mRNA_9139 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349501
Unique NamemRNA_9139
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835Z1P0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P0_9STRA)

HSP 1 Score: 1753 bits (4539), Expect = 0.000e+0
Identity = 890/890 (100.00%), Postives = 890/890 (100.00%), Query Frame = 1
Query:    1 MQMRRERNPPYSLRRDGAPEQDLNPSFLRGAFSLLLKLSARPGRRSLAHHAFYGDHLLKNVVVEHMEYKFRVVGESMRGRSDHECMQPYVRRETQAAFFDFVKLQDPAANNPDFNLHAKADKRNVGPEWVHYDLGPGNDLYAIAEVIDADGRAGYHLHILDAATVYSTWKYQGRVMLGPVVRDSKELRWDQVLDNMCGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVADKTVDVSPGSLAPTLICDRQDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTADTAGKYVVLPLRGDVAAILAIDITEPALGHTDALHAGGVARLVAGTIADYDNTAEAGNPVHFTATAALLKLGVMANSGNVAGAIYAFIVTIIAIIATYASRKDTAHVLSKALPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGNESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCNVALACVCGALMVFAIARQYRAGSFTKGKVAGVIEDVRRPRSYTHDAPALSGAERSSASLNFANTLSMKVHELPAPVRMHAPLGGGDSVA 2670
            MQMRRERNPPYSLRRDGAPEQDLNPSFLRGAFSLLLKLSARPGRRSLAHHAFYGDHLLKNVVVEHMEYKFRVVGESMRGRSDHECMQPYVRRETQAAFFDFVKLQDPAANNPDFNLHAKADKRNVGPEWVHYDLGPGNDLYAIAEVIDADGRAGYHLHILDAATVYSTWKYQGRVMLGPVVRDSKELRWDQVLDNMCGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVADKTVDVSPGSLAPTLICDRQDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTADTAGKYVVLPLRGDVAAILAIDITEPALGHTDALHAGGVARLVAGTIADYDNTAEAGNPVHFTATAALLKLGVMANSGNVAGAIYAFIVTIIAIIATYASRKDTAHVLSKALPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGNESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCNVALACVCGALMVFAIARQYRAGSFTKGKVAGVIEDVRRPRSYTHDAPALSGAERSSASLNFANTLSMKVHELPAPVRMHAPLGGGDSVA
Sbjct:    1 MQMRRERNPPYSLRRDGAPEQDLNPSFLRGAFSLLLKLSARPGRRSLAHHAFYGDHLLKNVVVEHMEYKFRVVGESMRGRSDHECMQPYVRRETQAAFFDFVKLQDPAANNPDFNLHAKADKRNVGPEWVHYDLGPGNDLYAIAEVIDADGRAGYHLHILDAATVYSTWKYQGRVMLGPVVRDSKELRWDQVLDNMCGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVADKTVDVSPGSLAPTLICDRQDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTADTAGKYVVLPLRGDVAAILAIDITEPALGHTDALHAGGVARLVAGTIADYDNTAEAGNPVHFTATAALLKLGVMANSGNVAGAIYAFIVTIIAIIATYASRKDTAHVLSKALPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGNESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCNVALACVCGALMVFAIARQYRAGSFTKGKVAGVIEDVRRPRSYTHDAPALSGAERSSASLNFANTLSMKVHELPAPVRMHAPLGGGDSVA 890          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835YRT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT5_9STRA)

HSP 1 Score: 505 bits (1301), Expect = 3.420e-158
Identity = 329/774 (42.51%), Postives = 418/774 (54.01%), Query Frame = 1
Query:  535 PVVRDSKELRWDQVLDNMCGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVADKTV---DVSPGSLAPTLICDR-QDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTA--DTAGKYVVLPLRGDVAAILAIDITEPALGHTDALHAGGVARLVA-GTIADYDNTAEAGNP-VHFTATAALLKL----------------------------------------------------------------------------------------------------------------------------GVMANSGNVAGAIYAFIVTIIAIIATYASRKDTAHVLSKALPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGN--ESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCNVALACVCGALMVFAIAR 2454
            P   D  ++ WD   D  CG A+ SGQAVGACGL    Y  GSG ALL  SRF+S++P + ALSTD+NV G+LAD++ITN   T + D + AL G AQVD FLC D  C VMADLMY+APT+P  D   NAITIATAY+RFPNSK G+  +Y+PD     L++Y KV S N      A      N Y ++L +VVWSLP       + +  D++   + +  + +A A A    EQW E +PTL  +G  TRLFG+E+L N DWS+LRIGTYEL NGDCV II+FVHEWM+  GWGTSVVC   A P RTYIFDSYFPQA +QWPPT   + G  VF+     A +G W  +G G        VA +T      SP  L+ +++CD  Q  NSET GAG++ CY +T         +TGE P+++PY+  G  A  DT GK+VVLPLRG  A +LA+DITEPAL      H G V  L A GT  DYDN A A  P V+ +A  ALLKL                                                                                                                            G+M  S  VAGA+YA  ++++A+IA YASR+DT H+  K  P   AVALTA+V++FAV+TPALL A  E+DAR SNPSG+   + VTW    A GYG Y+VVA+VSTSYTA Y++AA+ ++WCN+ALA V   L++  + R
