mRNA_9279 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349171
Unique Name	mRNA_9279
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|349171 vs. uniprot
Match: A0A836CCR2_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR2_9STRA)

HSP 1 Score: 440 bits (1132), Expect = 2.060e-155
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1

Query:    1 MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY 690
            MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY
Sbjct:    1 MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY 230

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349171 vs. uniprot

BLAST of jgi.p|Trimin1|349171 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CCR2_9STRA	2.060e-155	100.00	Non-structural maintenance of chromosomes element ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_38	contig	Contig_38:208033..211126 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349171\|estExt_Genemark1.C_Ctg_380017
Description	Nse1 non-SMC component of SMC5-6 complex
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2EYQU@1\|root,2T06J@2759\|Eukaryota
Evalue	5.77e-21
Seed ortholog	2880.D8LSK7
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Non-structural maintenance of chromosomes element 1
Ec32 ortholog	Ec-09_001990.1
TranscriptId	349493
Track	FilteredModels1
ProteinId	349171

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349171	gene_9279	Tribonema minus UTEX_B_3156	gene	Contig_38 208033..211126 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349171	Trimin1\|349171\|estExt_Genemark1.C_Ctg_380017	Tribonema minus UTEX_B_3156	polypeptide	Contig_38 208124..211126 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9279_4	exon_9279_4	Tribonema minus UTEX_B_3156	exon	Contig_38 208033..208234 -
exon_9279_3	exon_9279_3	Tribonema minus UTEX_B_3156	exon	Contig_38 209122..209352 -
exon_9279_2	exon_9279_2	Tribonema minus UTEX_B_3156	exon	Contig_38 210083..210280 -
exon_9279_1	exon_9279_1	Tribonema minus UTEX_B_3156	exon	Contig_38 210974..211126 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9279	UTR3_9279	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_38 208033..208123 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9279	CDS_9279	Tribonema minus UTEX_B_3156	CDS	Contig_38 210974..211126 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_38:208033..211126-
coding sequence from alignment at Contig_38:208033..211126-

spliced messenger RNA

>mRNA_9279 ID=mRNA_9279|Name=jgi.p|Trimin1|349171|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=784bp|location=Sequence derived from alignment at Contig_38:208033..211126- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGGGCGAAGCGGAAGGCTTCCCAGCAGCCTGAGGAGGAAGAGGA
GGTTAATGATAATGAGGAGGCTTCACAGGAGGCGACGCCGACTCAGCGAC
ATAACGGAGAGGTGCTGCCGGATGCTGTGAAGGCTTTCCTGCAGATCATC
ATGTCGCGTGGCGCCCTGACACAAGCACAAGCTGAGGAAGCGTTAGGCAC
CGCCATTCAAAGCTTTGGCGGTGCAGCGCTCAACCTGGATGCGGTGCTGC
GGAGGGCTAATGCCCAGCTTAAGCTCATGGACCTAGAGATCAAGGGGACT
CGGCTACAGGGAGGGGGTGGCCATGTCATCTACTATGCCATGGCGAATAT
GAATGCGGATGAAATCTCCAAAAAGCACGGAACCACAATGAGCAGCTGGA
GGCTGGATGCATTCAACACCATTCTTGATGCTTTCAAGCCCGAAGAAGGC
GCCACTACGGTCGCAACTGGTGGCTATCCTGTCTTGTCGTATGACCACAT
GCGGACTCTGAAACCCAAGACAGCCACGGAGGTGGATTACGCCACGTTTG
TGCAGAAGCTTGCCAACGACATGTGGCTCAAGATGGAAGACAAGAGGGGC
AAGTCCTACTCGCTCGGGCCACGCACGTACATTGAGCTCAGGATGCTCCT
GGAAGCACGCGCCATTGCCTGCCCGCAACTGCTCCTCTATTAGGGGCATG
GACATGCATGCAAAGACATGACATGAGACATGACAAGGCCTCACAATCCC
CCATACAGTGGCACAAATGTATACTACAGTACTG

protein sequence of jgi.p|Trimin1|349171

>Trimin1|349171|estExt_Genemark1.C_Ctg_380017 ID=Trimin1|349171|estExt_Genemark1.C_Ctg_380017|Name=jgi.p|Trimin1|349171|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQII
MSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGT
RLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEG
ATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRG
KSYSLGPRTYIELRMLLEARAIACPQLLLY*

