mRNA_8703 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|81206
Unique NamemRNA_8703
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|81206 vs. uniprot
Match: A0A835YRG3_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG3_9STRA)

HSP 1 Score: 534 bits (1376), Expect = 3.580e-191
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1 
Query:   52 MSPPPFYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDGVNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 873
            MSPPPFYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDGVNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG
Sbjct:    1 MSPPPFYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDGVNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 274
[Close]
BLAST of jgi.p|Trimin1|81206 vs. uniprot
Match: A0A835YZM2_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM2_9STRA)

HSP 1 Score: 406 bits (1044), Expect = 1.260e-140
Identity = 200/271 (73.80%), Postives = 237/271 (87.45%), Query Frame = 1 
Query:   61 PPFYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDGVNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 873
            PPFYKDLTK V+DLLTDD+SLK T+K+KHTTPH V FT ENEHKG S VAGK+QLKYAHKPSGF+LDKV +  +G  +VECSLAG+A GLKLTAK++DAIKGDVG E+VGA  A+KT+++ E TK+ +SATAAY+GVNAGGI+ AKLPGDKPAALSDYNAG++YGGTGWFTALTT+NKMATYN+SA+YAPA N+T  VLAS TPE+GAQ+V VG KY CNP T LRAK TS+GM+HAA+Q+KC +G+ +G ATE+N KDMQPKFGFNCTLG
Sbjct:    4 PPFYKDLTKVVNDLLTDDFSLKRTVKVKHTTPHNVNFTIENEHKG-SAVAGKVQLKYAHKPSGFALDKVTIAQNGAKTVECSLAGLAPGLKLTAKVDDAIKGDVGAEYVGAGFAIKTDMDVEATKMVTSATAAYEGVNAGGIISAKLPGDKPAALSDYNAGVAYGGTGWFTALTTTNKMATYNLSATYAPAKNVTAVVLASLTPETGAQSVVVGTKYVCNPNTTLRAKATSDGMLHAAVQHKCTQGLIIGAATEVNAKDMQPKFGFNCTLG 273
[Close]
BLAST of jgi.p|Trimin1|81206 vs. uniprot
Match: D8LG27_ECTSI (Voltage dependent anion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG27_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 7.170e-60
Identity = 114/272 (41.91%), Postives = 155/272 (56.99%), Query Frame = 1 
Query:   67 FYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDG---VNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 873
            FY DL K   D+L+DDY+LK TLK+KHTTPH V  TA++EH  + GV G L+ K+ H  SG S+DK  L PDG   +E S   VA+ +KL AK+ND +KG+V  E    + + +  ++ E   + +S   A      V A G  I   P  K +AL  Y+ G + GG+ W  +LT +N M T+N S  Y    NL  +V+A TTPE    +   G++YQCNP T +RAKM S G+V A   N+C + V++ V       D  PKFG  C LG
Sbjct:   53 FYNDLNKVARDILSDDYNLKRTLKMKHTTPHGVTVTAKSEH--SKGVNGALEAKFFHAKSGVSIDKAKLNPDGSMGLEASRRDVAKNVKLVAKVNDVLKGEVSMEHTVGKSSSRATLDVEGNWMRTSTCMAVGSSLLVGAQGDFIVGAP--KDSALKSYSVGAATGGSRWGASLTCTNAMQTFNASGYYILQPNLVGSVMAVTTPEKSETSFEAGVRYQCNPKTTVRAKMNSNGLVQACAVNRCADKVAITVTAAAAKNDTTPKFGLLCALG 320
