mRNA_9011 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133303
Unique NamemRNA_9011
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A835YY55_9STRA (Fibronectin-binding protein A N-terminus-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY55_9STRA)

HSP 1 Score: 237 bits (604), Expect = 4.030e-79
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 354
            LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK
Sbjct:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 118          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A6H5L2J2_9PHAE (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.530e-33
Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 1
Query:   34 MTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 354
            M+REL  +IVPARVENA+Q+DA NLA+ LR +EG+ WL++SWHP+GARCH+G   P+ KEQ++Y+FSQ LR+ ++GL ++SV LA P ERVV    A RL    T +
Sbjct:    1 MSRELEQSIVPARVENAYQMDAHNLALQLRTLEGNIWLHVSWHPKGARCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIISVGLARPMERVVRLDLAPRLDTPATFR 107          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: UPI001688A56F (fibronectin-binding domain-containing protein n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI001688A56F)

HSP 1 Score: 111 bits (277), Expect = 3.840e-26
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTD 339
            +Q+VDFTT +    EL    +PAR+E  +Q+D   LA+GLR ++   WL +SWHPQ AR H+G  PP+  +  +++FS+QLR  L GL LVS+ LAAP+ERV+   FA+R  D
Sbjct:    1 MQAVDFTTLVAAVEELRQLWLPARLEQVYQLDRTTLALGLRTLQNRGWLTLSWHPQFARLHLGDPPPRTPD--TFTFSEQLRHALNGLALVSLELAAPWERVLDLQFARRPGD 111          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A0M2Q4I6_PROHO (Rqc2 homolog RqcH n=1 Tax=Prochlorothrix hollandica PCC 9006 = CALU 1027 TaxID=317619 RepID=A0A0M2Q4I6_PROHO)

HSP 1 Score: 110 bits (276), Expect = 5.420e-26
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTH 351
            +Q VDFTT +     L    +PARVE  +Q D   LA+GLR ++G  WL + WHPQGAR H+G +PP+  +  +++FS+Q+ + +KGL L  +AL AP+ERVV   FA R  D P H
Sbjct:    1 MQPVDFTTLVASCAALRQGWLPARVEQVYQCDRHTLALGLRTLQGRGWLTLCWHPQGARLHLGDSPPR--DPDTFTFSKQVLSQIKGLALSQIALVAPWERVVDLQFAPR-PDEPAH 114          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: B0JJ07_MICAN (Rqc2 homolog RqcH n=79 Tax=Chroococcales TaxID=1118 RepID=B0JJ07_MICAN)

HSP 1 Score: 108 bits (269), Expect = 4.820e-25
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTD 339
            +QSVDFTT      E+A   +PAR+E  +QID   +A+ LR  +   WL ISWHPQGAR HIG  PPK  +  +++FS QLR  L GL L  +A  AP+ERV+   FAQR  D
Sbjct:    1 MQSVDFTTLSATCAEIAATWLPARLEQVYQIDRQTIALYLRTFDRKGWLIISWHPQGARLHIGDPPPKVPD--TFTFSDQLRHQLNGLALTKLAFVAPWERVIDLQFAQRPDD 111          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A1Z4R9E2_9CYAN (Rqc2 homolog RqcH n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R9E2_9CYAN)

HSP 1 Score: 107 bits (267), Expect = 9.060e-25
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQR 330
            +QS DFTT   +  EL  + +P+R+E  +Q D   ++I LR ++G  WL ISWHPQ AR HIG APP+  +  +++FSQQL + L GL LV +A  +P+ERVV   FA+R
Sbjct:    1 MQSFDFTTLTAVCSELRQSFLPSRLEQVYQRDRATISIALRTLQGRGWLEISWHPQAARLHIGDAPPRTPD--TFTFSQQLLSQLGGLALVEIATTSPWERVVDLQFARR 108          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A1Q2TU73_9SYNE (Rqc2 homolog RqcH n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1Q2TU73_9SYNE)

HSP 1 Score: 107 bits (267), Expect = 9.430e-25
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 345
            +Q+VD+TT + +  EL    VPAR+E  +Q D   L + LR +E  EWL +SWHPQ AR H+G  PP+  +  +++FS QLR L+KG  L+ +AL  P+ERVV F F  R  + P
Sbjct:    3 IQAVDYTTLVAVVTELQQDWVPARLEQVYQYDKQTLCLALRTLEKREWLWLSWHPQAARLHLGDRPPR--DPDTFTFSDQLRHLIKGSALLGIALIQPWERVVDFQFGDRPGEPP 115          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A6P0YDY8_9CYAN (Uncharacterized protein (Fragment) n=1 Tax=Okeania sp. SIO1H6 TaxID=2607778 RepID=A0A6P0YDY8_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 1.110e-24
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 345
            +Q VD+TT +    EL    +PAR+E  +Q D F + I LR ++   WL+ISWHPQGAR  I   PP+  +  +++FSQQLR  L GL L+++   +P+ERV+ F FA+R  +AP
Sbjct:    1 MQPVDYTTLIASCSELRVKWLPARLEQVYQRDRFTITIALRTLKKRGWLDISWHPQGARICISDPPPRAPD--TFTFSQQLRHQLGGLALIAIVEVSPWERVLDFQFAKRPGEAP 113          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: B1XM13_SYNP2 (Rqc2 homolog RqcH n=12 Tax=Synechococcus TaxID=1129 RepID=B1XM13_SYNP2)