Sbjct:  424 PSGSDGNDMTWDGSADGFCGAALISGQAVGACGLSGTRYFGGSGTALLGMSRFRSFAPGAPALSTDRNVAGVLADVIITNNKKTSRVDLAKALQGTAQVDFFLCSDPTCVVMADLMYVAPTAPATDG--NAITIATAYTRFPNSKTGVHGYYIPDSMHGALYDYSKV-SFNTT---EAATGAARNPY-SKLQQVVWSLPVGVAAHPSGTTLDAATAAVEASAKTTAAAAAVA-TEQWFEAMPTLFEVGGATRLFGSEALANIDWSQLRIGTYELTNGDCVTIISFVHEWMDGRGWGTSVVCASGAPPTRTYIFDSYFPQASVQWPPTKD-DAGQYVFEAAAPGARSG-WKAFGTG--------VAGETALDDSASPTLLSLSVLCDDFQFKNSETVGAGNITCYTTTLDLAISQAAHTGEPPYIVPYTRGGADAEVDTGGKHVVLPLRGTFATVLALDITEPALRPAAGRHGGAVGLLTADGTTFDYDNQAAATPPPVNKSAPRALLKLASMATGQVKPLPWLAGDNPDYVPWETYQHSVVTLPRGQVPLLDALDWETEGWGQLEPSPKLVRAPASSGAAMRARMAVSFVDLMSIVPGFTGYERGDVPALVSAMDKIAAGAAQALDAGISLQLGLMDASLTVAGALYALAISVVALIAIYASRRDTLHLFLKVAPPTAAVALTALVSVFAVLTPALLQAKGEVDARGSNPSGDGDSAVVTWQSASASGYGDYQVVAMVSTSYTATYDSAARVIVWCNLALAVVGSLLLMIGMLR 1179          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835ZC60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC60_9STRA)

HSP 1 Score: 164 bits (414), Expect = 5.220e-38
Identity = 127/392 (32.40%), Postives = 173/392 (44.13%), Query Frame = 1
Query:  589 CGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFT-----YNVADKTVDVSPGSLAPTLICDRQ-DGNSETTGAGSVDCYVSTQ 1746
            C   I SGQ V AC LV   Y  GS   LL ASRF+ +S    A STD N  GLLAD  ++    + + D S  +T  AQ+D+FLCGD+ C  MADLMYI      P + A   T+A  YSR  N+ A + + Y+ D AT T        +A+    P A           QL+ V W +                                  +  +W+   PTL N     R   A ++G A+W  +R G Y    G CV +++ VH W +  GWG S  C    AP  TYIFDSYFPQA+L     +P    DIV+++  +++  G  + Y   P    T      +   +   V PG++   + C      N E   AG+ DC    Q
Sbjct:   48 CSDGIQSGQTVHACSLVDAGYVTGSAADLLMASRFKGFSAGKQAWSTDPNTVGLLADYTMSVHATSQRLDASKDITATAQLDLFLCGDDTCKAMADLMYITAAGDAPSTPA---TLAFGYSRLANTLAALPTRYL-DPATITSTLVPDAAAASPVSVPGA-----------QLSTVAWQI----------------------------------EDPEWVANYPTLLNTASLAR---ALAIGGANWDVVRAGRYRDARGVCVTVLSPVHPWFDAMGWGASDEC----APTETYIFDSYFPQAYLDLDSGAPY---DIVYNS-SSSSWDGDAFVYDLAPPARATPWGWRASAFAQQKLVGPGAMGRAVCCPLALFENKEVAAAGAHDCNAGHQ 379          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A836CJG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 9.720e-37
Identity = 123/409 (30.07%), Postives = 171/409 (41.81%), Query Frame = 1
Query:  589 CGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQ-----------VDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYM-PDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYN----------VADKTVDVSPGSLAPTLICDRQ-DGNSETTGAGSVDCYVSTQ 1746
            C   I SGQ V AC LV   Y  GS   LL ASRF+ +S    A STD N  GLLAD   T    + + D S  +T   Q           +D+FLCGD+ C  MADLMYI      P + A   T+   YSR  N+ A + + Y+ P   T+TL              P A  +  ++    QLN VVW +                                  +  +W+   PTL N     R     ++G ADW  +R G Y    G CV +++ VH W +  GWG S  C    AP  TY+FDSYFPQA+L     +P    D+ +++  ++  T ++    A P     +              + +D  PG++   + C      N E   AG+ DC  + Q
Sbjct:   49 CSDGIQSGQTVHACSLVDPGYVTGSAADLLMASRFKGFSAGKQAWSTDPNTVGLLADYTFTLQTTSQRLDASKDITATGQKRLPPXXXXXQLDLFLCGDDTCKAMADLMYITAAGDAPSTPA---TLTFGYSRLANTLAALPTRYLDPAALTSTLV-------------PDAAAASPVSVPGAQLNTVVWQI----------------------------------EDPEWVANYPTLLNAASLARTL---AIGGADWDAVRAGRYRDARGVCVTVLSPVHPWFDAMGWGASDDC----APTETYVFDSYFPQAYLDLDSGAPY---DVAYNSSSSSWDTHAYVYNLAPPARATPWGWRASQLASVVARGELIDAGPGAMGRAVCCPLALFENKEVAAAGAHDCEAAHQ 397          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835YRB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.180e-35
Identity = 73/137 (53.28%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   16 ERNPPYSLRRDGAPEQDLNPSFLRGAFSLLLKLSARPGRRSLAHHAFYGDHLLKNVVVEHMEYKFRVVGESMRGRSDHECMQPYVRRETQAAFFDFVKLQDPAANNPDFNLHAKADKRNVGPEWVHYDLGPGNDLYA 426
            ER  PYSLR  G PE D+N  +LR AF+  L  S   G R++A HAFYGD L+K + VEH+E++FRV GE+  G SDHE +QPYV RE+QAAFFDFV LQ P  NN DF+ H KADK      ++    GPG   +A
Sbjct:    3 ERPTPYSLRVQGGPEHDVNALYLRQAFNDTLSASGTTGHRTMASHAFYGDLLVKLIAVEHLEHRFRVAGETTGGMSDHELLQPYVTRESQAAFFDFVVLQVPQLNNHDFSAHTKADKVEALISYLDLKRGPGLGRHA 139          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835ZIR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 8.460e-34
Identity = 180/684 (26.32%), Postives = 276/684 (40.35%), Query Frame = 1