[Close]
BLAST of jgi.p|Trimin1|81206 vs. uniprot
Match: A0A6H5L9E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E4_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.520e-48
Identity = 99/248 (39.92%), Postives = 137/248 (55.24%), Query Frame = 1 
Query:  139 LKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDG---VNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 873
            +KHTTPH V  TA++EH  + GV G L+ K+ H  SG S+DK  L PDG   +E S   +A+ +KL AK+ND +KG+V  E    + + +  ++ E   + +S   A      V A G  I   P  K +AL  Y+ G + GG+ W  +LT +N M TYN S  Y    NL  +V+A TTPE    +   G++YQCNP T +RAK+ S G+V A   N+C + V+V V       D  PKFG  C LG
Sbjct:    1 MKHTTPHGVTVTAKSEH--SKGVNGALEAKFFHAKSGVSIDKAKLNPDGSMGLEASRRDIAKNVKLVAKVNDVLKGEVSMEHTVGKSSTRATLDVEGNWMRTSTCMAVGSSLLVGAQGDFIVGAP--KDSALKSYSVGAATGGSRWGASLTCTNAMQTYNASGFYILQPNLVGSVMAVTTPEKSETSFEAGVRYQCNPKTTVRAKVNSNGLVQACAVNRCADKVAVTVTAAAAKNDTTPKFGLLCALG 244
[Close]
BLAST of jgi.p|Trimin1|81206 vs. uniprot
Match: A0A1Z5KDV9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDV9_FISSO)

HSP 1 Score: 98.6 bits (244), Expect = 3.570e-20
Identity = 86/271 (31.73%), Postives = 139/271 (51.29%), Query Frame = 1 
Query:   61 PPFYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEF-VGARMALKTEVNTELTKITSSATAAY-DGVNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKD---MQPKFGF 858
            P  + D+ K V D+L DDY+ K +LK K +    VA T E E      +A K+  K+++    F++DK  L  DGG+++E S+  +   +KL+ K +     D+G ++ +G+  A        ++K+++SA  A   G+  GG  +  L G K   L+ +N G SY     FT+L  S+K +TY+VS  Y    +LT A L + + E+    V VG  Y+     +L+AK+ S+G+VHA +       VS+  +  M   D    +P FG 
Sbjct:   51 PTKFADIDKPVKDILNDDYTSKVSLKCK-SNAGPVAVTIETERGATGALASKIGTKFSYAK--FNVDKGQLTADGGSALETSMK-LTPDIKLSFKTSKG--ADLGIDYTLGSFYATGVLDVQNMSKVSTSACYALPSGLKVGGDAVYSLSG-KTTGLAGFNVGASYAKGPIFTSLV-SSKFSTYSVSVGYNVNQDLTIASLTTHSAENRCNLVGVGASYKNPVIGMLKAKVGSDGVVHACLVKDIAPKVSLTASGSMLATDPSTFKPGFGI 313
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|81206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YRG3_9STRA3.580e-191100.00Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
A0A835YZM2_9STRA1.260e-14073.80Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
D8LG27_ECTSI7.170e-6041.91Voltage dependent anion channel n=1 Tax=Ectocarpus... [more]
A0A6H5L9E4_9PHAE1.520e-4839.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z5KDV9_FISSO3.570e-2031.73Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:403095..409218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|81206|CE81205_418