mRNA from alignment at Contig_38:208033..211126-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9279 ID=mRNA_9279|Name=jgi.p|Trimin1|349171|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3094bp|location=Sequence derived from alignment at Contig_38:208033..211126- (Tribonema minus UTEX_B_3156 )
ATGGCTCGGGCGAAGCGGAAGGCTTCCCAGCAGCCTGAGGAGGAAGAGGA
GGTTAATGATAATGAGGAGGCTTCACAGGAGGCGACGCCGACTCAGCGAC
ATAACGGAGAGGTGCTGCCGGATGCTGTGAAGGCTTTCCTGCAGATCATC
ATGGTCAGTGTACAATTCAAGTCTTGATCAGGCGGTGCACTGCTCGCGCG
AACAATGCTGACTGATTGCACCCACTCCTCAATATTGACAGTGTTTTGTG
TAGTATAGATAGCTCGATGTGCGCCTGCATGCGAGGTGCTTGTGCGACAG
CTTGTCCATCAGGAAGCCAGAAAAAGTCGTGTCAAAGGAGCTGTCTGGGA
GGCAGTACGGTATAGTGAGCTTGAGGCTTTATTCCTGTTTTGTCATTTTT
TCTCATGAAGACATCATCACCTTGGGATCCTGTGTCATTCTGACCGGCAT
TGGAGAGCTGAGCACTTGCAGGCAGGCTCCGAATGAGAGCTGGGCATTCA
TTGTTGAAGTATGAAAAGTTCATCACTTTTTGAAAAACACTTCTCATGTC
TTGCAACAATCAGCTTCACCCTAAAGGCTCGATGCCTACATATGTTCCGC
AACGTTGCTTCAAGGAATGCCGTTGTTTCACTGTGGCGTGCATCGAGGTG
GTGCTTCTGCGTACCATGTACTGGCTTCATGGAACATCATATTCACAAAA
GCATATGCAAAGTGAGGCTTTGGCTGGCAAATCTTGGCCATTCCTAAGCT
GCGCACTCATGTGCGCTATTAGCTGTTGCGGCAACTGCTGTTCATTCATG
GTCTCATTTTGCTGTCACCACACACTTGATGCCTTCGCCACTGCAGTCGC
GTGGCGCCCTGACACAAGCACAAGCTGAGGAAGCGTTAGGCACCGCCATT
CAAAGCTTTGGCGGTGCAGCGCTCAACCTGGATGCGGTGCTGCGGAGGGC
TAATGCCCAGCTTAAGCTCATGGACCTAGAGATCAAGGGGACTCGGCTAC
AGGGAGGGGGTGGCCATGTCATCTACTATGCCATGGCGAATATGGTACGT
CTTGACCAGCACCAGACGCCTTCTGGCACCATTGCGCTTACAGCAGACAG
TCTCTGCCGGGTGTCTCGTCAAACTACAGGTCGAAGCATGCCAGTGTGTA
CACATGTGGTTGACGAGTTCTTCGAAGTATGCAACACGAGTGCATGCAGA
TCAGTTGCATGGAGCCAAGATACCTGCTTCGCTGCAAGTTGAAATTTCGC
ACAGCAACAGGCATGCCCACTCCAGCAATTACTCCAGCATCAGGTGCCAT
GTTGGGTTAAGACAGATAGTCCGTGTCAGCAATACGTCATACTTCTTCAA
GTAGATGGCTCATTTCATGGACGGTCGGGTGTGTGTGCATACTATTGCAT
CCGAGCGTCCATGTGCTCAGCACAGGCCACAGGGTCTTCTGAGGCAGTCA
AAAATTGTGAAAGCTGTATGTGCACATGTAGCCTGTATGACATCATGTGC
CATGTGACACTGCCCTCACCACAGGTCTGACGCAGCTGCTTCTAGAGTGC
CCTTGATCTCAAGAACTTGCGAGTGCACAAATAATAAACTGCTGCCTGCT
TTCTATATAGACTAGAAGTATGCACTTGTGTCTTACTTGCAAGCAACATA
TGCAGATGTGTCATTCATGGCAGGTGTCCCACCCAACTCGACTTCAACAA
GTCAACTTCAACAATCACCTCCATGGTGCGACGCGCGTGTTTCCTCACTC
TTTTGTACCCAATCCCTTCGTCAGAATGCGGATGAAATCTCCAAAAAGCA
CGGAACCACAATGAGCAGCTGGAGGCTGGATGCATTCAACACCATTCTTG
ATGCTTTCAAGCCCGAAGAAGGCGCCACTACGGTCGCAACTGGTGGCTAT
CCTGTCTTGTCGTATGACCACATGCGGACTCTGAAACCCAAGACAGCCAC
GGAGGTGGATTACGCCACGTTTGTGCAGAAGCTTGCCAACGACATGTGGC
TCAAGGTGCGCATCTGCTTGTAAGCACATGTCAGGCTGAACACGTTATCA
TCAGTACGCAAATTTGTCAAAGGAGAGTCACGAAGGCATGGGAGCCTTGT
GGATCAATACTGTCCGCACATGACTGCAGTACACTGACAGGCAGTATTGC
GCTTCCAACTGGAGCCTGGAGATAGTAGTTTCACTATCAGTGCACATCTC
TAAAGTACATTGCACACATCACAGCAGACATGTACTTCTACTACTGTACA
AGTCTCATACAAGGCAGTGACTCGTTGCATGCCAGCCATAGAAGCACCAG
ACGTACAGGTGGGGTCTCAGGGCTACTGACCATGTATGTACTGCGACCAT
AACCGCAATATGATATTCCTGGCATGCTTCCACGGTCTATGGGTTGTGCA
GTAAGCACATGGCCGCTTGAGTGGTGAAGCGCACGTAGCCCTGGTAACTA
TTTGAGCCCATTAGGATTGAGGGGAAGTTGTGTACGCAGTGTGACGGAAA
TGCAAGGCCTCACCACATGACACATGGTGTCTGAGCTTGACAGCGATTTT
AGATAGAGTGTCAGCTAGCACCACCAGCACCGGCATGTCCGTTGTGTCCA
CATGTGTGACGGGCAGTCACTCGCTGTGTTTGGAAAATTGTACACGCCTG
TGCCTGCTTCTTGTTATGCACGATATGGATGACAGGTGAAAACAGTATCC
TGCCAGCATCCCAGGACCCGTTTTGAACGCGTATGAGCACATATGCTGTG
CAAGTCTTTTTCCAAAATCAGCCGGCTTTGACATCAACCTGCATGGATCA
CTGATAAATTCCTCCGTACTTGTGTGCATGACTCGGAGTTTTAAAAAAAA
TAAAATACGCTTATGTGTACGTGTATGTGTGTGTCGTGTCAGATGGAAGA
CAAGAGGGGCAAGTCCTACTCGCTCGGGCCACGCACGTACATTGAGCTCA
GGATGCTCCTGGAAGCACGCGCCATTGCCTGCCCGCAACTGCTCCTCTAT
TAGGGGCATGGACATGCATGCAAAGACATGACATGAGACATGACAAGGCC
TCACAATCCCCCATACAGTGGCACAAATGTATACTACAGTACTG