Query:  628 CGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYF----------PQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVAD--KTVDVSPGSLAPTLICDRQDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTADTAGKYVVLPLRGDVAAIL-AIDITEPALGHTDALHAGGVARLVAGTIADYDNTAEAGNPVHFTATAALL-----KLGVMANSGNVAGAIYAFIVTIIAIIATYASRKDTAHVLSKA-LPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGNESTVT--WLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCNVALACVCGALMVFAIAR-----------QYRAGSFTKGKVAGVIEDVRRP--RSYTHDAPALSGAERSSAS 2577
            C LV + + +GS   +  ASRF  ++ +  A STD N  G+ ADL++  A  T + D    L+G AQVD+FLCGDE C  +ADL Y+   S  P+  A   T+A  Y R P+   G+ + Y+   AT T+                ATD  G +K    + RVV                                     +  +W++ +P+L   G   R    E  GN DW ++R G Y    G CV ++   H W +  GWGT+  CE +    +TYIF ++F          P+     P      +G     T   A+           P+    Y   D  +T D +   L+ T+           T + S+     T       L        + PY   G T     +++V  L    + +  A+  +  + G + + H+G  A                   +  TA  AL      +L     S  VAGA+ AF +T +++IA Y  R++     +K  L    A A+   V +FA+VT    +  +E  AR+SNP G   +    W    A G G YKVV +++ +Y + Y+  A AL W N+A+A +C   +  + AR             R+GS    +     E   RP   +  +DAPA   A+   A+
Sbjct:    2 CTLV-EGFPEGSAADMWMASRFTDFTGNGTAWSTDPNFAGVAADLVMDFAAETARLDARKRLSGTAQVDLFLCGDEPCNTVADLAYVLSASD-PEGQA---TLAFGYQRLPHGLLGVATRYLDPAATRTVLL-------------PATD--GDSKGPRSVGRVV-------------------------------------EFPEWVDNVPSLLAFGPLARTLVVE--GNLDWGRVRAGNYIDSRGVCVTVLTPAHPWFDERGWGTAEDCESS----QTYIFFTFFAPVRASARNHPECRQLPPRVRRCRSGPPPHVTAALASL----------PLRLQAYLDMDHFETADDAGLVLSSTI-----------TSSSSL-----TLWQRYAVLYDAVPLEDVSPYGWRGATWGDQARFMVTDLYCTTSNLFNAVGASANSTGCSPSHHSGIDA-------------------ITLTAQTALQSSVQGQLATADFSLTVAGALIAFSLTTVSLIAGYLGRRELVRFFAKCRLGVTAAKAMAVAVTMFALVTYPATIIIAEEGARASNPDGGAGSAGTFWFAGDASGGGYYKVVGVMTVAYASVYSRTAYALAWINLAVAVICATAICVSAARLPFVTEAQGPLPRRSGSALLTEAVSCGEPKERPPWAAAEYDAPAADEADGDRAA 577          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835YZN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 8.770e-34
Identity = 136/452 (30.09%), Postives = 192/452 (42.48%), Query Frame = 1
Query:  586 MCGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSV---ALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSAN-AAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLN--------NGDIV-FDTVLTAAATGSWYNYGAGPVNTFTYNVADKTVDVSPGSLAPTLICD-RQDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTADTAGKYVVLPLRGDVAAILAIDITE 1899
            +C  AIT+GQAVG C +  D     S   LLAA RF   +P  +   A ST+ ++ G LAD  ++    T + ++S  L G AQ+D+FLC D  C V+ADL++I     TPD  ++  T+A  Y+R P +  G+   ++   AT  L +     S   A +   AT              V+W++                                     QW++  P + + G   R  G     N ++ +LRIG YE   G+CV II FVH WM+  GW  +  C G A   RTY+FDSYFPQA+L WPP    N        N ++  F+    AAA G        P    T N  D            TL CD     N + T A + +CY +  +             W +    +G         +V PL    A+ILA DI+E
Sbjct: 1530 LCQDAITTGQAVGMCAMAGDKLYLKSAADLLAAVRFVESAPPQIGDTATSTEPHMRGFLADYTLSQEQDTKRFNSSKRLKGSAQLDLFLCSDPSCDVVADLVHI----DTPDQDSS-YTLAFGYTRIPGTLMGLPGKHIK--ATDALTSRSIADSGKIAGLADGAT--------------VIWTM----------------------------------DDPQWVDATPVMLSYGAAVRFIGMADAKNWNFERLRIGNYETRAGECVTIITFVHPWMDEQGWRRASACVGAA---RTYVFDSYFPQANLLWPPAQLANAAVSDSYANFEVANFNIAARAAALGQ------APPGANTSNETDNVY-----MYGRTLQCDWTMYTNGQATPADTNNCYAAGHN-------------WGVQIEAEG---------IVTPLVIGNASILAWDISE 1890          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A836CAV9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.630e-31
Identity = 104/305 (34.10%), Postives = 143/305 (46.89%), Query Frame = 1
Query:  589 CGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGS-HYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLG-NADWSKLRIGTY-ELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQA 1494
            C  AI +GQA G C LVS+ Y  G+G  LL A+RFQS++    A STD NVGG+LAD  +T A +  + D   +L G AQVD+FLC D DC V+AD++++  T   P+      T+A  Y+RF +S   + + H   D  T  +F             P A    G+ +     ++V W+L            AD+S                     +W+     +   G   R     +     D   LR G Y E   GDCV +I+F H WM+  GWGTS    G  A  + Y+FDSYF QA
