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Homology
BLAST of jgi.p|Trimin1|349849 vs. uniprot
Match: A0A836CBI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI9_9STRA) HSP 1 Score: 994 bits (2569), Expect = 0.000e+0 Identity = 678/678 (100.00%), Postives = 678/678 (100.00%), Query Frame = 1
Query: 1 MSFLDLHSDSAEARQRAYRAATEEYGEALARALHASFSALPDDNSHHWYEWGIALLEAKEEMTAKTADRHIAQKGMVVAAGVSGALLLRGTGPRSLLWSLLSLAFTAEAAATIAARRRLLERARADVKQLVAALXXXXXXXXXXXXXVAAAARMMKCAQAAAMGLRLALPMPPVARMEAAARNRRAALQLPSLRACAAEALQLLRAHVARCTSDVIAATTSAARAGPAXXXXXXXXLPPQQSPGGVLLLAEIADAEAALTEELHQFVLAVARALAASETNVSSLRAAVASVGGCLRSAAERLHAALGXXXXXXXXXXXXELAAAIASLRLSCEAAVVALYRAQVQLASPPAAAHGHXXXXXXXXXXXXXAQLAGVAQLLTAAAHAWTEQQASDLVAALEQARELSAAAXXXXXXXXIPSDAASVGSXXXXXXSGVPSISSAGAHSPPFSLGDSWIPVAQPSSPAAALYSLYESLDEAGMAEPQRSAAAGHXXXXXXXXERESFTDVLVATGGPDASPGREGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSRDELLGELSFALSSRAHALPPPRVKGLQGAPPGSPLNAAHQRSAGVAEGVSGPRLGPEEVAAXXXXXXXXDAPHGGSAQGLMSELRGRLGGEEQGDELVILCGGETDEVGSGSSDGVLVDPRT 2034
MSFLDLHSDSAEARQRAYRAATEEYGEALARALHASFSALPDDNSHHWYEWGIALLEAKEEMTAKTADRHIAQKGMVVAAGVSGALLLRGTGPRSLLWSLLSLAFTAEAAATIAARRRLLERARADVKQLVAALXXXXXXXXXXXXXVAAAARMMKCAQAAAMGLRLALPMPPVARMEAAARNRRAALQLPSLRACAAEALQLLRAHVARCTSDVIAATTSAARAGPAXXXXXXXXLPPQQSPGGVLLLAEIADAEAALTEELHQFVLAVARALAASETNVSSLRAAVASVGGCLRSAAERLHAALGXXXXXXXXXXXXELAAAIASLRLSCEAAVVALYRAQVQLASPPAAAHGHXXXXXXXXXXXXXAQLAGVAQLLTAAAHAWTEQQASDLVAALEQARELSAAAXXXXXXXXIPSDAASVGSXXXXXXSGVPSISSAGAHSPPFSLGDSWIPVAQPSSPAAALYSLYESLDEAGMAEPQRSAAAGHXXXXXXXXERESFTDVLVATGGPDASPGREGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSRDELLGELSFALSSRAHALPPPRVKGLQGAPPGSPLNAAHQRSAGVAEGVSGPRLGPEEVAAXXXXXXXXDAPHGGSAQGLMSELRGRLGGEEQGDELVILCGGETDEVGSGSSDGVLVDPRT
Sbjct: 1 MSFLDLHSDSAEARQRAYRAATEEYGEALARALHASFSALPDDNSHHWYEWGIALLEAKEEMTAKTADRHIAQKGMVVAAGVSGALLLRGTGPRSLLWSLLSLAFTAEAAATIAARRRLLERARADVKQLVAALXXXXXXXXXXXXXVAAAARMMKCAQAAAMGLRLALPMPPVARMEAAARNRRAALQLPSLRACAAEALQLLRAHVARCTSDVIAATTSAARAGPAXXXXXXXXLPPQQSPGGVLLLAEIADAEAALTEELHQFVLAVARALAASETNVSSLRAAVASVGGCLRSAAERLHAALGXXXXXXXXXXXXELAAAIASLRLSCEAAVVALYRAQVQLASPPAAAHGHXXXXXXXXXXXXXAQLAGVAQLLTAAAHAWTEQQASDLVAALEQARELSAAAXXXXXXXXIPSDAASVGSXXXXXXSGVPSISSAGAHSPPFSLGDSWIPVAQPSSPAAALYSLYESLDEAGMAEPQRSAAAGHXXXXXXXXERESFTDVLVATGGPDASPGREGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSRDELLGELSFALSSRAHALPPPRVKGLQGAPPGSPLNAAHQRSAGVAEGVSGPRLGPEEVAAXXXXXXXXDAPHGGSAQGLMSELRGRLGGEEQGDELVILCGGETDEVGSGSSDGVLVDPRT 678