Coding sequence (CDS) from alignment at Contig_38:208033..211126-

>mRNA_9279 ID=mRNA_9279|Name=jgi.p|Trimin1|349171|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_38:208033..211126- (Tribonema minus UTEX_B_3156 )
ATGGCTCGGGCGAAGCGGAAGGCTTCCCAGCAGCCTGAGGAGGAAGAGGA
GGTTAATGATAATGAGGAGGCTTCACAGGAGGCGACGCCGACTCAGCGAC
ATAACGGAGAGGTGCTGCCGGATGCTGTGAAGGCTTTCCTGCAGATCATC
ATGTCGCGTGGCGCCCTGACACAAGCACAAGCTGAGGAAGCGTTAGGCAC
CGCCATTCAAAGCTTTGGCGGTGCAGCGCTCAACCTGGATGCGGTGCTGC
GGAGGGCTAATGCCCAGCTTAAGCTCATGGACCTAGAGATCAAGGGGACT
CGGCTACAGGGAGGGGGTGGCCATGTCATCTACTATGCCATGGCGAATAT
GAATGCGGATGAAATCTCCAAAAAGCACGGAACCACAATGAGCAGCTGGA
GGCTGGATGCATTCAACACCATTCTTGATGCTTTCAAGCCCGAAGAAGGC
GCCACTACGGTCGCAACTGGTGGCTATCCTGTCTTGTCGTATGACCACAT
GCGGACTCTGAAACCCAAGACAGCCACGGAGGTGGATTACGCCACGTTTG
TGCAGAAGCTTGCCAACGACATGTGGCTCAAGATGGAAGACAAGAGGGGC
AAGTCCTACTCGCTCGGGCCACGCACGTACATTGAGCTCAGGATGCTCCT
GGAAGCACGCGCCATTGCCTGCCCGCAACTGCTCCTCTATTAG