Sbjct:   48 CADAIETGQAAGTCNLVSEGYPLGAGADLLMAARFQSFAAAGGAASTDHNVGGVLADYELTVARSNARLDAQRSLRGTAQVDLFLCSDGDCNVIADVVHVV-TEGKPNG-----TLAMGYARFAHSLVALPAYHIRADSVTPRVF-------------PVAESRRGVAR-----SKVAWAL------------ADASA--------------------EWVSANMVMMPFGALVRFLALSARSAELDLGVLRAGAYTEQQTGDCVIVISFKHPWMDAMGWGTSNCDPGDPAAAKVYVFDSYFAQA 296          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A835ZD65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD65_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.520e-31
Identity = 176/693 (25.40%), Postives = 257/693 (37.09%), Query Frame = 1
Query:  649 YTQGSGPALLAASRFQSYSPDSVAL-----STDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIA--PTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNAD-------------------WSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVADKTVDVSPGSLAPTLICDR-QDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLPYSNDGDTADTAGKYVVLPLRGDV--------AAILAIDITEPALGHTDALHAGGVARL--------------VAGTIADYDNTAEAG-----------------NPVHFTATAALL-----------------------------------------KLGVMANSGNVAGAIYAFIVTIIAIIATYASRKDTAHVLSKA-LPSAVAVALTAMVNIFAVVTPALLLAWSELDARSSNPSGNESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWCN 2403
            Y  GS   LL A+RFQ   PD   L     +TD+NV   +AD  +T      + D    + G A +D+FLC D +C V+ADL+Y+A  P   T       +T A  Y RF  +  G+   ++ D +T            N  + P A            + +V W+                                      QW+E  P L + G   R+      GN+                    ++ LRIG Y   + +CV+II F H+WM+  GW TS  C      +  +IFDSYF QA+L WPP   LN      D+   A     +   GAG  N            VS  S   TL CD     N +T  AGS  C ++      GA  Y   +P    Y+      D   + +  P R           AAI A ++TE  L   +++   G  R+              + G+  +  + A  G                  P+   + A LL                                         +L     S   AGA      T++A++ATY  R +      +A LP   A  LT +V  F ++TP  L+  +E  AR++   G+ STV W++  A G G+Y+VV  VS +  A ++  A  L+W N
Sbjct:    4 YPLGSAADLLFAARFQK--PDDPGLLGSWPTTDRNVRAFMADYTLTLTQEQSRLDAYKQIKGTADLDIFLCSDLECTVVADLIYLAHGPRYAT-------VTPAMGYVRFDTTVIGLPMQFIQDSSTM-----------NPVIVPIAESDASATP---SMAQVAWTF----------------------------------DDPQWVEADPILVSFGAMVRMIALS--GNSTEATIVHMVDTLSRNRMVDLFNSLRIGNYMTSDRECVSIITFKHDWMDQQGWDTSHNC----ISESLFIFDSYFTQANLHWPPALELN------DSTKPAEKLSVFTPLGAGAGNW-------DNAAVSVASYGRTLFCDAAMFRNVQTVAAGSSSCSIAD-----GA--YAAAQPESSEYAKAQRKGDHDAQQLGGPPRPSPPVALIIGNAAISAWNVTEDRLLQPESVKVDGGLRMEPYDYMTTDGGHNPMRGSAVEGSSVANVGPAEALLRLALGWGPVGAGPLPAVSGAELLSRMRVSWVDMTYGRPFGSSILSGINTTRASAQTVLSDVVAAELATTDTSYTRAGAFLLLSQTLVALLATYLGRHELVFFFRRARLPVCAAQLLTVVVFAFTIITPPALVLVAEGSARATGADGSSSTVRWVEGQAYGSGEYRVVGAVSVTLNAQHSQVANGLIWLN 613          
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Match: A0A836CCW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.160e-29
Identity = 96/332 (28.92%), Postives = 149/332 (44.88%), Query Frame = 1
Query:  586 MCGQAITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGLLADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTSPTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANAAVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMDRASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTYELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHLQWPPTSPLNNGDIVFDTVLTAAATGSW 1581
            +C   + +G   G C L+   + QGS   LL ASRF  ++ +    STD N GG++AD+++  +  T + D    LTG AQVD+F+CGDE C  +ADL Y+ P S  PD+     T+A  Y R PN   G+ + Y+    T ++     + SA A   PRA  +            V W++                                  ++  W+  +P+L + G   R    +  GN +W ++R G Y    G CV +    H W+N  GWGT+  CE +     TYIF+++F  A+L        ++  I   +  T + + SW
