mRNA_8943 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349867
Unique NamemRNA_8943
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349867 vs. uniprot
Match: A0A835YYW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW1_9STRA)

HSP 1 Score: 449 bits (1155), Expect = 5.720e-158
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MVIAAFARLWLPIFRYVGFHYLNAALVSRGWRALYATVHRAFRSRLPLLPCCTLRGHPQNLHLVTSIKHMASSVPLLAWAFDNGCPRNSVILWSAAARGDLAVLKFAHESDVPWGMDYPWGAAWRATETCSAAAQHGRVEALLWLRDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRDISSAVQPSVNGFRGPVDRILACVEWVLADGCPCDEETMPYCQHLRERVAREAAAAAEGGSAGRAGSGA 756
            MVIAAFARLWLPIFRYVGFHYLNAALVSRGWRALYATVHRAFRSRLPLLPCCTLRGHPQNLHLVTSIKHMASSVPLLAWAFDNGCPRNSVILWSAAARGDLAVLKFAHESDVPWGMDYPWGAAWRATETCSAAAQHGRVEALLWLRDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRDISSAVQPSVNGFRGPVDRILACVEWVLADGCPCDEETMPYCQHLRERVAREAAAAAEGGSAGRAGSGA
Sbjct:    1 MVIAAFARLWLPIFRYVGFHYLNAALVSRGWRALYATVHRAFRSRLPLLPCCTLRGHPQNLHLVTSIKHMASSVPLLAWAFDNGCPRNSVILWSAAARGDLAVLKFAHESDVPWGMDYPWGAAWRATETCSAAAQHGRVEALLWLRDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRDISSAVQPSVNGFRGPVDRILACVEWVLADGCPCDEETMPYCQHLRERVAREAAAAAEGGSAGRAGSGA 252
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349867 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YYW1_9STRA5.720e-158100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:710704..712205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349867|estExt_Genemark1.C_Ctg_500082
CAZyGH16
BRITEko00000,ko04131
KEGG koko:K21850
Descriptionspectrin binding
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Evalue0.000184
Seed ortholog2903.EOD15902
Hectar predicted targeting categoryother localisation
TranscriptId350189
TrackFilteredModels1
ProteinId349867
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349867gene_8943Tribonema minus UTEX_B_3156 geneContig_50 710704..712205 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8943_3exon_8943_3Tribonema minus UTEX_B_3156 exonContig_50 710704..711171 -
exon_8943_2exon_8943_2Tribonema minus UTEX_B_3156 exonContig_50 711694..712091 -
