNLSLLLKNKKVLINIVEIKQPYKEATILVDILVRKLEERISFRKCIREILQRYRTEGELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKI 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A0S0FBE5_COSCS (30S ribosomal protein S3, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0FBE5_COSCS)

HSP 1 Score: 155 bits (391), Expect = 3.420e-45
Identity = 79/124 (63.71%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            +SGS L  +D+ L+ LL NKK  INIVEIT  Y  A +L D+LV +LE+R+ FR+ ++ I+ R + E+++KGIK+QIAGR+NGAEIARTEW+REGRVPLQTLRA+IDYSYK AQT YGILGIK+
Sbjct:   86 KSGSLLRTLDQELSALLKNKKVLINIVEITKPYTEASILVDVLVKKLEERVSFRKCIREILRRYRTEDELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKVAQTTYGILGIKI 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A1Z1MKI1_SPYFI (30S ribosomal protein S3, chloroplastic n=1 Tax=Spyridia filamentosa TaxID=196632 RepID=A0A1Z1MKI1_SPYFI)

HSP 1 Score: 153 bits (387), Expect = 1.270e-44
Identity = 79/122 (64.75%), Postives = 97/122 (79.51%), Query Frame = 0
Query:    3 GSGLDKIDKSLTNLLP-NKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            G+G+D + ++L   LP NKK RINI+EIT    +A LL + +  QLE RI FRRAM+  I+R Q+  IKG+KIQ+ GR+NGAEIARTEW+REGRVPLQTLRADIDY+Y TAQTIYGILGIK+
Sbjct:   81 GNGIDNLRENLIKKLPDNKKIRINIIEITEPDTNAVLLGEFIAQQLEKRIAFRRAMRQGIQRAQKTNIKGVKIQVGGRLNGAEIARTEWIREGRVPLQTLRADIDYAYTTAQTIYGILGIKI 202          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: D1GJS6_FUCVE (30S ribosomal protein S3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJS6_FUCVE)

HSP 1 Score: 152 bits (385), Expect = 2.770e-44
Identity = 77/124 (62.10%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            +SG  L ++D+ L +L+ +KK  INI+E+   Y  A +L DILV +LE+R+ +R+ ++ I++R + EE +KGIKIQIAGR+NGAEIARTEW+REGRVPLQTLRADIDYSYKTAQT YGILGIK+
Sbjct:   86 KSGLLLKELDEKLQSLIKDKKVLINIIEVEQPYQEASILVDILVKKLEERVAYRKCVREILQRYRTEEGLKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKL 209          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A7S6U9Z8_9STRA (30S ribosomal protein S3, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.500e-44
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            E GS L  +D  LT+LL  +K  +N++E+ + Y  A LLADILV QLE+R+PFRRA+K IIER Q+    G+K+QI GR+NGAEIAR EWL++GRVPLQTLRA+IDYS KTA+T YGILG+K+
Sbjct:   86 EFGSNLYGLDNCLTSLLRTEKVLLNVIEVKDPYLEATLLADILVQQLEERVPFRRAIKSIIERAQQGNPLGVKVQIGGRLNGAEIARVEWLQKGRVPLQTLRANIDYSNKTARTTYGILGVKI 208          
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Match: A0A2I4Q2H9_9PHAE (30S ribosomal protein S3, chloroplastic n=2 Tax=Eukaryota TaxID=2759 RepID=A0A2I4Q2H9_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.550e-44
Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 0
Query:    1 ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDRIPFRRAMKGIIERVQ-EEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQTLRADIDYSYKTAQTIYGILGIKV 123
            ESGS L K+DK +++L+  K   INI++IT  Y  A LL D+L+  L+ RI FR+ ++ I+ER + E ++ GIKIQIAGR+NGAEIARTEW+REGRVPLQTLRADIDY YKTAQT YGILGIK+
Sbjct:   86 ESGSRLRKLDKKISSLVEPKTILINIIKITKPYTEATLLVDVLIFNLQKRISFRKCIRKILERYRIENELNGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYCYKTAQTSYGILGIKI 209          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|78369 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNY4_9STRA1.010e-79100.00Ribosomal protein S3 (Fragment) n=1 Tax=Tribonema ... [more]
B7T1X8_VAULI3.950e-6077.2430S ribosomal protein S3, chloroplastic n=1 Tax=Va... [more]
A0A1C9CA87_9FLOR4.610e-4667.2130S ribosomal protein S3, chloroplastic n=1 Tax=Se... [more]
D1J746_ECTSI5.990e-4665.3230S ribosomal protein S3, chloroplastic n=3 Tax=Ec... [more]
A0A8F0FAX9_9PHAE1.200e-4566.13Ribosomal protein S3 n=1 Tax=Desmarestia aculeata ... [more]
A0A0S0FBE5_COSCS3.420e-4563.7130S ribosomal protein S3, chloroplastic n=33 Tax=P... [more]
A0A1Z1MKI1_SPYFI1.270e-4464.7530S ribosomal protein S3, chloroplastic n=1 Tax=Sp... [more]
D1GJS6_FUCVE2.770e-4462.1030S ribosomal protein S3, chloroplastic n=3 Tax=Fu... [more]
A0A7S6U9Z8_9STRA3.500e-4461.7930S ribosomal protein S3, chloroplastic n=1 Tax=Sc... [more]
A0A2I4Q2H9_9PHAE5.550e-4462.9030S ribosomal protein S3, chloroplastic n=2 Tax=Eu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 45..123
e-value: 7.7E-33
score: 112.8
IPR005704Ribosomal protein S3, bacterial-typeTIGRFAMTIGR01009TIGR01009coord: 2..123
e-value: 5.8E-46
score: 154.9
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3D3.30.1140.32coord: 33..123
e-value: 7.1E-35
score: 121.4
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILY54821Ribosomal protein S3 C-terminal domaincoord: 31..123
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 3..123
NoneNo IPR availablePANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3coord: 3..123
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 86..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:779839..780207 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|78369mRNA_9439Tribonema minus UTEX_B_3156 mRNAContig_58 779839..780207 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|78369|CE78368_552 ID=Trimin1|78369|CE78368_552|Name=jgi.p|Trimin1|78369|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
ESGSGLDKIDKSLTNLLPNKKTRINIVEITNVYHHADLLADILVVQLEDR
IPFRRAMKGIIERVQEEKIKGIKIQIAGRVNGAEIARTEWLREGRVPLQT
LRADIDYSYKTAQTIYGILGIKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001351Ribosomal_S3_C
IPR005704Ribosomal_S3_bac-typ
IPR036419Ribosomal_S3_C_sf
IPR018280Ribosomal_S3_CS