Sbjct:   67 LCVIGVQTGVQSGMCTLIGG-FPQGSAADLLMASRFDDFNGNGTVWSTDNNFGGVMADMVLDFSAETSRLDARKRLTGTAQVDLFICGDEPCNTVADLAYVLPASE-PDAPP---TLAYGYQRLPNGLLGVPTRYVVPAETQSVL----LPSA-AEAGPRAPRT------------VAWAI----------------------------------ESPHWVGNVPSLLSFGAFARTLSID--GNLNWGRVRAGNYVDSRGVCVTLFTPAHPWLNARGWGTTEDCESS----ETYIFETFFAPAYLDLDHFRSADDAGIHLPSSTTDSPSSSW 336          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349501 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1P0_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRT5_9STRA3.420e-15842.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZC60_9STRA5.220e-3832.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJG8_9STRA9.720e-3730.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRB5_9STRA1.180e-3553.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIR8_9STRA8.460e-3426.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZN9_9STRA8.770e-3430.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAV9_9STRA4.630e-3134.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZD65_9STRA9.520e-3125.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCW8_9STRA2.160e-2928.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:890909..897521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349501|estExt_Genemark1.C_Ctg_440070
Hectar predicted targeting categoryother localisation
TranscriptId349823
TrackFilteredModels1
ProteinId349501
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349501gene_9139Tribonema minus UTEX_B_3156 geneContig_44 890909..897521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349501Trimin1|349501|estExt_Genemark1.C_Ctg_440070Tribonema minus UTEX_B_3156 polypeptideContig_44 890909..897521 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9139_6exon_9139_6Tribonema minus UTEX_B_3156 exonContig_44 890909..891250 -
exon_9139_5exon_9139_5Tribonema minus UTEX_B_3156 exonContig_44 891442..891712 -
exon_9139_4exon_9139_4Tribonema minus UTEX_B_3156 exonContig_44 892326..893557 -
exon_9139_3exon_9139_3Tribonema minus UTEX_B_3156 exonContig_44 893794..894101 -
exon_9139_2exon_9139_2Tribonema minus UTEX_B_3156 exonContig_44 894995..895148 -
exon_9139_1exon_9139_1Tribonema minus UTEX_B_3156 exonContig_44 897156..897521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9139CDS_9139Tribonema minus UTEX_B_3156 CDSContig_44 897156..897521 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9139 ID=mRNA_9139|Name=jgi.p|Trimin1|349501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2673bp|location=Sequence derived from alignment at Contig_44:890909..897521- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATGCGGAGAGAGCGCAACCCTCCGTACAGCCTGCGCCGCGATGG
CGCTCCGGAGCAGGATCTCAACCCAAGTTTTCTGAGAGGTGCGTTTAGCC
TGCTGCTGAAGCTGAGTGCACGACCCGGACGTCGGAGTCTGGCGCACCAC
GCATTTTATGGTGACCACTTGCTCAAGAACGTCGTGGTGGAGCACATGGA
GTACAAGTTTCGTGTAGTCGGCGAGAGCATGCGAGGCCGGTCCGACCATG
AGTGCATGCAGCCTTATGTGAGGCGTGAGACTCAAGCAGCATTCTTCGAC
TTTGTGAAGCTGCAAGATCCGGCCGCCAACAATCCGGATTTTAATCTACA
TGCGAAGGCCGACAAGAGGAATGTCGGCCCTGAGTGGGTGCACTACGATC
TTGGACCCGGCAATGACTTGTACGCCATCGCAGAGGTCATCGACGCCGAC
GGGCGCGCTGGTTATCACCTTCACATCCTGGACGCTGCAACCGTCTACAG
CACGTGGAAGTATCAAGGGCGTGTCATGCTGGGCCCGGTTGTGAGGGATA
GCAAGGAGCTGAGGTGGGACCAGGTGCTAGACAACATGTGCGGTCAAGCC
ATCACCAGTGGGCAAGCTGTGGGCGCCTGTGGCCTCGTCAGCGACGCTTA
CACGCAAGGCAGTGGGCCAGCACTGCTTGCGGCGTCCCGCTTCCAGAGCT
ACTCGCCGGACAGCGTGGCCTTGAGCACCGACAAAAACGTGGGGGGGTTG
CTGGCAGACCTGATGATAACTAACGCAGTGGCGACGGACAAGGCCGACAC
ATCAACGGCGTTGACTGGTGTCGCGCAGGTAGACATGTTCTTGTGTGGCG
ACGAGGATTGCGCGGTGATGGCAGATCTGATGTACATTGCGCCAACGTCG
CCTACCCCTGACTCAGGAGCCAATGCGATCACCATTGCGACCGCCTACTC
GCGGTTCCCTAATAGCAAGGCCGGCATTGGATCGCATTACATGCCAGATG
GAGCAACTGCAACACTGTTCAACTATGACAAGGTCGGCTCTGCGAATGCC
GCCGTAGAGCCACGCGCAACCGACAGCTTGGGCATCAACAAGTACCACAC
TCAGCTCAATCGGGTCGTGTGGTCGCTTCCAGCTACTAATTTGACGGCGG
CCGCCGCCAGCATTGCCGACAGCAGCGGCGGCGGTCTGTCCAGCATGGAC
CGAGCCAGCGCGGGAGCGCCTGCTCCAAAGCAAGCCGAACAGTGGCTTGA
GGGTCTGCCGACATTGACAAATATGGGCATACAAACGCGGTTGTTCGGCG
CAGAGAGCCTCGGCAATGCTGACTGGTCCAAGCTGCGCATCGGGACGTAC
GAGTTGGGCAATGGCGATTGCGTCAACATCATCAACTTCGTTCACGAGTG
GATGAATACACATGGCTGGGGCACGAGCGTCGTCTGCGAAGGCACAGCAG
CACCGAAGCGCACGTACATCTTCGATTCATACTTCCCTCAAGCGCACCTG
CAGTGGCCGCCAACATCACCTCTCAACAATGGCGACATTGTCTTCGACAC
GGTGCTGACCGCGGCAGCCACTGGATCATGGTACAACTATGGCGCTGGCC
CTGTCAACACATTCACCTACAATGTCGCCGATAAAACCGTCGATGTGTCG
CCTGGAAGTCTGGCGCCAACGCTGATCTGTGATCGGCAGGACGGTAACTC
GGAGACTACTGGCGCGGGCTCCGTCGACTGCTACGTCTCTACGCAGCACA
CCACCGCTGGCGCCTTGGGTTACACTGGCGAAAGACCATGGATGCTACCT
