Trimin1|349171|estExt_Genemark1.C_Ctg_380017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349171
Unique NameTrimin1|349171|estExt_Genemark1.C_Ctg_380017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length231
Homology
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BLAST of jgi.p|Trimin1|349171 vs. uniprot
Match: A0A836CCR2_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR2_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 1.770e-155
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0 
Query:    1 MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY 230
            MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY
Sbjct:    1 MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQIIMSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGTRLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEGATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRGKSYSLGPRTYIELRMLLEARAIACPQLLLY 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349171 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CCR2_9STRA1.770e-155100.00Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 120..221
e-value: 1.1E-6
score: 30.6
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 44..213
e-value: 9.2E-13
score: 48.5
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 39..219
NoneNo IPR availableGENE3D3.90.1150.220coord: 38..117
e-value: 1.3E-8
score: 36.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR20973:SF0NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 HOMOLOGcoord: 39..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:208124..211126 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349171mRNA_9279Tribonema minus UTEX_B_3156 mRNAContig_38 208033..211126 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349171|estExt_Genemark1.C_Ctg_380017 ID=Trimin1|349171|estExt_Genemark1.C_Ctg_380017|Name=jgi.p|Trimin1|349171|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MARAKRKASQQPEEEEEVNDNEEASQEATPTQRHNGEVLPDAVKAFLQII
MSRGALTQAQAEEALGTAIQSFGGAALNLDAVLRRANAQLKLMDLEIKGT
RLQGGGGHVIYYAMANMNADEISKKHGTTMSSWRLDAFNTILDAFKPEEG
ATTVATGGYPVLSYDHMRTLKPKTATEVDYATFVQKLANDMWLKMEDKRG
KSYSLGPRTYIELRMLLEARAIACPQLLLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR011513Nse1