HSP 1 Score: 106 bits (265), Expect = 1.750e-24
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 345
            +Q+VD+TT + +  EL    VPAR+E  +Q D   L + LR +E  EWL +SWHPQ AR H+G  PP+  +  +++FS QLR L+KG  L+ + L  P+ERVV F F +R  + P
Sbjct:    3 IQAVDYTTLVALVTELQRDWVPARLEQVYQYDKQTLCLALRTLEKREWLWLSWHPQAARMHLGDRPPR--DPDTFTFSDQLRHLIKGSALLGIELIQPWERVVDFQFGRRPGEVP 115          
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Match: A0A2A2TL55_9CYAN (Rqc2 homolog RqcH n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2TL55_9CYAN)

HSP 1 Score: 106 bits (264), Expect = 2.320e-24
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQR 330
            +QS DFTT   +  EL  + +P+R+E  +Q D   ++I LR ++G  WL ISWHPQ AR HIG APP+  +  +++FSQQL + L GL LV++A  +P+ERV+   FA+R
Sbjct:    1 MQSFDFTTLTAVCSELRQSFLPSRLEQVYQRDRNTISIALRTLQGRGWLEISWHPQAARLHIGDAPPRIPD--TFAFSQQLLSQLNGLALVAIAATSPWERVLDLQFARR 108          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY55_9STRA4.030e-79100.00Fibronectin-binding protein A N-terminus-domain-co... [more]
A0A6H5L2J2_9PHAE7.530e-3356.07NFACT-R_1 domain-containing protein n=1 Tax=Ectoca... [more]
UPI001688A56F3.840e-2647.79fibronectin-binding domain-containing protein n=1 ... [more]
A0A0M2Q4I6_PROHO5.420e-2646.15Rqc2 homolog RqcH n=1 Tax=Prochlorothrix hollandic... [more]
B0JJ07_MICAN4.820e-2549.56Rqc2 homolog RqcH n=79 Tax=Chroococcales TaxID=111... [more]
A0A1Z4R9E2_9CYAN9.060e-2547.27Rqc2 homolog RqcH n=1 Tax=Calothrix sp. NIES-4101 ... [more]
A0A1Q2TU73_9SYNE9.430e-2545.22Rqc2 homolog RqcH n=3 Tax=unclassified Synechococc... [more]
A0A6P0YDY8_9CYAN1.110e-2444.35Uncharacterized protein (Fragment) n=1 Tax=Okeania... [more]
B1XM13_SYNP21.750e-2444.35Rqc2 homolog RqcH n=12 Tax=Synechococcus TaxID=112... [more]
A0A2A2TL55_9CYAN2.320e-2446.36Rqc2 homolog RqcH n=1 Tax=Calothrix elsteri CCALA ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:610488..611618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133303|gw1.28.23.1
Descriptionsecreted protein MPB70
COG categoryK
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG1293@1|root,COG1293@2|Bacteria,1G01H@1117|Cyanobacteria,1MKWV@1212|Prochloraceae
Evalue8.88e-27
Seed ortholog317619.ANKN01000196_gene11
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF814
Ec32 orthologEc-26_001800.1
TranscriptId133625
TrackFilteredModels1
ProteinId133303
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133303gene_9011Tribonema minus UTEX_B_3156 geneContig_28 610488..611618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133303Trimin1|133303|gw1.28.23.1Tribonema minus UTEX_B_3156 polypeptideContig_28 610488..611618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9011_2exon_9011_2Tribonema minus UTEX_B_3156 exonContig_28 610488..610673 -
exon_9011_1exon_9011_1Tribonema minus UTEX_B_3156 exonContig_28 611451..611618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9011CDS_9011Tribonema minus UTEX_B_3156 CDSContig_28 611451..611618 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9011 ID=mRNA_9011|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_28:610488..611618- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGTCGGTGGACTTCACAACAGCGCTTTTGATGACCAGGGAGCTGGC
GAATGCAATAGTGCCGGCGCGGGTGGAGAATGCCTTTCAAATAGATGCCT
TCAATCTGGCGATCGGGCTGAGGATGGTGGAGGGCAGCGAATGGCTCAAC
ATCAGCTGGCATCCTCAGGGCGCGCGCTGCCACATCGGGCCCGCCCCGCC
CAAGGGCAAGGAGCAGCAGTCGTACAGCTTCAGCCAGCAGCTGCGAACGC
TGCTGAAGGGGCTGACGCTCGTGAGCGTGGCGCTAGCGGCGCCGTTTGAG
CGCGTTGTCGCGTTCTCTTTTGCGCAGCGGCTGACAGACGCGCCCACGCA
CAAG
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protein sequence of jgi.p|Trimin1|133303