TACAGCAACGATGGCGACACTGCCGACACAGCCGGCAAGTACGTTGTGCT
GCCGTTGCGCGGCGATGTAGCGGCGATCCTCGCCATCGACATTACGGAGC
CAGCCCTTGGTCATACAGATGCTCTGCATGCCGGCGGCGTGGCGCGCTTG
GTAGCCGGCACCATTGCCGACTACGATAATACTGCGGAAGCCGGCAATCC
TGTTCATTTTACGGCGACCGCCGCACTGCTGAAGCTTGGAGTCATGGCTA
ACAGCGGCAACGTGGCAGGCGCCATTTATGCGTTCATCGTCACCATCATC
GCAATCATCGCAACGTACGCCAGTCGTAAAGACACCGCGCACGTTCTGTC
CAAGGCACTGCCCAGTGCGGTCGCTGTCGCGTTGACAGCGATGGTCAACA
TTTTCGCTGTCGTCACGCCGGCATTGCTGCTGGCCTGGTCGGAGTTGGAC
GCCAGAAGCTCCAATCCAAGTGGTAACGAGAGCACTGTCACATGGCTGGA
CGTGCCTGCCGGCGGCTACGGCAAGTACAAGGTGGTGGCAATTGTGTCAA
CAAGCTACACGGCAGCATACAACACGGCGGCGCAAGCGCTCATGTGGTGC
AACGTGGCGTTGGCCTGTGTGTGCGGCGCACTCATGGTGTTTGCGATAGC
ACGCCAGTACAGGGCAGGCTCATTCACCAAAGGCAAGGTTGCAGGCGTCA
TAGAGGACGTGCGGCGCCCGCGCTCTTACACGCATGATGCACCGGCGCTG
TCCGGTGCGGAGAGGTCGTCAGCGAGCCTCAACTTTGCCAACACGCTGTC
CATGAAGGTGCACGAGTTACCAGCGCCGGTACGCATGCACGCACCACTAG
GCGGTGGTGATAGCGTGGCATAG
back to top

protein sequence of jgi.p|Trimin1|349501

>Trimin1|349501|estExt_Genemark1.C_Ctg_440070 ID=Trimin1|349501|estExt_Genemark1.C_Ctg_440070|Name=jgi.p|Trimin1|349501|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=891bp
MQMRRERNPPYSLRRDGAPEQDLNPSFLRGAFSLLLKLSARPGRRSLAHH
AFYGDHLLKNVVVEHMEYKFRVVGESMRGRSDHECMQPYVRRETQAAFFD
FVKLQDPAANNPDFNLHAKADKRNVGPEWVHYDLGPGNDLYAIAEVIDAD
GRAGYHLHILDAATVYSTWKYQGRVMLGPVVRDSKELRWDQVLDNMCGQA
ITSGQAVGACGLVSDAYTQGSGPALLAASRFQSYSPDSVALSTDKNVGGL
LADLMITNAVATDKADTSTALTGVAQVDMFLCGDEDCAVMADLMYIAPTS
PTPDSGANAITIATAYSRFPNSKAGIGSHYMPDGATATLFNYDKVGSANA
AVEPRATDSLGINKYHTQLNRVVWSLPATNLTAAAASIADSSGGGLSSMD
RASAGAPAPKQAEQWLEGLPTLTNMGIQTRLFGAESLGNADWSKLRIGTY
ELGNGDCVNIINFVHEWMNTHGWGTSVVCEGTAAPKRTYIFDSYFPQAHL
QWPPTSPLNNGDIVFDTVLTAAATGSWYNYGAGPVNTFTYNVADKTVDVS
PGSLAPTLICDRQDGNSETTGAGSVDCYVSTQHTTAGALGYTGERPWMLP
YSNDGDTADTAGKYVVLPLRGDVAAILAIDITEPALGHTDALHAGGVARL
VAGTIADYDNTAEAGNPVHFTATAALLKLGVMANSGNVAGAIYAFIVTII
AIIATYASRKDTAHVLSKALPSAVAVALTAMVNIFAVVTPALLLAWSELD
ARSSNPSGNESTVTWLDVPAGGYGKYKVVAIVSTSYTAAYNTAAQALMWC
NVALACVCGALMVFAIARQYRAGSFTKGKVAGVIEDVRRPRSYTHDAPAL
SGAERSSASLNFANTLSMKVHELPAPVRMHAPLGGGDSVA*
back to top

mRNA from alignment at Contig_44:890909..897521-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9139 ID=mRNA_9139|Name=jgi.p|Trimin1|349501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6613bp|location=Sequence derived from alignment at Contig_44:890909..897521- (Tribonema minus UTEX_B_3156 )
ATGCAGATGCGGAGAGAGCGCAACCCTCCGTACAGCCTGCGCCGCGATGG CGCTCCGGAGCAGGATCTCAACCCAAGTTTTCTGAGAGGTGCGTTTAGCC TGCTGCTGAAGCTGAGTGCACGACCCGGACGTCGGAGTCTGGCGCACCAC GCATTTTATGGTGACCACTTGCTCAAGAACGTCGTGGTGGAGCACATGGA GTACAAGTTTCGTGTAGTCGGCGAGAGCATGCGAGGCCGGTCCGACCATG AGTGCATGCAGCCTTATGTGAGGCGTGAGACTCAAGCAGCATTCTTCGAC TTTGTGAAGCTGCAAGATCCGGCCGCCAACAATCCGGATTTTAATCTACA TGCGAAGGCCGACAAGGTAGAGCAACTCATATCTTTTCTGGACTTGTACA GAGAAAATTCACGCGCGATGGTACAGCTGGATGCTGTGTATCGGTGGCTG CTTCAGTACGGCGACAACCTCGAGACTAAGTAACGCGATCAGTGCAAGGG CGGCGCTGGGGTATCATGATGACTCTACAGGCATTGCTCACAGCGGATGC AGCCGTGAACACTCGAGACGGGTCCGGTAACAGACGGTCACTCTGGGGTT TTTGTGCCTTGCAATGTTGTTGTTTGGCGCGCCATGACGCGCAATGCACT GCCAAGCTTTCAATGTGGGCATGCAATGCGGGCATGCGTGCAATGCGGGC ATGTAATGCAGTCATGCAACAACGACCCGAGTGCCATGCATTGTAGCCAT GCAACAAATGCCATGCGATGCAGACATGAAACGCAGCCATGCAATGCAGC AATGCAACGCCAACATGCAAACGCAACACCGTTGAAACGGAATGGTGACG CCATGTCTATACATCATGTGCACAATGCACATGCGATGCACACACACGAA AACTACTCCAGTGGAGCCTCGACTTGCGCTGACAGCTGTACCTCGTACGG TATGACAAACTGCTCGGGCATGCATGCCAGCACATGGCAGTCCAGCAGTG AAGCGTGGTACTCATTCGTGATAATGACCGCCTTGCGTGACGCCCGCTCC GCTGGCGTGTACGCCAAGTGACTGTGCTTGTTGAGAGTGTCCTTCAGGCT GCAGATTCTGCTGGCTATCTTTGACGTGTTCAAGCCAGCCCGTCTTCTTA CTTATGCACTCTGCCAACGACTTACGATTTTTCAACACGCCCTCCCACAT CACCTGAGGTGTAGGCCGCGTACCAGTCTCTTCTCTGTAGGACTGTTCCA CAAACTCAAGGATACCGCGCATGTCCAGCAGGTTGTTGAGGCGCATCAGC TGATAGTTGGCGTTCTGCAGAGAGTGGAGCCCCCTCACTGTTCTTCCCCT TTCTCCCTTCCTTTTCCCCCTTGATTAATTCCCAAAAATTCTGCCCTGCG ACATTAACATTTGTCGGTGTCGTCACTGCTGGCGGCAGTGCGCTGAGTAA TTGTAGCATTTGCATGGTTGCTGGTATCGTCATATGCATTTGCACACAAG CCAAATGGGGCCGCCCATAGTATGTTTGACAGAGAATCAATGATTGATCT CAAGTTAAAGTTTGGAAAAGTTGAAGTTGGTGGATGTGCCTCTCGAATGG TAGCGCAATCGACTCAGCTTGCCAATCGATTGCATCACTTAAGCAAAGTT