mRNA_9011 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A835YY55_9STRA (Fibronectin-binding protein A N-terminus-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY55_9STRA) HSP 1 Score: 237 bits (604), Expect = 4.030e-79 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 354 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK Sbjct: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 118
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A6H5L2J2_9PHAE (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J2_9PHAE) HSP 1 Score: 130 bits (327), Expect = 7.530e-33 Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 34 MTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 354 M+REL +IVPARVENA+Q+DA NLA+ LR +EG+ WL++SWHP+GARCH+G P+ KEQ++Y+FSQ LR+ ++GL ++SV LA P ERVV A RL T + Sbjct: 1 MSRELEQSIVPARVENAYQMDAHNLALQLRTLEGNIWLHVSWHPKGARCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIISVGLARPMERVVRLDLAPRLDTPATFR 107
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: UPI001688A56F (fibronectin-binding domain-containing protein n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI001688A56F) HSP 1 Score: 111 bits (277), Expect = 3.840e-26 Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTD 339 +Q+VDFTT + EL +PAR+E +Q+D LA+GLR ++ WL +SWHPQ AR H+G PP+ + +++FS+QLR L GL LVS+ LAAP+ERV+ FA+R D Sbjct: 1 MQAVDFTTLVAAVEELRQLWLPARLEQVYQLDRTTLALGLRTLQNRGWLTLSWHPQFARLHLGDPPPRTPD--TFTFSEQLRHALNGLALVSLELAAPWERVLDLQFARRPGD 111
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A0M2Q4I6_PROHO (Rqc2 homolog RqcH n=1 Tax=Prochlorothrix hollandica PCC 9006 = CALU 1027 TaxID=317619 RepID=A0A0M2Q4I6_PROHO) HSP 1 Score: 110 bits (276), Expect = 5.420e-26 Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTH 351 +Q VDFTT + L +PARVE +Q D LA+GLR ++G WL + WHPQGAR H+G +PP+ + +++FS+Q+ + +KGL L +AL AP+ERVV FA R D P H Sbjct: 1 MQPVDFTTLVASCAALRQGWLPARVEQVYQCDRHTLALGLRTLQGRGWLTLCWHPQGARLHLGDSPPR--DPDTFTFSKQVLSQIKGLALSQIALVAPWERVVDLQFAPR-PDEPAH 114
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: B0JJ07_MICAN (Rqc2 homolog RqcH n=79 Tax=Chroococcales TaxID=1118 RepID=B0JJ07_MICAN) HSP 1 Score: 108 bits (269), Expect = 4.820e-25 Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTD 339 +QSVDFTT E+A +PAR+E +QID +A+ LR + WL ISWHPQGAR HIG PPK + +++FS QLR L GL L +A AP+ERV+ FAQR D Sbjct: 1 MQSVDFTTLSATCAEIAATWLPARLEQVYQIDRQTIALYLRTFDRKGWLIISWHPQGARLHIGDPPPKVPD--TFTFSDQLRHQLNGLALTKLAFVAPWERVIDLQFAQRPDD 111
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A1Z4R9E2_9CYAN (Rqc2 homolog RqcH n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R9E2_9CYAN) HSP 1 Score: 107 bits (267), Expect = 9.060e-25 Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQR 330 +QS DFTT + EL + +P+R+E +Q D ++I LR ++G WL ISWHPQ AR HIG APP+ + +++FSQQL + L GL LV +A +P+ERVV FA+R Sbjct: 1 MQSFDFTTLTAVCSELRQSFLPSRLEQVYQRDRATISIALRTLQGRGWLEISWHPQAARLHIGDAPPRTPD--TFTFSQQLLSQLGGLALVEIATTSPWERVVDLQFARR 108
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A1Q2TU73_9SYNE (Rqc2 homolog RqcH n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1Q2TU73_9SYNE) HSP 1 Score: 107 bits (267), Expect = 9.430e-25 Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 345 +Q+VD+TT + + EL VPAR+E +Q D L + LR +E EWL +SWHPQ AR H+G PP+ + +++FS QLR L+KG L+ +AL P+ERVV F F R + P Sbjct: 3 IQAVDYTTLVAVVTELQQDWVPARLEQVYQYDKQTLCLALRTLEKREWLWLSWHPQAARLHLGDRPPR--DPDTFTFSDQLRHLIKGSALLGIALIQPWERVVDFQFGDRPGEPP 115
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A6P0YDY8_9CYAN (Uncharacterized protein (Fragment) n=1 Tax=Okeania sp. SIO1H6 TaxID=2607778 RepID=A0A6P0YDY8_9CYAN) HSP 1 Score: 102 bits (254), Expect = 1.110e-24 Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 345 +Q VD+TT + EL +PAR+E +Q D F + I LR ++ WL+ISWHPQGAR I PP+ + +++FSQQLR L GL L+++ +P+ERV+ F FA+R +AP Sbjct: 1 MQPVDYTTLIASCSELRVKWLPARLEQVYQRDRFTITIALRTLKKRGWLDISWHPQGARICISDPPPRAPD--TFTFSQQLRHQLGGLALIAIVEVSPWERVLDFQFAKRPGEAP 113
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: B1XM13_SYNP2 (Rqc2 homolog RqcH n=12 Tax=Synechococcus TaxID=1129 RepID=B1XM13_SYNP2) HSP 1 Score: 106 bits (265), Expect = 1.750e-24 Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 345 +Q+VD+TT + + EL VPAR+E +Q D L + LR +E EWL +SWHPQ AR H+G PP+ + +++FS QLR L+KG L+ + L P+ERVV F F +R + P Sbjct: 3 IQAVDYTTLVALVTELQRDWVPARLEQVYQYDKQTLCLALRTLEKREWLWLSWHPQAARMHLGDRPPR--DPDTFTFSDQLRHLIKGSALLGIELIQPWERVVDFQFGRRPGEVP 115
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A2A2TL55_9CYAN (Rqc2 homolog RqcH n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2TL55_9CYAN) HSP 1 Score: 106 bits (264), Expect = 2.320e-24 Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQR 330 +QS DFTT + EL + +P+R+E +Q D ++I LR ++G WL ISWHPQ AR HIG APP+ + +++FSQQL + L GL LV++A +P+ERV+ FA+R Sbjct: 1 MQSFDFTTLTAVCSELRQSFLPSRLEQVYQRDRNTISIALRTLQGRGWLEISWHPQAARLHIGDAPPRIPD--TFAFSQQLLSQLNGLALVAIAATSPWERVLDLQFARR 108 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9011 ID=mRNA_9011|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_28:610488..611618- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTGCAGTCGGTGGACTTCACAACAGCGCTTTTGATGACCAGGGAGCTGGCback to top protein sequence of jgi.p|Trimin1|133303 >Trimin1|133303|gw1.28.23.1 ID=Trimin1|133303|gw1.28.23.1|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNback to top mRNA from alignment at Contig_28:610488..611618- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9011 ID=mRNA_9011|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_28:610488..611618- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_28:610488..611618- >mRNA_9011 ID=mRNA_9011|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_28:610488..611618- (Tribonema minus UTEX_B_3156 )back to top |