KEGG TC1.B.8.1
BRITEko00000,ko00001,ko02000,ko03029
KEGG Pathwayko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05166,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05166
KEGG koko:K15040
DescriptionEukaryotic porin
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D161@1|root,2SGUK@2759|Eukaryota
Evalue4.67e-61
Seed ortholog2880.D8LG27
Hectar predicted targeting categoryother localisation
TranscriptId81528
TrackFilteredModels1
ProteinId81206
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|81206gene_8703Tribonema minus UTEX_B_3156 geneContig_61 403095..409218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|81206Trimin1|81206|CE81205_418Tribonema minus UTEX_B_3156 polypeptideContig_61 403146..409183 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8703_1exon_8703_1Tribonema minus UTEX_B_3156 exonContig_61 403095..403148 +
exon_8703_2exon_8703_2Tribonema minus UTEX_B_3156 exonContig_61 403491..403533 +
exon_8703_3exon_8703_3Tribonema minus UTEX_B_3156 exonContig_61 404258..404505 +
exon_8703_4exon_8703_4Tribonema minus UTEX_B_3156 exonContig_61 407183..407328 +
exon_8703_5exon_8703_5Tribonema minus UTEX_B_3156 exonContig_61 407940..408233 +
exon_8703_6exon_8703_6Tribonema minus UTEX_B_3156 exonContig_61 409093..409218 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8703UTR5_8703Tribonema minus UTEX_B_3156 five_prime_UTRContig_61 403095..403145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8703CDS_8703Tribonema minus UTEX_B_3156 CDSContig_61 403146..403148 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8703UTR3_8703Tribonema minus UTEX_B_3156 three_prime_UTRContig_61 409184..409218 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8703 ID=mRNA_8703|Name=jgi.p|Trimin1|81206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=911bp|location=Sequence derived from alignment at Contig_61:403095..409218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGAAGGCGAGAGCTTTAGATCAGCAAGTCAGAGACACGCCAGCATCCGC
CATGTCTCCTCCTCCGTTTTACAAGGATCTCACCAAAGCCGTCTCAGACC
TCCTGACGGACGACTACAGCTTGAAGAACACGCTCAAGCTCAAGCACACG
ACACCCCACGCGGTCGCGTTCACCGCGGAGAACGAGCACAAGGGCGCCAG
CGGCGTGGCGGGCAAGCTCCAGTTGAAGTACGCACACAAGCCCTCGGGGT
TCTCGCTGGATAAGGTGGTGCTCGGCCCCGATGGCGGCACCAGTGTGGAG
TGCTCTCTGGCGGGGGTGGCGGAGGGGCTCAAGCTCACTGCCAAGATCAA
CGACGCCATCAAGGGCGATGTCGGCACGGAGTTTGTAGGCGCGCGCATGG
CCCTCAAGACGGAGGTCAACACGGAGCTCACCAAGATCACGTCCTCCGCC
ACGGCCGCATACGACGGTGTCAACGCTGGTGGCATTGTCATCGCAAAGCT
GCCAGGCGACAAGCCCGCAGCGCTCAGCGACTACAACGCGGGCCTCTCGT
ACGGCGGCACGGGCTGGTTCACGGCCCTCACAACCTCCAACAAGATGGCC