TCATTCAATTTTAATGTCTGTGGGAACTAATTCCTTATCTTTCTTTGTGG TCCCGGAGAAGGCCCCCGAATCTTTCAATAAGTCTTCGGGGTTATTTGGG GGAGCCTAGCGACGTCAGCGTCATGGCTGACGCGGCGACGGACATCAGTT TTTCATCACAATAAACTGAGCACACGATGAAAAGCTTCAGCGCCGCAGGA CCAGCGGCGTTGGCAGCGTGTCTGCTGCTGGCTCCAGCACACAGGCAAGT CTTAGCTCCTAACCCTCTTCGCGTGCACTCCGCATGTGTCAGATGTGACA GGGCTGGCATCGTGCTTTGTCTGGCTAGAGCGGATTGCGCGATGCATTCT CTCAGTCTGATGCTGACGGAATTGAGGCGTTGAGACGTGTGTGCCATGTC CTCTTCCCCCATATGCTGCTGCCGCTGCAGCCTGCAAGACATTTTTTTTG TCCAACGCGGATTGGAAGGATCAGGGCAGTTGGACGCCTCCACACGCACC GGATCTCTTGAAGTACACGCCTTCTCGTCCAGCGACAAGTGGCAGACCGC GCTCTTGCACACCGGCACGCTTCAGGTGCAGTTGACGCGTCGGTGTGTGA TGCTGCAGCAGATGAGGCTTCCCCATGTGTAAATTTAAAACTTCAAACAG TGCATGTCCTGCAAATGCTCCCTCACCAGGGCACATATCTGTCTCTTGGT GCATCTCTCGGCCTCGCGTGCAGAGGAATGTCGGCCCTGAGTGGGTGCAC TACGATCTTGGACCCGGCAATGACTTGTACGCCATCGCAGAGGTCATCGA CGCCGACGGGCGCGCTGGTTATCACCTTCACATCCTGGACGCTGCAACCG TCTACAGCACGTGGAAGTATCAAGGGCGTATGTGCCTGTACGATCAACCC ATAGGATCGCACTTTCAATTCGCTGTGCACTCATCGGGCGACATCTTCGT GATGGAGGCGACCAGTGTCGGGTGGGTAGTGCATTCTATCAGTGCGACTT CGAACTGGAAGGAATGGATTTTGCAACAGCAGCCTTCTGCGCTCAAGGAT GTAACCTCCAAATTCACATTCCTAATCAATGAGCCACGCGATGTCGTCGC TGTTACGGACGGCTCAACAGGAGTGAAGATGCTTGTGCTTGATGCCGCTG ACAGCTATGCTTCCCTCAAGTTTGACAAAGTCACAGGTTTGGTGGACATG ACATCCCCGTTTCAGTATGACCTCGGCCCCGACAACAACCTGTACTGCTT CAAGCAGTCAAAAACACGCACGGCAACCACAGAGGTGTATGTGCTGGACT CCAACACTGATTTCGAAAAATTCCTACTTTGGAGCGGCACTGGCGCCCCT CAAACTGCCAGCGAGACGGTGGCGCTTGTGAGCCGTCTTCCGCCAGGTAT TACGCGTGTGACACGCTGCTTTCACTGAGCGCCGTGCACTGATTCAGAAT TTTCATGCACAGTGCAACCACCCGATGGCGCGCGACATGCCGAGTCGCCT TTAAGTGTTTCTTTTGCACTTTTCCTTGGTATACTGTTGCCTCATGCAGG TAGTGCTGTACCGGAGCCGCCGGTACCTGTGCCAATCAATCCTGCAGAAG GTAAGTAACTTGCTACGCACTGCACTATTGCGGTTAGTGGGCACATGCCT GGTGCTTGTAGGTTTTGTGACATTTGACGTGGCATTGGATGCCCACTGAT GATGACATGTGCTTGTTTTTATCGGTGTTACTGGTAGGTGCGCAGCAGCT TGCTACAGCTGCAGCTGCAGGTGTCATGCTGGGCCCGGTTGTGAGGGATA GCAAGGAGCTGAGGTGGGACCAGGTGCTAGACAACATGTGCGGTCAAGCC ATCACCAGTGGGCAAGCTGTGGGCGCCTGTGGCCTCGTCAGCGACGCTTA CACGCAAGGCAGTGGGCCAGCACTGCTTGCGGCGTCCCGCTTCCAGAGCT ACTCGCCGGACAGCGTGGCCTTGAGCACCGACAAAAACGTGGGGGGGTTG CTGGCAGACCTGATGATAACTAACGCAGTGGCGACGGACAAGGCCGACAC ATCAACGGCGTTGACTGGTGTCGCGCAGGTATGTGTTCGCAAACTGAATG ATGATCCATATGTGCTTAACCTGTCAAGTCATGCAGCTGCATCCGCCAAG ACTACAAGTCTGCCAATTCTGTAGGCTAACAGCTGCTGTTGTCCATCAAC CGCGCATGGCATGCCATGCTCAAAGTGTGAACCGAAGACTCATGATGTGT TGAAGACACATGACAGACGCTGATGGTCTGTGGTGCGTGCAATGCCACCT TTTCGTTCTGCCAGGTAGACATGTTCTTGTGTGGCGACGAGGATTGCGCG GTGATGGCAGATCTGATGTACATTGCGCCAACGTCGCCTACCCCTGACTC AGGAGCCAATGCGATCACCATTGCGACCGCCTACTCGCGGTTCCCTAATA GCAAGGCCGGCATTGGATCGCATTACATGCCAGATGGAGCAACTGCAACA CTGTTCAACTATGACAAGGTCGGCTCTGCGAATGCCGCCGTAGAGCCACG CGCAACCGACAGCTTGGGCATCAACAAGTACCACACTCAGCTCAATCGGG TCGTGTGGTCGCTTCCAGCTACTAATTTGACGGCGGCCGCCGCCAGCATT GCCGACAGCAGCGGCGGCGGTCTGTCCAGCATGGACCGAGCCAGCGCGGG AGCGCCTGCTCCAAAGCAAGCCGAACAGTGGCTTGAGGGTCTGCCGACAT TGACAAATATGGGCATACAAACGCGGTTGTTCGGCGCAGAGAGCCTCGGC AATGCTGACTGGTCCAAGCTGCGCATCGGGACGTACGAGTTGGGCAATGG CGATTGCGTCAACATCATCAACTTCGTTCACGAGTGGATGAATACACATG GCTGGGGCACGAGCGTCGTCTGCGAAGGCACAGCAGCACCGAAGCGCACG TACATCTTCGATTCATACTTCCCTCAAGCGCACCTGCAGTGGCCGCCAAC ATCACCTCTCAACAATGGCGACATTGTCTTCGACACGGTGCTGACCGCGG CAGCCACTGGATCATGGTACAACTATGGCGCTGGCCCTGTCAACACATTC ACCTACAATGTCGCCGATAAAACCGTCGATGTGTCGCCTGGAAGTCTGGC GCCAACGCTGATCTGTGATCGGCAGGACGGTAACTCGGAGACTACTGGCG CGGGCTCCGTCGACTGCTACGTCTCTACGCAGCACACCACCGCTGGCGCC TTGGGTTACACTGGCGAAAGACCATGGATGCTACCTTACAGCAACGATGG CGACACTGCCGACACAGCCGGCAAGTACGTTGTGCTGCCGTTGCGCGGCG ATGTAGCGGCGATCCTCGCCATCGACATTACGGAGCCAGCCCTTGGTCAT ACAGATGCTCTGCATGCCGGCGGCGTGGCGCGCTTGGTAGCCGGCACCAT TGCCGACTACGATAATACTGCGGAAGCCGGCAATCCTGTTCATTTTACGG CGACCGCCGCACTGCTGAAGCTTGGAGTCATGGCTAACAGCGGCAAGTCG ACCTATGCAACTTACCAACTGCCTTGGCTGTCGGACAGTGCTGTGCTGGA AACAGGCGGCGTGGCTTTCAGGAGAGCTTTCGTGAATGCCACAAGAGGAA GCGAGGGGGACAAGTCTCAGTTACTGATCAGCAAGGCGTCCTGGGATTCG TCAGGGTGGGGAAAGGTGACGCCAAGCACCAGGCTACGGACAGAGCCCGC TGCATCTGGTCCTGCCATGCGCTCGAGCATGGCGGTCAATTGGATTGACC TACTTTCACCAGCGCTAGTAAGTCCAGGCATCACCGGCTATGAGAGAAGC TCAGCCAACGTGCTAGTGTCGGCCATGGACACGCTTGCGGCGGCTGCGAC GCAGGTCCTGAACGCGGGTGCTGTGTCAACACTAAGTAAGTGCATAAAAT