mRNA_910 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156773
Unique NamemRNA_910
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A0A835ZKR4_9STRA (Histone H4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKR4_9STRA)

HSP 1 Score: 197 bits (500), Expect = 8.840e-64
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 MPNAQAVKQPPAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            MPNAQAVKQPPAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG
Sbjct:    1 MPNAQAVKQPPAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 101
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BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A0A3B4F7D7_9CICH (Histone H4 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4F7D7_9CICH)

HSP 1 Score: 113 bits (282), Expect = 1.340e-30
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   25 QPPAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            QP +AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D  T  E  KRKT T MDVVYALKRQGRTL+GFGG
Sbjct:    6 QPKSAKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 97
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BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A0A7L3HM68_9PASS (Histone H4 (Fragment) n=1 Tax=Buphagus erythrorhynchus TaxID=245048 RepID=A0A7L3HM68_9PASS)

HSP 1 Score: 112 bits (281), Expect = 2.260e-30
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:   37 AKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D  T  E  KRKT TPMDVVYALKRQGRTL+GFGG
Sbjct:   16 AKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTPMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: UPI001E272227 (histone H4-like n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E272227)

HSP 1 Score: 112 bits (281), Expect = 2.260e-30
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:   37 AKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R + R FLG+V++D  T  E  KRKT T MDVVYALKRQGRTL+GFGG
Sbjct:   16 AKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLMYEETRGILRLFLGNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A0A672FMS9_SALFA (Histone H4 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672FMS9_SALFA)

HSP 1 Score: 112 bits (279), Expect = 3.710e-30
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   31 PAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            P AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D  T  E  KRKT T MDVVYALKRQGRTL+GFGG
Sbjct:    7 PGAKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 96
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: UPI001EEC1A37 (histone H4-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEC1A37)

HSP 1 Score: 112 bits (279), Expect = 4.550e-30
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:   37 AKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D  T  E  KRKT T MDVVYALKRQGRTLHGFGG
Sbjct:   16 AKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLHGFGG 103
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A0A8C3RS76_CHESE (Histone H4 n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RS76_CHESE)

HSP 1 Score: 111 bits (278), Expect = 6.460e-30
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:   37 AKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL DV++D  T  E  KRKT T MDVVYALKRQGRTL+GFGG
Sbjct:   16 AKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: P91879_9HYME (Histone H4 n=2 Tax=Endopterygota TaxID=33392 RepID=P91879_9HYME)

HSP 1 Score: 111 bits (277), Expect = 9.170e-30
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:   37 AKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            AKRHRK V D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D  T  E  KRKT T MDVVYALKRQGRTL+GFGG
Sbjct:   16 AKRHRKAVRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A0A672L853_SINGR (Histone H4 n=9 Tax=Vertebrata TaxID=7742 RepID=A0A672L853_SINGR)

HSP 1 Score: 110 bits (276), Expect = 9.470e-30
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:   28 PPAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            P  AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D  T  E  KRKT T MDVVYALKRQGRTL+GFGG
Sbjct:    2 PGGAKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 92
[Close]
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Match: A8JIN9_CHLRE (Histone H4 n=2 Tax=Viridiplantae TaxID=33090 RepID=A8JIN9_CHLRE)