>Trimin1|133303|gw1.28.23.1 ID=Trimin1|133303|gw1.28.23.1|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLN
ISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFE
RVVAFSFAQRLTDAPTHK
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mRNA from alignment at Contig_28:610488..611618-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9011 ID=mRNA_9011|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_28:610488..611618- (Tribonema minus UTEX_B_3156 )
TTGCAGTCGGTGGACTTCACAACAGCGCTTTTGATGACCAGGGAGCTGGC GAATGCAATAGTGCCGGCGCGGGTGGAGAATGCCTTTCAAATAGATGCCT TCAATCTGGCGATCGGGCTGAGGATGGTGGAGGGCAGCGAATGGCTCAAC ATCAGCTGGCATCCTCAGGTAAGTGGTGGTGTATATCAGGAACTTTCATG TTTATTTGTGCGTGGTGCTCTGTGCATGCACTACATAAGATGAAAGTTGA TGTCTTGTGACTGTCATGACGCACATACAGAAGCTACATGCACGCTGCTT GAAATTGTACCAATCTTGTATGCACGCCCCAGGTTGTGGCATCTGCCACA CACTCGCTGCAGCTTGCACAAATCTGTGCTTCATTAGCAGGTGATCAGCT GCGGCTATGCCACCCAGACAGTTGCAGCACACTTTTGCCCTTCAACTTCC CGTTGCGTTGATCATTCACCTCTGGCATGGGCCAACGATATGCGCTGTCA CGTCATGCTGATTGGTTGAGCAATGATACAGTGTCCTGGAGGTGCGCGAG AGCTAACCGCACCTGCACGCGCAGCTGTCAGCCTTGTCACATGAGCGCAC TCTTTCCCAGTTTGACGTTGCTGGGCCTGGAATCAAGCTGATCCCCTCAT AAACGCAGATATATGTGCCTTGTACTCTGACCCGCCAGCAGCGTATCGCT GCAACCACACAAACATGATGAAATCATGCCAACGCTCCTGACCGCCTCTG TACCATTCCCTTGAACAGTATTTACGGAACTTTCCCAAGGCGCGGGCTGC CTGCCGCTCCTGACCGCCTCTGTACCACTATTCTGAACAGTCTTTCCGGA AAGTTCCCAGGGTGCGCAGCGCTCCTTCCTGACCGCCTCTGTACCATTAC CCTGAACGGTCTTCCACCTGAACGTTCTCCGCGGAACGTTCTCAGGGCGC GCGCTGCCACATCGGGCCCGCCCCGCCCAAGGGCAAGGAGCAGCAGTCGT ACAGCTTCAGCCAGCAGCTGCGAACGCTGCTGAAGGGGCTGACGCTCGTG AGCGTGGCGCTAGCGGCGCCGTTTGAGCGCGTTGTCGCGTTCTCTTTTGC GCAGCGGCTGACAGACGCGCCCACGCACAAG
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Coding sequence (CDS) from alignment at Contig_28:610488..611618-

>mRNA_9011 ID=mRNA_9011|Name=jgi.p|Trimin1|133303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_28:610488..611618- (Tribonema minus UTEX_B_3156 )
TTGCAGTCGGTGGACTTCACAACAGCGCTTTTGATGACCAGGGAGCTGGC
GAATGCAATAGTGCCGGCGCGGGTGGAGAATGCCTTTCAAATAGATGCCT
TCAATCTGGCGATCGGGCTGAGGATGGTGGAGGGCAGCGAATGGCTCAAC
ATCAGCTGGCATCCTCAGGGCGCGCGCTGCCACATCGGGCCCGCCCCGCC
CAAGGGCAAGGAGCAGCAGTCGTACAGCTTCAGCCAGCAGCTGCGAACGC
TGCTGAAGGGGCTGACGCTCGTGAGCGTGGCGCTAGCGGCGCCGTTTGAG
CGCGTTGTCGCGTTCTCTTTTGCGCAGCGGCTGACAGACGCGCCCACGCA
CAAG
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