GGCAGTGCCTGCATTGCGGGGTGTTGTGCGCGCATGTGACCAATGTTGGC AGTTGTGAGGATGTCTCTCGTGCGCAGCTGGCCGTGCCATGCAGGATCGG TGTTGCGCAAGTGCCGCGTCGCGGATGAAAGTCACAACATGATGTTGCAC ACGACGCCGACACTGCTGCTGCTTTGTGATAATGCAGGTGTCATGGACCC AACGTTGAGCGTGGCAGGCGCCATTTATGCGTTCATCGTCACCATCATCG CAATCATCGCAACGTACGCCAGTCGTAAAGACACCGCGCACGTTCTGTCC AAGGCACTGCCCAGTGCGGTCGCTGTCGCGTTGACAGCGATGGTCAACAT TTTCGCTGTCGTCACGCCGGCATTGCTGCTGGCCTGGTCGGAGTTGGACG CCAGAAGCTCCAATCCAAGTGGTAACGAGAGCACTGTCACATGGCTGGAC GTGCCTGCCGGCGGCTACGGCAAGTACAAGGTAATAGCGTTCACAATGCG TTGGTCATTTCTTTTTCATTGCATGTATTCATCGATATGCATCACAGTCA TTAACCACTCACGGACTGTACACGATAATAGCCTGGAATACAGATGCATG ATCTGAGGTTGCTGGCGGCTCAAACCATCACCTCGTTTGCACTGGCGTTA AACATGGTTGCTCGACCGCAGGTGGTGGCAATTGTGTCAACAAGCTACAC GGCAGCATACAACACGGCGGCGCAAGCGCTCATGTGGTGCAACGTGGCGT TGGCCTGTGTGTGCGGCGCACTCATGGTGTTTGCGATAGCACGCCAGTAC AGGGCAGGCTCATTCACCAAAGGCAAGGTTGCAGGCGTCATAGAGGACGT GCGGCGCCCGCGCTCTTACACGCATGATGCACCGGCGCTGTCCGGTGCGG AGAGGTCGTCAGCGAGCCTCAACTTTGCCAACACGCTGTCCATGAAGGTG CACGAGTTACCAGCGCCGGTACGCATGCACGCACCACTAGGCGGTGGTGA TAGCGTGGCATAG
back to top

Coding sequence (CDS) from alignment at Contig_44:890909..897521-

>mRNA_9139 ID=mRNA_9139|Name=jgi.p|Trimin1|349501|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2673bp|location=Sequence derived from alignment at Contig_44:890909..897521- (Tribonema minus UTEX_B_3156 )
ATGCAGATGCGGAGAGAGCGCAACCCTCCGTACAGCCTGCGCCGCGATGG
CGCTCCGGAGCAGGATCTCAACCCAAGTTTTCTGAGAGGTGCGTTTAGCC
TGCTGCTGAAGCTGAGTGCACGACCCGGACGTCGGAGTCTGGCGCACCAC
GCATTTTATGGTGACCACTTGCTCAAGAACGTCGTGGTGGAGCACATGGA
GTACAAGTTTCGTGTAGTCGGCGAGAGCATGCGAGGCCGGTCCGACCATG
AGTGCATGCAGCCTTATGTGAGGCGTGAGACTCAAGCAGCATTCTTCGAC
TTTGTGAAGCTGCAAGATCCGGCCGCCAACAATCCGGATTTTAATCTACA
TGCGAAGGCCGACAAGAGGAATGTCGGCCCTGAGTGGGTGCACTACGATC
TTGGACCCGGCAATGACTTGTACGCCATCGCAGAGGTCATCGACGCCGAC
GGGCGCGCTGGTTATCACCTTCACATCCTGGACGCTGCAACCGTCTACAG
CACGTGGAAGTATCAAGGGCGTGTCATGCTGGGCCCGGTTGTGAGGGATA
GCAAGGAGCTGAGGTGGGACCAGGTGCTAGACAACATGTGCGGTCAAGCC
ATCACCAGTGGGCAAGCTGTGGGCGCCTGTGGCCTCGTCAGCGACGCTTA
CACGCAAGGCAGTGGGCCAGCACTGCTTGCGGCGTCCCGCTTCCAGAGCT
ACTCGCCGGACAGCGTGGCCTTGAGCACCGACAAAAACGTGGGGGGGTTG
CTGGCAGACCTGATGATAACTAACGCAGTGGCGACGGACAAGGCCGACAC
ATCAACGGCGTTGACTGGTGTCGCGCAGGTAGACATGTTCTTGTGTGGCG
ACGAGGATTGCGCGGTGATGGCAGATCTGATGTACATTGCGCCAACGTCG
CCTACCCCTGACTCAGGAGCCAATGCGATCACCATTGCGACCGCCTACTC
GCGGTTCCCTAATAGCAAGGCCGGCATTGGATCGCATTACATGCCAGATG
GAGCAACTGCAACACTGTTCAACTATGACAAGGTCGGCTCTGCGAATGCC
GCCGTAGAGCCACGCGCAACCGACAGCTTGGGCATCAACAAGTACCACAC
TCAGCTCAATCGGGTCGTGTGGTCGCTTCCAGCTACTAATTTGACGGCGG
CCGCCGCCAGCATTGCCGACAGCAGCGGCGGCGGTCTGTCCAGCATGGAC
CGAGCCAGCGCGGGAGCGCCTGCTCCAAAGCAAGCCGAACAGTGGCTTGA
GGGTCTGCCGACATTGACAAATATGGGCATACAAACGCGGTTGTTCGGCG
CAGAGAGCCTCGGCAATGCTGACTGGTCCAAGCTGCGCATCGGGACGTAC
GAGTTGGGCAATGGCGATTGCGTCAACATCATCAACTTCGTTCACGAGTG
GATGAATACACATGGCTGGGGCACGAGCGTCGTCTGCGAAGGCACAGCAG
CACCGAAGCGCACGTACATCTTCGATTCATACTTCCCTCAAGCGCACCTG
CAGTGGCCGCCAACATCACCTCTCAACAATGGCGACATTGTCTTCGACAC
GGTGCTGACCGCGGCAGCCACTGGATCATGGTACAACTATGGCGCTGGCC
CTGTCAACACATTCACCTACAATGTCGCCGATAAAACCGTCGATGTGTCG
CCTGGAAGTCTGGCGCCAACGCTGATCTGTGATCGGCAGGACGGTAACTC
GGAGACTACTGGCGCGGGCTCCGTCGACTGCTACGTCTCTACGCAGCACA
CCACCGCTGGCGCCTTGGGTTACACTGGCGAAAGACCATGGATGCTACCT
TACAGCAACGATGGCGACACTGCCGACACAGCCGGCAAGTACGTTGTGCT
GCCGTTGCGCGGCGATGTAGCGGCGATCCTCGCCATCGACATTACGGAGC
CAGCCCTTGGTCATACAGATGCTCTGCATGCCGGCGGCGTGGCGCGCTTG
GTAGCCGGCACCATTGCCGACTACGATAATACTGCGGAAGCCGGCAATCC
TGTTCATTTTACGGCGACCGCCGCACTGCTGAAGCTTGGAGTCATGGCTA
ACAGCGGCAACGTGGCAGGCGCCATTTATGCGTTCATCGTCACCATCATC
GCAATCATCGCAACGTACGCCAGTCGTAAAGACACCGCGCACGTTCTGTC
CAAGGCACTGCCCAGTGCGGTCGCTGTCGCGTTGACAGCGATGGTCAACA
TTTTCGCTGTCGTCACGCCGGCATTGCTGCTGGCCTGGTCGGAGTTGGAC
GCCAGAAGCTCCAATCCAAGTGGTAACGAGAGCACTGTCACATGGCTGGA
CGTGCCTGCCGGCGGCTACGGCAAGTACAAGGTGGTGGCAATTGTGTCAA
CAAGCTACACGGCAGCATACAACACGGCGGCGCAAGCGCTCATGTGGTGC
AACGTGGCGTTGGCCTGTGTGTGCGGCGCACTCATGGTGTTTGCGATAGC
ACGCCAGTACAGGGCAGGCTCATTCACCAAAGGCAAGGTTGCAGGCGTCA
TAGAGGACGTGCGGCGCCCGCGCTCTTACACGCATGATGCACCGGCGCTG
TCCGGTGCGGAGAGGTCGTCAGCGAGCCTCAACTTTGCCAACACGCTGTC
CATGAAGGTGCACGAGTTACCAGCGCCGGTACGCATGCACGCACCACTAG
GCGGTGGTGATAGCGTGGCATAG
back to top