mRNA_9292 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136118
Unique NamemRNA_9292
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A835YWY2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.710e-57
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG
Sbjct:    1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 88          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A835Z6Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.850e-20
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            S+V  F+  L  A +DD CL L +GT+ MG+  R + I IR  YREL   I   M   G +R++ITGTPGIGKSCYA YW+W L +AG
Sbjct:   81 SSVVTFWRALSRASDDDDCLALKDGTWFMGDYVRGNRIYIRSCYRELMDTIK-AMVTSGTRRVVITGTPGIGKSCYALYWLWHLRRAG 167          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A836CIP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.080e-19
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            + + EF+  L +A E+D  L+L +GT+ MG+  R + I +R  YR+L  +I   +A+ G +R+++TGTPGIGKS YAFYW+W L +AG
Sbjct:  148 AGIVEFWHALSEATEEDGWLILVDGTFFMGDPTRGTCIYVRSCYRDLTEHIEQLLAI-GTRRVVVTGTPGIGKSVYAFYWLWRLCQAG 234          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A836CEN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.510e-17
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   16 FFLRLQDAKED-DACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            F+  L  A  D D CL LP GT+ MG ++  S+I IR+ Y  L   I   +A +  +R++ITGTPGIGK+CYAFYW+W L + G
Sbjct:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTG 84          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A836CG71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG71_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    7 VEEFFLRLQDAKEDD-ACLVLPEGTYIMGEQ-ERNSSILIRETYRELQTYITH--EMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            V+EF+  L DA+ED+   L L EGT+  G + +R  +I +R+ Y++LQ  +    E   + A++I+ITG PG GKS +A YW+W L  AG
Sbjct:  202 VQEFWRCLVDAREDEHGFLRLTEGTHFPGNKNQRVKAIYVRQWYKDLQEEVLSMTEPGPQHARKILITGRPGTGKSLFALYWLWLLKLAG 291          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A7S0WMA9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WMA9_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 1.430e-9
Identity = 31/89 (34.83%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 SAVEEFFLRLQDAK-EDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            +A+ EF+ +L+DA   +D  L L   TY +G+    S + +RE YR++   + H  + +G  +++ITG+PGIGKS + +Y +W + + G
Sbjct:   24 AAINEFWGKLRDAGISEDGFLQLAPDTYFLGDPLNGSCLFVREPYRKVVEQVLHLWS-QGITKLVITGSPGIGKSVFGWYLIWVVRQQG 111          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A6H5KCR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.870e-8
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    4 AVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            A+ +F   L  A   D  L L +GT+ +GE    S + IR  Y++L   I   +      +I++TGTPGIGKS + FY M+ L   G
Sbjct:   20 ALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQG 106          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A7S0WMQ0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WMQ0_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.560e-7
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   16 FFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMW 246
            F+ +L+ A      L L  GTY +G     S +L+R TY  +  ++   +  +G  +++ITG+PGIGKS + +Y +W
Sbjct:   31 FWDQLKHAVITGGFLQLAPGTYFLGSSINGSCLLVRATYERMTGHMARLLGEEGVTKLVITGSPGIGKSVFGWYLLW 107          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.170e-7
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    4 AVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG 264
            A+ +F   L  A   D  L L +GT+ +GE    S + IR  Y++L   I   +      +I++TGTPGIGKS + FY M+ L   G
Sbjct:   39 ALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQG 125          
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Match: A0A7S4K007_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K007_GUITH)