HSP 1 Score: 110 bits (275), Expect = 1.650e-29
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:   37 AKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVYEEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFGG 303
            AKRHRK + D ++   TKP +RRL RRGGVKRISGL+YEE R V + FL +V++D+ T  E  +RKT T MDVVYALKRQGRTL+GFGG
Sbjct:   12 AKRHRKVLRDNIQGI-TKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 99
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156773 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZKR4_9STRA8.840e-64100.00Histone H4 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A3B4F7D7_9CICH1.340e-3064.52Histone H4 n=2 Tax=Percomorphaceae TaxID=1489872 R... [more]
A0A7L3HM68_9PASS2.260e-3066.29Histone H4 (Fragment) n=1 Tax=Buphagus erythrorhyn... [more]
UPI001E2722272.260e-3066.29histone H4-like n=1 Tax=Melitaea cinxia TaxID=1133... [more]
A0A672FMS9_SALFA3.710e-3064.84Histone H4 n=2 Tax=Percomorphaceae TaxID=1489872 R... [more]
UPI001EEC1A374.550e-3066.29histone H4-like n=1 Tax=Daphnia pulicaria TaxID=35... [more]
A0A8C3RS76_CHESE6.460e-3066.29Histone H4 n=1 Tax=Chelydra serpentina TaxID=8475 ... [more]
P91879_9HYME9.170e-3066.29Histone H4 n=2 Tax=Endopterygota TaxID=33392 RepID... [more]
A0A672L853_SINGR9.470e-3064.13Histone H4 n=9 Tax=Vertebrata TaxID=7742 RepID=A0A... [more]
A8JIN9_CHLRE1.650e-2964.04Histone H4 n=2 Tax=Viridiplantae TaxID=33090 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:45319..45624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156773|e_gw1.1.16.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11252,ko:K11254
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045087,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051707,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0098542,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
COG categoryB
Max annot lvl33208|Metazoa
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,3A1HI@33154|Opisthokonta,3BQAA@33208|Metazoa,3D789@33213|Bilateria,40D3R@6231|Nematoda,1KVSY@119089|Chromadorea,412E7@6236|Rhabditida
Evalue1.5e-30
Seed ortholog34506.g3542
Hectar predicted targeting categoryother localisation
TranscriptId157095
TrackFilteredModels1
ProteinId156773
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156773gene_910Tribonema minus UTEX_B_3156 geneContig_1 45319..45624 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_910_1exon_910_1Tribonema minus UTEX_B_3156 exonContig_1 45319..45624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_910CDS_910Tribonema minus UTEX_B_3156 CDSContig_1 45319..45624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156773Trimin1|156773|e_gw1.1.16.1Tribonema minus UTEX_B_3156 polypeptideContig_1 45319..45624 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_910 ID=mRNA_910|Name=jgi.p|Trimin1|156773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_1:45319..45624+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAACGCGCAGGCAGTCAAGCAGCCCCCCGCGGCCAAGCGCCACAG
GAAGAAGGTCGTAGACAAAATGAAAGCCGCCAGGACCAAGCCGGGGGTCC
GCAGGCTCTGCCGGAGGGGGGGCGTCAAGCGCATCAGCGGCCTGGTCTAC
GAGGAGGCGCGGATCGTCTACAGGAAGTTCCTCGGCGACGTACTGAAGGA
CACGGCGACCATGGTGGAGTTCGGCAAGCGGAAGACCGCGACCCCGATGG
ACGTCGTCTACGCCCTCAAGCGGCAGGGCCGCACCCTGCACGGGTTCGGA
GGCTAG
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protein sequence of jgi.p|Trimin1|156773

>Trimin1|156773|e_gw1.1.16.1 ID=Trimin1|156773|e_gw1.1.16.1|Name=jgi.p|Trimin1|156773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp
MPNAQAVKQPPAAKRHRKKVVDKMKAARTKPGVRRLCRRGGVKRISGLVY
EEARIVYRKFLGDVLKDTATMVEFGKRKTATPMDVVYALKRQGRTLHGFG
G*
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mRNA from alignment at Contig_1:45319..45624+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_910 ID=mRNA_910|Name=jgi.p|Trimin1|156773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_1:45319..45624+ (Tribonema minus UTEX_B_3156 )
ATGCCGAACGCGCAGGCAGTCAAGCAGCCCCCCGCGGCCAAGCGCCACAG
GAAGAAGGTCGTAGACAAAATGAAAGCCGCCAGGACCAAGCCGGGGGTCC
GCAGGCTCTGCCGGAGGGGGGGCGTCAAGCGCATCAGCGGCCTGGTCTAC
GAGGAGGCGCGGATCGTCTACAGGAAGTTCCTCGGCGACGTACTGAAGGA
CACGGCGACCATGGTGGAGTTCGGCAAGCGGAAGACCGCGACCCCGATGG
ACGTCGTCTACGCCCTCAAGCGGCAGGGCCGCACCCTGCACGGGTTCGGA
GGCTAG
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Coding sequence (CDS) from alignment at Contig_1:45319..45624+

>mRNA_910 ID=mRNA_910|Name=jgi.p|Trimin1|156773|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_1:45319..45624+ (Tribonema minus UTEX_B_3156 )
ATGCCGAACGCGCAGGCAGTCAAGCAGCCCCCCGCGGCCAAGCGCCACAG
GAAGAAGGTCGTAGACAAAATGAAAGCCGCCAGGACCAAGCCGGGGGTCC
GCAGGCTCTGCCGGAGGGGGGGCGTCAAGCGCATCAGCGGCCTGGTCTAC
GAGGAGGCGCGGATCGTCTACAGGAAGTTCCTCGGCGACGTACTGAAGGA
CACGGCGACCATGGTGGAGTTCGGCAAGCGGAAGACCGCGACCCCGATGG
ACGTCGTCTACGCCCTCAAGCGGCAGGGCCGCACCCTGCACGGGTTCGGA
GGCTAG
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