ACGTACAACGTCAGCGCGAGCTACGCGCCCGCCGCCAACCTCACGACTGC
GGTGCTCGCGTCTACCACGCCCGAGAGCGGCGCGCAGACGGTTACTGTGG
GGTTGAAGTACCAGTGCAACCCCGCGACGGTGCTGCGCGCCAAGATGACC
AGCGAGGGCATGGTGCACGCCGCCATGCAGAACAAGTGCTGCGAAGGCGT
CAGCGTCGGCGTCGCCACAGAGATGAACACCAAGGACATGCAGCCCAAGT
TTGGCTTCAACTGCACGCTGGGATAGACACACTGCACCATCGCCGCCCCA
CACGCGTGCTT
back to top

protein sequence of jgi.p|Trimin1|81206

>Trimin1|81206|CE81205_418 ID=Trimin1|81206|CE81205_418|Name=jgi.p|Trimin1|81206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
MSPPPFYKDLTKAVSDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGAS
GVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKIN
DAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDGVNAGGIVIAKL
PGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTA
VLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGV
SVGVATEMNTKDMQPKFGFNCTLG*
back to top

mRNA from alignment at Contig_61:403095..409218+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8703 ID=mRNA_8703|Name=jgi.p|Trimin1|81206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6124bp|location=Sequence derived from alignment at Contig_61:403095..409218+ (Tribonema minus UTEX_B_3156 )
GCGAAGGCGAGAGCTTTAGATCAGCAAGTCAGAGACACGCCAGCATCCGC
CATGGTGAGTAGAACGACGAGACGTTTGCGCACATGCCTGCTGCATCATC
GCATGTGTGCCGCGCATCTTCATGCGTGGTTCCCTTCAAGTTGCCTCGAG
CTTTACGGCGACCGTGTACATTTGTCATGCTGACTCCCGCCGGCACTGTT
TGCGCTTTCATGCTGTAGTAGAGACCCATATAGCCTTGATGTGGCCGCAG
CACTGCGGCGATCGCTATGTTCACGTCCCTACCTTGGCATTTGAACCAAT
CGCCGTCCTGAGCTTATCAGTTCAGGTGCGGTATCATGTTAATTGTCCTC
CGCTGCCTTTGGCGCTGCTGCCTGTCCTACGGCGTGACCATCACAGTCTC
CTCCTCCGTTTTACAAGGATCTCACCAAAGCCGTCTCAGGTAAACAGTGT
GTGCACGAACTCGTCATCCTTGTCGGCGTTAAGTGCGCAGCTTGATTCAT
TCTGGGTTTAGGCAGTGTAATGCCAGGTAAGCAGCGCTCTGTGCATTTGT
ATTGTTACCGTCACTAGCAATGTGACATTCAGACTTGCTGCTATTTTGGG
GAAAGCTACTCGGTCTCCGTGCCTCGGCCTGCGTGTGTGCGAATGCGAGC
TGTCGTGACGAGCACGCGGAAGCTGGCACTGCGTGAGGCAGATCACCAAC
CAAACATTTGATGGCTAGCTGACTCAGACGGGCTGCTGGCCTGCACGTGT
TCTATCTTATGAATTGTTGCATGAATGGTGTGCGTTTGCTCTCGCACCAC
GCTGCACTTCTTACTGCTGCAATAGCATCATCAAGATCGTCCCGCTTGCC
TATGTCAAATGATATATCTTTTGTAGGCTGTTATTGACCGGTTGTCTTTC
TATTATTTATCAGTGATTTTTCGCAAAGAAGGTGCTGTTTCGGGCCTTAG
TTGCTCCATTTGCTGTTGGCTCTCCAGGCATTATTCTTGGTTTTCAAGGT
TGTGGTAGGGATCGAGAGTGCCCCGACAGGGAAAAGTTGCAGCCTCAACA
ACACGCTCACGCTGCCCGCCAGCACCATTTCTTCCTTCTTCAACTTCAGA
GTATGACACCAGAACTTCACCTCCTGTCACTGTCTCCACCCCCATGATGC
CGCCTATCCGCAGACCTCCTGACGGACGACTACAGCTTGAAGAACACGCT
CAAGCTCAAGCACACGACACCCCACGCGGTCGCGTTCACCGCGGAGAACG
AGCACAAGGGCGCCAGCGGCGTGGCGGGCAAGCTCCAGTTGAAGTACGCA
CACAAGCCCTCGGGGTTCTCGCTGGATAAGGTGGTGCTCGGCCCCGATGG
CGGCACCAGTGTGGAGTGCTCTCTGGCGGGGGTGGCGGAGGGGCTCAAGC
