mRNA_9309 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144362
Unique NamemRNA_9309
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A836CDG1_9STRA (CBP/p300-type HAT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.910e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL
Sbjct:    1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 84          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A836CDY7_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.960e-30
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            TSKALSL QLID   VMS +V+AH+YGH+ A AC+ GRVYVSYLDS+PFLQPYSS SAAYQM LV YFDWVR RGF   HL
Sbjct:   89 TSKALSLFQLIDGAWVMSFMVYAHEYGHD-APACNRGRVYVSYLDSVPFLQPYSSRSAAYQMKLVAYFDWVRRRGFGTVHL 168          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A835YPS5_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.790e-21
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            TSKAL L QLID   VMS +++ ++YG + A AC+ GRVY+SYLDS+P++QPY+  S  Y+ +L  YFDWVR RGFS  HL
Sbjct:   67 TSKALCLFQLIDGAWVMSFMLYTYEYGDD-APACNRGRVYLSYLDSVPYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHL 146          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A835YQL1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.110e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            TSKAL L QLI+   VMS ++++++YG + + AC+ GRVY+SYLDS+ ++QPY+  S  Y+ +L  YFDWVR RGFS  HL
Sbjct:   67 TSKALCLFQLINGAWVMSLMLYSYEYGDD-SPACNRGRVYLSYLDSVTYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHL 146          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A836CF44_9STRA (Histone acetyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF44_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.720e-10
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 TSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            T+K + + Q +D   V+  ++ AH+YG + A   + GRVY+SYLDS+PF+ P  + +A +Q +L  Y D  R RGF+ AHL
Sbjct:  123 TAKTIGVFQELDGVWVLFFVLMAHEYGAD-APLANRGRVYISYLDSVPFMWPCHARTALFQGVLHAYLDCSRRRGFTKAHL 202          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.730e-8
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   13 SKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            SKALS+ Q +D   V    ++  +YG + A   +  R Y+SYLDS+ + +P    +A Y  +LV Y DW+R RGF AAH+
Sbjct: 1444 SKALSMFQRVDGVEVCLFSMYVQEYGAD-APYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHI 1522          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: A0A7S1Y085_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y085_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.140e-8
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            + V SK + L Q ID   V+   ++ ++YG       + GRVY+SYLDS+ +LQP    +  Y  +L  Y +WVR RGF  AH+
Sbjct:  362 FPVRSKCIVLFQKIDGVDVVLFAMYVYEYGMR-CPEPNRGRVYISYLDSVHYLQPRQYRTEVYHEILASYLEWVRVRGFHTAHI 444          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: B8C9A0_THAPS (Histone acetyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9A0_THAPS)

HSP 1 Score: 56.2 bits (134), Expect = 2.800e-7
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            + VTSK + L Q I    V+   ++ ++YG +  +A +  RVY+SYLDS+ +L+P S  +  YQ ++V Y  + R RGF  AH+
Sbjct:  381 FPVTSKCILLFQKIHGVDVLLFGMYVYEYG-DKCAAPNRRRVYISYLDSVQYLEPSSYRTTTYQSIIVEYLRYARMRGFHTAHI 463          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: G4ZB91_PHYSP (Histone acetyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZB91_PHYSP)

HSP 1 Score: 55.5 bits (132), Expect = 5.290e-7
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 SVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            S  S+ L L Q  +   V    ++A ++G +     +   VY++YLDS+ +L+P S+ +AAY ++L+ YFD+VR  GFS  H+
Sbjct:  747 SYLSRGLYLFQKHEGMEVCLFTIYAQEFGDDCELEANRRAVYIAYLDSVRYLKPASARTAAYHLILLAYFDYVRRHGFSRVHI 829          
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Match: H3H0Z0_PHYRM (Histone acetyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0Z0_PHYRM)