exon_8943_1exon_8943_1Tribonema minus UTEX_B_3156 exonContig_50 712184..712205 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8943UTR3_8943Tribonema minus UTEX_B_3156 three_prime_UTRContig_50 710704..710832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8943CDS_8943Tribonema minus UTEX_B_3156 CDSContig_50 712184..712205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349867Trimin1|349867|estExt_Genemark1.C_Ctg_500082Tribonema minus UTEX_B_3156 polypeptideContig_50 710833..712205 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8943 ID=mRNA_8943|Name=jgi.p|Trimin1|349867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_50:710704..712205- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATTGCTGCGTTTGCACGCCTGTGGCTTCCCATCTTCAGATACGT
CGGGTTCCACTACCTCAACGCGGCGCTCGTGAGCCGCGGCTGGCGCGCGC
TCTACGCCACAGTCCACAGGGCTTTCCGTAGCCGCCTGCCGCTGCTGCCG
TGCTGCACCCTCCGCGGCCACCCGCAGAACCTGCACCTCGTCACCTCCAT
AAAGCACATGGCGTCGTCCGTGCCGCTGCTGGCATGGGCCTTTGACAACG
GCTGCCCTAGGAATAGCGTCATCCTGTGGAGCGCTGCTGCACGCGGCGAC
CTGGCGGTCTTGAAGTTTGCCCACGAGAGTGACGTGCCGTGGGGCATGGA
CTACCCGTGGGGCGCCGCCTGGCGCGCGACCGAGACGTGCAGCGCCGCCG
CGCAGCACGGCCGCGTTGAGGCGCTCCTGTGGCTGCGCGACAACGGCGCC
CCCTGGCCCGCGACAACGCTCTGCCAGGCGGCGCTTAGGGGCGGTCAGCT
AGATCTGCTCCACTGGGCATGCGCCCATGACTGCCCTTGGGGAACTCGGG
ACATCAGCAGCGCCGTGCAGCCGTCTGTCAACGGCTTCCGCGGTCCAGTG
GATCGGATACTGGCGTGCGTCGAGTGGGTGCTCGCCGATGGGTGTCCGTG
TGACGAAGAGACTATGCCGTATTGCCAGCACCTGCGAGAACGGGTGGCAC
GGGAGGCGGCAGCGGCGGCGGAGGGGGGCTCTGCTGGGAGGGCTGGAAGC
GGTGCTTAGGCTGTCAAGCGCCACCTGTGCAGCCTGTAGTAGAGCAGCTG
CGCAATCAGAGAAGCTTTGCCAGAGATTATGGAGTGGTGTGGCGCTATTG
TGCCCCTGTGGCGGGTATACACTGGAAATGAAGCATTG
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protein sequence of jgi.p|Trimin1|349867

>Trimin1|349867|estExt_Genemark1.C_Ctg_500082 ID=Trimin1|349867|estExt_Genemark1.C_Ctg_500082|Name=jgi.p|Trimin1|349867|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MVIAAFARLWLPIFRYVGFHYLNAALVSRGWRALYATVHRAFRSRLPLLP
CCTLRGHPQNLHLVTSIKHMASSVPLLAWAFDNGCPRNSVILWSAAARGD
LAVLKFAHESDVPWGMDYPWGAAWRATETCSAAAQHGRVEALLWLRDNGA
PWPATTLCQAALRGGQLDLLHWACAHDCPWGTRDISSAVQPSVNGFRGPV
DRILACVEWVLADGCPCDEETMPYCQHLRERVAREAAAAAEGGSAGRAGS
GA*
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mRNA from alignment at Contig_50:710704..712205-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8943 ID=mRNA_8943|Name=jgi.p|Trimin1|349867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1502bp|location=Sequence derived from alignment at Contig_50:710704..712205- (Tribonema minus UTEX_B_3156 )
ATGGTTATTGCTGCGTTTGCACGTAAGTGTCTTCAGGTCAGGACCGCGAT
TTACTACTTGCACGCGCACGCAGGTGCTCACTCATCTTGTATGTGGTATC
TGCTCTCCTTGCAGGCCTGTGGCTTCCCATCTTCAGATACGTCGGGTTCC
ACTACCTCAACGCGGCGCTCGTGAGCCGCGGCTGGCGCGCGCTCTACGCC