HSP 1 Score: 55.5 bits (132), Expect = 5.640e-7
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   31 QDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTYITHEMAV-----------KGAKRIIITGTPGIGKSCYAFYWMWTLLKA 261
            +  K   A  ++P  T++ G+++  + + IRE Y E++  I     V           K  K  I+TGTPGIGKSC+A+Y +  LL++
Sbjct:  255 RSGKTFSALEIIPLSTFLGGDEDFGNHLFIRECYLEMKRVIAEHFKVDPEMLKTLGPRKSCKPFILTGTPGIGKSCFAYYLLMELLRS 342          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136118 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A835YWY2_9STRA1.710e-57100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6Q5_9STRA7.850e-2051.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIP4_9STRA5.080e-1945.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEN6_9STRA3.510e-1747.62Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CG71_9STRA1.820e-1042.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0WMA9_9CHLO1.430e-934.83Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6H5KCR9_9PHAE4.870e-836.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S0WMQ0_9CHLO1.560e-733.77Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6H5KFB9_9PHAE3.170e-736.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4K007_GUITH5.640e-732.95Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:319412..319675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136118|gw1.38.49.1
BRITEko00000,ko00001,ko03029
KEGG Pathwayko04714,map04714
KEGG koko:K18164
DescriptionArginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)
COG categoryH
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG1565@1|root,KOG2901@2759|Eukaryota,37KEB@33090|Viridiplantae,34GYR@3041|Chlorophyta
Evalue1.86e-07
Seed ortholog248742.XP_005643168.1
Hectar predicted targeting categoryother localisation
TranscriptId136440
TrackFilteredModels1
ProteinId136118
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136118gene_9292Tribonema minus UTEX_B_3156 geneContig_38 319412..319675 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9292_1exon_9292_1Tribonema minus UTEX_B_3156 exonContig_38 319412..319675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9292CDS_9292Tribonema minus UTEX_B_3156 CDSContig_38 319412..319675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136118Trimin1|136118|gw1.38.49.1Tribonema minus UTEX_B_3156 polypeptideContig_38 319412..319675 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9292 ID=mRNA_9292|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_38:319412..319675- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCAGCTGTGGAAGAGTTCTTCCTTCGCCTACAAGACGCCAAGGAGGATGA
TGCCTGCCTTGTCCTACCTGAGGGTACCTACATCATGGGAGAGCAGGAAC
GGAACAGTAGTATCCTCATCAGGGAGACCTACCGTGAGCTGCAGACGTAC
ATCACCCATGAGATGGCGGTCAAGGGCGCCAAGCGCATCATCATCACAGG
CACCCCCGGCATCGGCAAGTCCTGCTATGCGTTCTACTGGATGTGGACGC
TGCTCAAAGCGGGC
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protein sequence of jgi.p|Trimin1|136118

>Trimin1|136118|gw1.38.49.1 ID=Trimin1|136118|gw1.38.49.1|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp
SAVEEFFLRLQDAKEDDACLVLPEGTYIMGEQERNSSILIRETYRELQTY
ITHEMAVKGAKRIIITGTPGIGKSCYAFYWMWTLLKAG
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mRNA from alignment at Contig_38:319412..319675-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9292 ID=mRNA_9292|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_38:319412..319675- (Tribonema minus UTEX_B_3156 )
TCAGCTGTGGAAGAGTTCTTCCTTCGCCTACAAGACGCCAAGGAGGATGA TGCCTGCCTTGTCCTACCTGAGGGTACCTACATCATGGGAGAGCAGGAAC GGAACAGTAGTATCCTCATCAGGGAGACCTACCGTGAGCTGCAGACGTAC ATCACCCATGAGATGGCGGTCAAGGGCGCCAAGCGCATCATCATCACAGG CACCCCCGGCATCGGCAAGTCCTGCTATGCGTTCTACTGGATGTGGACGC TGCTCAAAGCGGGC
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Coding sequence (CDS) from alignment at Contig_38:319412..319675-

>mRNA_9292 ID=mRNA_9292|Name=jgi.p|Trimin1|136118|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_38:319412..319675- (Tribonema minus UTEX_B_3156 )
TCAGCTGTGGAAGAGTTCTTCCTTCGCCTACAAGACGCCAAGGAGGATGA
TGCCTGCCTTGTCCTACCTGAGGGTACCTACATCATGGGAGAGCAGGAAC
GGAACAGTAGTATCCTCATCAGGGAGACCTACCGTGAGCTGCAGACGTAC
ATCACCCATGAGATGGCGGTCAAGGGCGCCAAGCGCATCATCATCACAGG
CACCCCCGGCATCGGCAAGTCCTGCTATGCGTTCTACTGGATGTGGACGC
TGCTCAAAGCGGGC
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