HSP 1 Score: 55.5 bits (132), Expect = 5.300e-7
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 SVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSMPFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL 252
            S  S+ L L Q  +   V    + A ++G +   A +   VY++YLDS+ +L+P S+ +AAY ++++ YFD+VR  GFS  H+
Sbjct:  809 SYLSRGLYLFQKHEGMEVCLFTIFAQEFGDDCELAANRRAVYIAYLDSVRYLKPASARTAAYHLIMLAYFDYVRRHGFSRVHI 891          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144362 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDG1_9STRA2.910e-54100.00CBP/p300-type HAT domain-containing protein (Fragm... [more]
A0A836CDY7_9STRA8.960e-3074.07Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835YPS5_9STRA1.790e-2156.79Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835YQL1_9STRA3.110e-1953.09Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A836CF44_9STRA8.720e-1041.98Histone acetyltransferase (Fragment) n=2 Tax=Tribo... [more]
A0A6H5L4V8_9PHAE1.730e-841.25Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A7S1Y085_9STRA4.140e-839.29Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]
B8C9A0_THAPS2.800e-738.10Histone acetyltransferase n=1 Tax=Thalassiosira ps... [more]
G4ZB91_PHYSP5.290e-736.14Histone acetyltransferase n=1 Tax=Phytophthora soj... [more]
H3H0Z0_PHYRM5.300e-736.14Histone acetyltransferase n=1 Tax=Phytophthora ram... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:479969..480220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144362|gw1.38.105.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
DescriptionHistone acetylation protein
COG categoryK
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota,3Q7GA@4776|Peronosporales
Evalue1.84e-08
Seed ortholog164328.Phyra77146
Hectar predicted targeting categoryother localisation
TranscriptId144684
TrackFilteredModels1
ProteinId144362
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144362gene_9309Tribonema minus UTEX_B_3156 geneContig_38 479969..480220 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9309_1exon_9309_1Tribonema minus UTEX_B_3156 exonContig_38 479969..480220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9309CDS_9309Tribonema minus UTEX_B_3156 CDSContig_38 479969..480220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144362Trimin1|144362|gw1.38.105.1Tribonema minus UTEX_B_3156 polypeptideContig_38 479969..480220 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9309 ID=mRNA_9309|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_38:479969..480220- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACAGTGTCACCAGCAAGGCCCTGAGCCTGTTACAGCTCATCGACGACAC
TCTGGTCATGAGCTCCATTGTGCATGCACATGATTATGGCCACAATCATG
CATCAGCCTGCAGCCATGGGCGTGTGTACGTGTCGTACCTCGACAGCATG
CCTTTCTTACAGCCCTACAGCAGCTGCTCAGCAGCATACCAGATGATGCT
GGTTGTGTACTTCGACTGGGTGAGATGGCGGGGGTTCAGCGCCGCGCACC
TC
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protein sequence of jgi.p|Trimin1|144362

>Trimin1|144362|gw1.38.105.1 ID=Trimin1|144362|gw1.38.105.1|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp
YSVTSKALSLLQLIDDTLVMSSIVHAHDYGHNHASACSHGRVYVSYLDSM
PFLQPYSSCSAAYQMMLVVYFDWVRWRGFSAAHL
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mRNA from alignment at Contig_38:479969..480220-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9309 ID=mRNA_9309|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_38:479969..480220- (Tribonema minus UTEX_B_3156 )
TACAGTGTCACCAGCAAGGCCCTGAGCCTGTTACAGCTCATCGACGACAC TCTGGTCATGAGCTCCATTGTGCATGCACATGATTATGGCCACAATCATG CATCAGCCTGCAGCCATGGGCGTGTGTACGTGTCGTACCTCGACAGCATG CCTTTCTTACAGCCCTACAGCAGCTGCTCAGCAGCATACCAGATGATGCT GGTTGTGTACTTCGACTGGGTGAGATGGCGGGGGTTCAGCGCCGCGCACC TC
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Coding sequence (CDS) from alignment at Contig_38:479969..480220-

>mRNA_9309 ID=mRNA_9309|Name=jgi.p|Trimin1|144362|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_38:479969..480220- (Tribonema minus UTEX_B_3156 )
TACAGTGTCACCAGCAAGGCCCTGAGCCTGTTACAGCTCATCGACGACAC
TCTGGTCATGAGCTCCATTGTGCATGCACATGATTATGGCCACAATCATG
CATCAGCCTGCAGCCATGGGCGTGTGTACGTGTCGTACCTCGACAGCATG
CCTTTCTTACAGCCCTACAGCAGCTGCTCAGCAGCATACCAGATGATGCT
GGTTGTGTACTTCGACTGGGTGAGATGGCGGGGGTTCAGCGCCGCGCACC
TC
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