mRNA_9292 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A835YWY2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY2_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.710e-57 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 Query: 1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG Sbjct: 1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 88
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A835Z6Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 7.850e-20 Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 S+V F+ L A +DD CL L +GT+ MG+ R + I IR YREL I M G +R++ITGTPGIGKSCYA YW+W L +AG Sbjct: 81 SSVVTFWRALSRASDDDDCLALKDGTWFMGDYVRGNRIYIRSCYRELMDTIK-AMVTSGTRRVVITGTPGIGKSCYALYWLWHLRRAG 167
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A836CIP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP4_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.080e-19 Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1 Query: 1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 + + EF+ L +A E+D L+L +GT+ MG+ R + I +R YR+L +I +A+ G +R+++TGTPGIGKS YAFYW+W L +AG Sbjct: 148 AGIVEFWHALSEATEEDGWLILVDGTFFMGDPTRGTCIYVRSCYRDLTEHIEQLLAI-GTRRVVVTGTPGIGKSVYAFYWLWRLCQAG 234
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A836CEN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN6_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.510e-17 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 16 FFLRLQDAKED-DACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 F+ L A D D CL LP GT+ MG ++ S+I IR+ Y L I +A + +R++ITGTPGIGK+CYAFYW+W L + G Sbjct: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTG 84
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A836CG71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG71_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1 Query: 7 VEEFFLRLQDAKEDD-ACLVLPEGTYIMGEQ-ERNSSILIRETYRELQTYITH--EMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 V+EF+ L DA+ED+ L L EGT+ G + +R +I +R+ Y++LQ + E + A++I+ITG PG GKS +A YW+W L AG Sbjct: 202 VQEFWRCLVDAREDEHGFLRLTEGTHFPGNKNQRVKAIYVRQWYKDLQEEVLSMTEPGPQHARKILITGRPGTGKSLFALYWLWLLKLAG 291
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A7S0WMA9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WMA9_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 1.430e-9 Identity = 31/89 (34.83%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 1 SAVEEFFLRLQDAK-EDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 +A+ EF+ +L+DA +D L L TY +G+ S + +RE YR++ + H + +G +++ITG+PGIGKS + +Y +W + + G Sbjct: 24 AAINEFWGKLRDAGISEDGFLQLAPDTYFLGDPLNGSCLFVREPYRKVVEQVLHLWS-QGITKLVITGSPGIGKSVFGWYLIWVVRQQG 111
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A6H5KCR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR9_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 4.870e-8 Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1 Query: 4 AVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 A+ +F L A D L L +GT+ +GE S + IR Y++L I + +I++TGTPGIGKS + FY M+ L G Sbjct: 20 ALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQG 106
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A7S0WMQ0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WMQ0_9CHLO) HSP 1 Score: 56.6 bits (135), Expect = 1.560e-7 Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 16 FFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMW 246 F+ +L+ A L L GTY +G S +L+R TY + ++ + +G +++ITG+PGIGKS + +Y +W Sbjct: 31 FWDQLKHAVITGGFLQLAPGTYFLGSSINGSCLLVRATYERMTGHMARLLGEEGVTKLVITGSPGIGKSVFGWYLLW 107
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 3.170e-7 Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1 Query: 4 AVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264 A+ +F L A D L L +GT+ +GE S + IR Y++L I + +I++TGTPGIGKS + FY M+ L G Sbjct: 39 ALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQG 125
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A7S4K007_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K007_GUITH) HSP 1 Score: 55.5 bits (132), Expect = 5.640e-7 Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 1 Query: 31 QDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAV-----------KGAKRIIITGTPGIGKSCYAFYWMWTLLKA 261 + K A ++P T++ G+++ + + IRE Y E++ I V K K I+TGTPGIGKSC+A+Y + LL++ Sbjct: 255 RSGKTFSALEIIPLSTFLGGDEDFGNHLFIRECYLEMKRVIAEHFKVDPEMLKTLGPRKSCKPFILTGTPGIGKSCFAYYLLMELLRS 342 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9292 ID=mRNA_9292|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_38:319412..319675- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCAGCTGTGGAAGAGTTCTTCCTTCGCCTACAAGACGCCAAGGAGGATGAback to top protein sequence of jgi.p|Trimin1|136118 >Trimin1|136118|gw1.38.49.1 ID=Trimin1|136118|gw1.38.49.1|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYback to top mRNA from alignment at Contig_38:319412..319675- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9292 ID=mRNA_9292|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_38:319412..319675- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_38:319412..319675- >mRNA_9292 ID=mRNA_9292|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_38:319412..319675- (Tribonema minus UTEX_B_3156 )back to top |