ACAGTCCACAGGGCTTTCCGTAGCCGCCTGCCGCTGCTGCCGTGCTGCAC
CCTCCGCGGCCACCCGCAGAACCTGCACCTCGTCACCTCCATAAAGCACA
TGGCGTCGTCCGTGCCGCTGCTGGCATGGGCCTTTGACAACGGCTGCCCT
AGGAATAGCGTCATCCTGTGGAGCGCTGCTGCACGCGGCGACCTGGCGGT
CTTGAAGTTTGCCCACGAGAGTGACGTGCCGTGGGGCATGGACTACCCGT
GGGGCGCCGCCTGGCGCGCGACCGAGACGTGCAGCGCCGCCGCGCAGCAC
GGCCGCGTTGAGGTGCTCGAATGGGCGCGCAGCCAGGGCGCTCCGTGGAT
GAGTGGACGTGCTGGCGAGCGGCTCACCACGGCCAGTTGAAGGTGCGGTG
GCATCCGCGTGCAGCGGCATGAGGCAACAAAGTCGCATAATCAGTGCGTG
TCACGTCGCGCCCTGCGTACAGCACTCGCCCCCAGTGATTGTAGTGAGAG
GGGCATCCGTTCAAACGCGGCGGCAGCGGTGTCTCCGCCAACCATCCATT
CACTGTCTGTCAAGCCCCCGTCTTGTGCAGCCCGTGCAGCAAAAGCTATG
CGCAATGGGTCGGCATCCATTCACTGTCTGTCAAGCCCCCGTCTTGTGCA
GCCCGTGCAGCAAAAGCTATGCGCAATGGGTCGGTTCAGTCGCCGAGGAG
GATATGGCAGTGCAAGTCGACCCTCGCGGCGCAATGCCCTGAACTTCAAG
TGAATAGTGCGGAAGTTGCCCTTCTGACGTTTCTTATCATACCGTATTAA
ACGGCCGTCGCCTCGCTGGTGCGCTGCGCTGCAGGCGCTCCTGTGGCTGC
GCGACAACGGCGCCCCCTGGCCCGCGACAACGCTCTGCCAGGCGGCGCTT
AGGGGCGGTCAGCTAGATCTGCTCCACTGGGCATGCGCCCATGACTGCCC
TTGGGGAACTCGGGACATCAGCAGCGCCGTGCAGCCGTCTGTCAACGGCT
TCCGCGGTCCAGTGGATCGGATACTGGCGTGCGTCGAGTGGGTGCTCGCC
GATGGGTGTCCGTGTGACGAAGAGACTATGCCGTATTGCCAGCACCTGCG
AGAACGGGTGGCACGGGAGGCGGCAGCGGCGGCGGAGGGGGGCTCTGCTG
GGAGGGCTGGAAGCGGTGCTTAGGCTGTCAAGCGCCACCTGTGCAGCCTG
TAGTAGAGCAGCTGCGCAATCAGAGAAGCTTTGCCAGAGATTATGGAGTG
GTGTGGCGCTATTGTGCCCCTGTGGCGGGTATACACTGGAAATGAAGCAT
TG
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Coding sequence (CDS) from alignment at Contig_50:710704..712205-

>mRNA_8943 ID=mRNA_8943|Name=jgi.p|Trimin1|349867|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_50:710704..712205- (Tribonema minus UTEX_B_3156 )
ATGGTTATTGCTGCGTTTGCACGCCTGTGGCTTCCCATCTTCAGATACGT
CGGGTTCCACTACCTCAACGCGGCGCTCGTGAGCCGCGGCTGGCGCGCGC
TCTACGCCACAGTCCACAGGGCTTTCCGTAGCCGCCTGCCGCTGCTGCCG
TGCTGCACCCTCCGCGGCCACCCGCAGAACCTGCACCTCGTCACCTCCAT
AAAGCACATGGCGTCGTCCGTGCCGCTGCTGGCATGGGCCTTTGACAACG
GCTGCCCTAGGAATAGCGTCATCCTGTGGAGCGCTGCTGCACGCGGCGAC
CTGGCGGTCTTGAAGTTTGCCCACGAGAGTGACGTGCCGTGGGGCATGGA
CTACCCGTGGGGCGCCGCCTGGCGCGCGACCGAGACGTGCAGCGCCGCCG
CGCAGCACGGCCGCGTTGAGGCGCTCCTGTGGCTGCGCGACAACGGCGCC
CCCTGGCCCGCGACAACGCTCTGCCAGGCGGCGCTTAGGGGCGGTCAGCT
AGATCTGCTCCACTGGGCATGCGCCCATGACTGCCCTTGGGGAACTCGGG
ACATCAGCAGCGCCGTGCAGCCGTCTGTCAACGGCTTCCGCGGTCCAGTG
GATCGGATACTGGCGTGCGTCGAGTGGGTGCTCGCCGATGGGTGTCCGTG
TGACGAAGAGACTATGCCGTATTGCCAGCACCTGCGAGAACGGGTGGCAC
GGGAGGCGGCAGCGGCGGCGGAGGGGGGCTCTGCTGGGAGGGCTGGAAGC
GGTGCTTAG
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