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|349849|estExt_Genemark1.C_Ctg_500054 |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-10_001450.1 |
TranscriptId | 350171 |
Track | FilteredModels1 |
ProteinId | 349849 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8914 ID=mRNA_8914|Name=jgi.p|Trimin1|349849|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2251bp|location=Sequence derived from alignment at Contig_50:436907..439157- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGAGCTTCTTGGACTTGCACTCCGACTCAGCTGAGGCACGACAGCGGGC GTATCGAGCTGCCACAGAGGAGTACGGAGAAGCGCTGGCTCGCGCCCTTC ATGCCTCGTTCTCTGCGCTGCCTGACGACAACTCCCACCACTGGTACGAG TGGGGCATTGCCCTCCTGGAGGCCAAAGAGGAGATGACAGCCAAAACTGC TGATCGGCATATAGCCCAGAAAGGCATGGTCGTTGCAGCAGGCGTATCTG GCGCGCTACTGCTGCGAGGCACGGGCCCCCGCAGCCTCCTGTGGTCACTG CTGAGCCTGGCTTTCACCGCGGAAGCCGCCGCAACCATCGCAGCGCGCCG CCGCCTGCTGGAGCGCGCACGAGCGGACGTCAAGCAGCTGGTGGCGGCCC TGGAGCGCCTGGCGGGAGACATAGAATCGCTGCTCGCTGCAGTGGCCGCA GCCGCGCGCATGATGAAGTGCGCGCAGGCGGCGGCCATGGGCCTGCGGCT GGCGCTGCCGATGCCGCCGGTGGCGCGCATGGAGGCCGCCGCTCGCAACC GCCGCGCCGCGCTGCAGCTGCCGTCGCTGCGCGCGTGCGCCGCGGAGGCG CTGCAGCTGCTGCGCGCTCACGTCGCGCGCTGCACCTCTGACGTCATCGC CGCGACCACTTCTGCTGCGCGTGCCGGTCCTGCACCGGCGCCGGCCGCAG CGGCAGCGCTGCCGCCGCAGCAGTCACCCGGTGGCGTGCTGCTGCTGGCA GAGATCGCTGACGCGGAGGCGGCACTCACGGAGGAGCTGCACCAGTTCGT CCTGGCAGTCGCACGCGCACTCGCTGCATCTGAAACCAACGTATCCTCAC TGCGCGCTGCTGTCGCCAGCGTCGGCGGCTGCCTGCGCAGCGCGGCGGAG CGCCTCCACGCCGCGCTCGGCGGCGGCGCAGCGGGCGCAGCGCCGCCGCC GCCACAGGAGCTGGCGGCGGCCATAGCGAGCCTGCGGCTGAGCTGTGAGG CGGCGGTGGTGGCGCTCTATCGTGCGCAAGTGCAGCTCGCATCACCACCT GCCGCTGCCCACGGCCACGGAGATGCGGGCGCAGCGGCGACGGCGGCGGC GGCGGCGGCGCAGCTGGCGGGCGTTGCGCAGCTGCTGACGGCGGCGGCGC ACGCGTGGACCGAGCAGCAGGCGTCGGACCTCGTGGCAGCGCTGGAACAG GCTCGTGAACTGTCCGCCGCTGCCGCTGCTGCGCCCGGTGCTGCTGCCAT TCCCAGCGACGCCGCGTCCGTCGGCAGCGGTGACGGCGGCGGCGGCAGCG GCGTGCCATCCATCTCATCCGCGGGGGCGCATTCTCCGCCTTTTTCGCTG GGTGATAGCTGGATTCCTGTAGCCCAACCATCCAGCCCTGCGGCAGCCCT GTACTCGCTGTACGAGAGCCTCGACGAGGCGGGCATGGCGGAACCGCAGC GGTCCGCAGCAGCAGGGCACGCGGCAGCGGCAGCGGCGGCGGCAGAGCGT