mRNA_9309 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A836CDG1_9STRA (CBP/p300-type HAT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG1_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.910e-54 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 Query: 1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL Sbjct: 1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 84
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A836CDY7_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY7_9STRA) HSP 1 Score: 115 bits (287), Expect = 8.960e-30 Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 1 Query: 10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 TSKALSL QLID VMS +V+AH+YGH+ A AC+ GRVYVSYLDS+PFLQPYSS SAAYQM LV YFDWVR RGF HL Sbjct: 89 TSKALSLFQLIDGAWVMSFMVYAHEYGHD-APACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHL 168
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A835YPS5_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS5_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.790e-21 Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1 Query: 10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 TSKAL L QLID VMS +++ ++YG + A AC+ GRVY+SYLDS+P++QPY+ S Y+ +L YFDWVR RGFS HL Sbjct: 67 TSKALCLFQLIDGAWVMSFMLYTYEYGDD-APACNRGRVYLSYLDSVPYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHL 146
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A835YQL1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL1_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.110e-19 Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1 Query: 10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 TSKAL L QLI+ VMS ++++++YG + + AC+ GRVY+SYLDS+ ++QPY+ S Y+ +L YFDWVR RGFS HL Sbjct: 67 TSKALCLFQLINGAWVMSLMLYSYEYGDD-SPACNRGRVYLSYLDSVTYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHL 146
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A836CF44_9STRA (Histone acetyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF44_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.720e-10 Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 T+K + + Q +D V+ ++ AH+YG + A + GRVY+SYLDS+PF+ P + +A +Q +L Y D R RGF+ AHL Sbjct: 123 TAKTIGVFQELDGVWVLFFVLMAHEYGAD-APLANRGRVYISYLDSVPFMWPCHARTALFQGVLHAYLDCSRRRGFTKAHL 202
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.730e-8 Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1 Query: 13 SKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 SKALS+ Q +D V ++ +YG + A + R Y+SYLDS+ + +P +A Y +LV Y DW+R RGF AAH+ Sbjct: 1444 SKALSMFQRVDGVEVCLFSMYVQEYGAD-APYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHI 1522
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A7S1Y085_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y085_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.140e-8 Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 + V SK + L Q ID V+ ++ ++YG + GRVY+SYLDS+ +LQP + Y +L Y +WVR RGF AH+ Sbjct: 362 FPVRSKCIVLFQKIDGVDVVLFAMYVYEYGMR-CPEPNRGRVYISYLDSVHYLQPRQYRTEVYHEILASYLEWVRVRGFHTAHI 444
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: B8C9A0_THAPS (Histone acetyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9A0_THAPS) HSP 1 Score: 56.2 bits (134), Expect = 2.800e-7 Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 + VTSK + L Q I V+ ++ ++YG + +A + RVY+SYLDS+ +L+P S + YQ ++V Y + R RGF AH+ Sbjct: 381 FPVTSKCILLFQKIHGVDVLLFGMYVYEYG-DKCAAPNRRRVYISYLDSVQYLEPSSYRTTTYQSIIVEYLRYARMRGFHTAHI 463
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: G4ZB91_PHYSP (Histone acetyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZB91_PHYSP) HSP 1 Score: 55.5 bits (132), Expect = 5.290e-7 Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 SVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 S S+ L L Q + V ++A ++G + + VY++YLDS+ +L+P S+ +AAY ++L+ YFD+VR GFS H+ Sbjct: 747 SYLSRGLYLFQKHEGMEVCLFTIYAQEFGDDCELEANRRAVYIAYLDSVRYLKPASARTAAYHLILLAYFDYVRRHGFSRVHI 829
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: H3H0Z0_PHYRM (Histone acetyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0Z0_PHYRM) HSP 1 Score: 55.5 bits (132), Expect = 5.300e-7 Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 SVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252 S S+ L L Q + V + A ++G + A + VY++YLDS+ +L+P S+ +AAY ++++ YFD+VR GFS H+ Sbjct: 809 SYLSRGLYLFQKHEGMEVCLFTIFAQEFGDDCELAANRRAVYIAYLDSVRYLKPASARTAAYHLIMLAYFDYVRRHGFSRVHI 891 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9309 ID=mRNA_9309|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_38:479969..480220- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TACAGTGTCACCAGCAAGGCCCTGAGCCTGTTACAGCTCATCGACGACACback to top protein sequence of jgi.p|Trimin1|144362 >Trimin1|144362|gw1.38.105.1 ID=Trimin1|144362|gw1.38.105.1|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMback to top mRNA from alignment at Contig_38:479969..480220- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9309 ID=mRNA_9309|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_38:479969..480220- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_38:479969..480220- >mRNA_9309 ID=mRNA_9309|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_38:479969..480220- (Tribonema minus UTEX_B_3156 )back to top |