GAGAGCTTTACGGACGTGCTGGTGGCGACGGGCGGGCCTGACGCGTCGCC TGGACGCGAGGGCCGTCGCCGCGCGCGCAGCAGCAGCAGCGAGCAGCGCG GTGCCGCGTCGGCGTCGCCGCAGCGGCAGCGGCAGCAGCAGCAGCAGCGC GCCGCTGCGCGCTCGCGCGACGAGCTGCTCGGCGAGCTGAGCTTTGCGCT GAGCTCGCGCGCGCACGCGCTGCCGCCGCCGCGCGTCAAAGGCCTGCAGG GCGCGCCCCCGGGATCGCCGCTGAACGCGGCGCATCAGCGTAGCGCCGGT GTCGCGGAGGGCGTATCAGGGCCGAGGCTGGGGCCGGAGGAAGTGGCCGC GGCGGCGGCAGCGGCGGCGGCGGCGGATGCTCCGCATGGCGGCAGTGCGC AGGGGTTAATGTCTGAGTTGCGCGGCCGCCTGGGTGGGGAGGAGCAGGGG GATGAACTGGTGATACTCTGCGGCGGTGAGACCGATGAGGTCGGGAGCGG GAGCAGCGACGGCGTGCTGGTGGACCCGAGGACTTAGCAATGACGAGGGC AGGTTTTTGCTCTGTTGTTCATGTCAAAAAGTGCATTGTGCAGTGGCGCT GATAAATATTGAGGGCGCAGCAGCAGGAAGAGGGGGAGCTCGCTGTCGAG ACTGTACATAGACGGATGGTGGCAGATAGATGCAATGTAATTGGTGGGTG CAGGCAGCATGATGATACATGGAATGACGTACATACACACCCAATGGATA C back to topprotein sequence of jgi.p|Trimin1|349849 >Trimin1|349849|estExt_Genemark1.C_Ctg_500054 ID=Trimin1|349849|estExt_Genemark1.C_Ctg_500054|Name=jgi.p|Trimin1|349849|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=679bp
MSFLDLHSDSAEARQRAYRAATEEYGEALARALHASFSALPDDNSHHWYE WGIALLEAKEEMTAKTADRHIAQKGMVVAAGVSGALLLRGTGPRSLLWSL LSLAFTAEAAATIAARRRLLERARADVKQLVAALERLAGDIESLLAAVAA AARMMKCAQAAAMGLRLALPMPPVARMEAAARNRRAALQLPSLRACAAEA LQLLRAHVARCTSDVIAATTSAARAGPAPAPAAAAALPPQQSPGGVLLLA EIADAEAALTEELHQFVLAVARALAASETNVSSLRAAVASVGGCLRSAAE RLHAALGGGAAGAAPPPPQELAAAIASLRLSCEAAVVALYRAQVQLASPP AAAHGHGDAGAAATAAAAAAQLAGVAQLLTAAAHAWTEQQASDLVAALEQ ARELSAAAAAAPGAAAIPSDAASVGSGDGGGGSGVPSISSAGAHSPPFSL GDSWIPVAQPSSPAAALYSLYESLDEAGMAEPQRSAAAGHAAAAAAAAER ESFTDVLVATGGPDASPGREGRRRARSSSSEQRGAASASPQRQRQQQQQR AAARSRDELLGELSFALSSRAHALPPPRVKGLQGAPPGSPLNAAHQRSAG VAEGVSGPRLGPEEVAAAAAAAAAADAPHGGSAQGLMSELRGRLGGEEQG DELVILCGGETDEVGSGSSDGVLVDPRT* back to topmRNA from alignment at Contig_50:436907..439157- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8914 ID=mRNA_8914|Name=jgi.p|Trimin1|349849|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2251bp|location=Sequence derived from alignment at Contig_50:436907..439157- (Tribonema minus UTEX_B_3156 ) ATGAGCTTCTTGGACTTGCACTCCGACTCAGCTGAGGCACGACAGCGGGC
GTATCGAGCTGCCACAGAGGAGTACGGAGAAGCGCTGGCTCGCGCCCTTC
ATGCCTCGTTCTCTGCGCTGCCTGACGACAACTCCCACCACTGGTACGAG
TGGGGCATTGCCCTCCTGGAGGCCAAAGAGGAGATGACAGCCAAAACTGC
TGATCGGCATATAGCCCAGAAAGGCATGGTCGTTGCAGCAGGCGTATCTG
GCGCGCTACTGCTGCGAGGCACGGGCCCCCGCAGCCTCCTGTGGTCACTG
CTGAGCCTGGCTTTCACCGCGGAAGCCGCCGCAACCATCGCAGCGCGCCG
CCGCCTGCTGGAGCGCGCACGAGCGGACGTCAAGCAGCTGGTGGCGGCCC
TGGAGCGCCTGGCGGGAGACATAGAATCGCTGCTCGCTGCAGTGGCCGCA
GCCGCGCGCATGATGAAGTGCGCGCAGGCGGCGGCCATGGGCCTGCGGCT
GGCGCTGCCGATGCCGCCGGTGGCGCGCATGGAGGCCGCCGCTCGCAACC
GCCGCGCCGCGCTGCAGCTGCCGTCGCTGCGCGCGTGCGCCGCGGAGGCG
CTGCAGCTGCTGCGCGCTCACGTCGCGCGCTGCACCTCTGACGTCATCGC
CGCGACCACTTCTGCTGCGCGTGCCGGTCCTGCACCGGCGCCGGCCGCAG
CGGCAGCGCTGCCGCCGCAGCAGTCACCCGGTGGCGTGCTGCTGCTGGCA
GAGATCGCTGACGCGGAGGCGGCACTCACGGAGGAGCTGCACCAGTTCGT
CCTGGCAGTCGCACGCGCACTCGCTGCATCTGAAACCAACGTATCCTCAC
TGCGCGCTGCTGTCGCCAGCGTCGGCGGCTGCCTGCGCAGCGCGGCGGAG
CGCCTCCACGCCGCGCTCGGCGGCGGCGCAGCGGGCGCAGCGCCGCCGCC
GCCACAGGAGCTGGCGGCGGCCATAGCGAGCCTGCGGCTGAGCTGTGAGG
CGGCGGTGGTGGCGCTCTATCGTGCGCAAGTGCAGCTCGCATCACCACCT
GCCGCTGCCCACGGCCACGGAGATGCGGGCGCAGCGGCGACGGCGGCGGC
GGCGGCGGCGCAGCTGGCGGGCGTTGCGCAGCTGCTGACGGCGGCGGCGC
ACGCGTGGACCGAGCAGCAGGCGTCGGACCTCGTGGCAGCGCTGGAACAG
GCTCGTGAACTGTCCGCCGCTGCCGCTGCTGCGCCCGGTGCTGCTGCCAT
TCCCAGCGACGCCGCGTCCGTCGGCAGCGGTGACGGCGGCGGCGGCAGCG
GCGTGCCATCCATCTCATCCGCGGGGGCGCATTCTCCGCCTTTTTCGCTG
GGTGATAGCTGGATTCCTGTAGCCCAACCATCCAGCCCTGCGGCAGCCCT
GTACTCGCTGTACGAGAGCCTCGACGAGGCGGGCATGGCGGAACCGCAGC
GGTCCGCAGCAGCAGGGCACGCGGCAGCGGCAGCGGCGGCGGCAGAGCGT
GAGAGCTTTACGGACGTGCTGGTGGCGACGGGCGGGCCTGACGCGTCGCC
TGGACGCGAGGGCCGTCGCCGCGCGCGCAGCAGCAGCAGCGAGCAGCGCG
GTGCCGCGTCGGCGTCGCCGCAGCGGCAGCGGCAGCAGCAGCAGCAGCGC
GCCGCTGCGCGCTCGCGCGACGAGCTGCTCGGCGAGCTGAGCTTTGCGCT
GAGCTCGCGCGCGCACGCGCTGCCGCCGCCGCGCGTCAAAGGCCTGCAGG
GCGCGCCCCCGGGATCGCCGCTGAACGCGGCGCATCAGCGTAGCGCCGGT
GTCGCGGAGGGCGTATCAGGGCCGAGGCTGGGGCCGGAGGAAGTGGCCGC
GGCGGCGGCAGCGGCGGCGGCGGCGGATGCTCCGCATGGCGGCAGTGCGC
AGGGGTTAATGTCTGAGTTGCGCGGCCGCCTGGGTGGGGAGGAGCAGGGG
GATGAACTGGTGATACTCTGCGGCGGTGAGACCGATGAGGTCGGGAGCGG
GAGCAGCGACGGCGTGCTGGTGGACCCGAGGACTTAGCAATGACGAGGGC
AGGTTTTTGCTCTGTTGTTCATGTCAAAAAGTGCATTGTGCAGTGGCGCT
GATAAATATTGAGGGCGCAGCAGCAGGAAGAGGGGGAGCTCGCTGTCGAG
ACTGTACATAGACGGATGGTGGCAGATAGATGCAATGTAATTGGTGGGTG
CAGGCAGCATGATGATACATGGAATGACGTACATACACACCCAATGGATA
C back to topCoding sequence (CDS) from alignment at Contig_50:436907..439157- >mRNA_8914 ID=mRNA_8914|Name=jgi.p|Trimin1|349849|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2037bp|location=Sequence derived from alignment at Contig_50:436907..439157- (Tribonema minus UTEX_B_3156 ) ATGAGCTTCTTGGACTTGCACTCCGACTCAGCTGAGGCACGACAGCGGGC GTATCGAGCTGCCACAGAGGAGTACGGAGAAGCGCTGGCTCGCGCCCTTC ATGCCTCGTTCTCTGCGCTGCCTGACGACAACTCCCACCACTGGTACGAG TGGGGCATTGCCCTCCTGGAGGCCAAAGAGGAGATGACAGCCAAAACTGC TGATCGGCATATAGCCCAGAAAGGCATGGTCGTTGCAGCAGGCGTATCTG GCGCGCTACTGCTGCGAGGCACGGGCCCCCGCAGCCTCCTGTGGTCACTG CTGAGCCTGGCTTTCACCGCGGAAGCCGCCGCAACCATCGCAGCGCGCCG CCGCCTGCTGGAGCGCGCACGAGCGGACGTCAAGCAGCTGGTGGCGGCCC TGGAGCGCCTGGCGGGAGACATAGAATCGCTGCTCGCTGCAGTGGCCGCA GCCGCGCGCATGATGAAGTGCGCGCAGGCGGCGGCCATGGGCCTGCGGCT GGCGCTGCCGATGCCGCCGGTGGCGCGCATGGAGGCCGCCGCTCGCAACC GCCGCGCCGCGCTGCAGCTGCCGTCGCTGCGCGCGTGCGCCGCGGAGGCG CTGCAGCTGCTGCGCGCTCACGTCGCGCGCTGCACCTCTGACGTCATCGC CGCGACCACTTCTGCTGCGCGTGCCGGTCCTGCACCGGCGCCGGCCGCAG CGGCAGCGCTGCCGCCGCAGCAGTCACCCGGTGGCGTGCTGCTGCTGGCA GAGATCGCTGACGCGGAGGCGGCACTCACGGAGGAGCTGCACCAGTTCGT CCTGGCAGTCGCACGCGCACTCGCTGCATCTGAAACCAACGTATCCTCAC TGCGCGCTGCTGTCGCCAGCGTCGGCGGCTGCCTGCGCAGCGCGGCGGAG CGCCTCCACGCCGCGCTCGGCGGCGGCGCAGCGGGCGCAGCGCCGCCGCC GCCACAGGAGCTGGCGGCGGCCATAGCGAGCCTGCGGCTGAGCTGTGAGG CGGCGGTGGTGGCGCTCTATCGTGCGCAAGTGCAGCTCGCATCACCACCT GCCGCTGCCCACGGCCACGGAGATGCGGGCGCAGCGGCGACGGCGGCGGC GGCGGCGGCGCAGCTGGCGGGCGTTGCGCAGCTGCTGACGGCGGCGGCGC ACGCGTGGACCGAGCAGCAGGCGTCGGACCTCGTGGCAGCGCTGGAACAG GCTCGTGAACTGTCCGCCGCTGCCGCTGCTGCGCCCGGTGCTGCTGCCAT TCCCAGCGACGCCGCGTCCGTCGGCAGCGGTGACGGCGGCGGCGGCAGCG GCGTGCCATCCATCTCATCCGCGGGGGCGCATTCTCCGCCTTTTTCGCTG GGTGATAGCTGGATTCCTGTAGCCCAACCATCCAGCCCTGCGGCAGCCCT GTACTCGCTGTACGAGAGCCTCGACGAGGCGGGCATGGCGGAACCGCAGC GGTCCGCAGCAGCAGGGCACGCGGCAGCGGCAGCGGCGGCGGCAGAGCGT GAGAGCTTTACGGACGTGCTGGTGGCGACGGGCGGGCCTGACGCGTCGCC TGGACGCGAGGGCCGTCGCCGCGCGCGCAGCAGCAGCAGCGAGCAGCGCG GTGCCGCGTCGGCGTCGCCGCAGCGGCAGCGGCAGCAGCAGCAGCAGCGC GCCGCTGCGCGCTCGCGCGACGAGCTGCTCGGCGAGCTGAGCTTTGCGCT GAGCTCGCGCGCGCACGCGCTGCCGCCGCCGCGCGTCAAAGGCCTGCAGG GCGCGCCCCCGGGATCGCCGCTGAACGCGGCGCATCAGCGTAGCGCCGGT GTCGCGGAGGGCGTATCAGGGCCGAGGCTGGGGCCGGAGGAAGTGGCCGC GGCGGCGGCAGCGGCGGCGGCGGCGGATGCTCCGCATGGCGGCAGTGCGC AGGGGTTAATGTCTGAGTTGCGCGGCCGCCTGGGTGGGGAGGAGCAGGGG GATGAACTGGTGATACTCTGCGGCGGTGAGACCGATGAGGTCGGGAGCGG GAGCAGCGACGGCGTGCTGGTGGACCCGAGGACTTAG back to top
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