TCACTGCCAAGGTGAGTTCGATACTTCAAGTACTTGAAGTGGTGTATTTT
CATGGGTTGTCGCTCGGCAGCGAGCGTGGAGTGCTCTCTGGCGGGGGTGG
CAGAGGGGCTCAAGCTCACTGCCAAGGTGAATACTTCAAGTACTTGAAGT
TGGTGTTGATTTTATGGAGTTGTCGCTCAGCAGCGCGCGGAAACATTCAA
ACGATCGGCGCCAAACCTGCTACCAGGTTTGTCTACCCCTTGTCAGATAA
TGATACACGGTTGCACTGTGCCTCGCTAGCGGGGGTTGGGTTGTGAAGTG
GCTCAAGCTCGCTGCCAAAGCTGAGTACTGCAAGTGCTTGAAGTGGTGCA
CTTGGCAGAATTCGCGTCATTGGACTGCAGAAGTAATGCGACGTAAGGAA
ATTAGGGCGTAATGCGTACATAATCAGTGGCGGAGGGGCTCGCTCCATGC
AAAAGGAAATACTTGAGGTGGCGTGCTGTGCGGAAAACGGGACCACTTGA
AGTGTGAAATTTGGACCGAAGTCGTGTGTTTCAAAGCATCTGCACGAATG
TAGGTTTGCGCATACTTTGAAGTTCGCGCTTCGGAGTATGTCACAGTACT
TCAACGTCGTAAGCAGTCATTGTGTGAGTGTAGCATGTAGATACATGCTG
CTGGGCTGTGAACGCGCGCGCGCCCTTGCGCAGCAGTGCACAGCAGCAGC
AGCGCTCAGACGACATCACTACATCACACGCGTTTGCATACTTCAACTAC
ACAAGTTGGCGCTGATCTCAAAAAAGCGTGGTGCCGCAGTGGCCACATCA
GCATGAGTGCATGGCTTGTATTCGAATGTACCAGTTTGGTGCCCACCTTC
AAGTGGTGACGCTCACTGCCTCAAGTTGATGAACGCTGCCTTGACACTTG
CGCCGCCTGATGGCTAATAATAATGGTGGGCCTTTGGCGTGGTGCTTGTG
GCTTGAATGAGAGATTGGAGTCGCTGCCATTGCCCCTCGATACAGTAAGT
ATGTAACTGTAAGTGCTATTAGTGTGGCAATCTGAGAAGACGCAGAAGAT
CACAGCGTATTATGTAACAAGTGCTGTCGGTGTCGCAATTTGAGAAGATT
ACAGCAAATTATGTACTTGTAAGTGCTGTTTGTGTGGCAATCTGAGAAGA
TCCAGAACATCAAAACAGTTAGAATGAATACTAAACTTCAATTGTGTAGT
CAACATTTGGCGTTGCCACAGGCTCACAGCAACGGCAGACAAGAACGGAA
GTACAGAGCGGGCCTGGTTTACAAGTTTCTGCAGGGCCCAGTGCAAGGGC
TTAAAGTGTCTGCCAAGGTGACTGCAGCATCTGCGGAGCCTCGGGCTTTG
CGTTGCTTGCAATTTCTCTAGGTCACCGCTGAGGGTCAGGTTATGTAGGG
TTAGGATTAGTGGGTAAGTAGTTTATGATCCTAAAGCTCTCAGGATGTAG
CACAGCTGCACTTGCCGCAGTTCAACCACCGTGCCTCAAACTCCGCTCGA
TTGTAGTGTTGGCTCAGCCCCCAGCATCGACTTGTCATTAGGATTAGGGT
TGAATTTAGTGTCACAAGCGGATGTAGTGATAGCAGACGTGCGCACGTGA
CATGGAACTTGAAGGCATGCAACTCTGAAAGTACGCACCTCGCGTACACC
TTGAGTACACTTTGGGTACACCTTGAACACACCACTTTGGCTGCAACACG
CTCGCACAGAATTGGCAAACAGTACTGCCAAACACACACTTGCTGCTGTG
TGTACTCTCAACCGTTGTGATACCGCTAGCCTTGTGACCTGCCCATGGAT
GTCTAATGCTGTGGGCAATGCGCATGTAGGTGTACGCCTGGGATGCATTG
TCGGTACGCATGGGGCTCGCCCTGTTGATCATCACCACCACCGCTTTACG
ACTACAGTGGGGTTCGAGTTAACATCATTTTAGGGTCAGGTCACCCTGGC
CCCCAGCCCTCGCGTTCTTTGGAGGTGTCAGGCAGATGCCATCTCTGTCG
CGCTGATCAACGTGCATCCCTCCAATGCCAGCAAGGACAATGTCGGCGTA
GAGTTTGTTGTTTGCGAGGCAACCAACCTGACCCTACCTTAAACCCCCAG
CTAACCCTAACCTCGCTCACCGACGACAAACATGTTCATTGCTGTATTCC
GCACTCGCCATACCCCTCATTTGCGAACGGATGACGTCGTCAACTTTGTA
TGTTCAACCGCATGCAGTTCAATGGTGCCATCAAGGGCGGTGTTGGCACA
GAGCGGTAGGGGTTAAAGTTGACCCAACCGCAGCCCTTTACACCACGCCT
TCAGAACAACTGATGACATGTTTCACGCGTTGCCATCTTCAACGCTGTGA
TTTCAGGTTAAACCAATTCCTGACCGTACCTTCTACCCTAACCTACCCTA
CCCTCATTCACAAATGACAGTATGTTCGTTGCTGTGTGTTTCCAACTTGC
GGTACCCCTCATTCACAAACTTCAACTCTGTATTATCAACTCTGTCTCTT
CAACTTTGTACCTACTCCGGCGCGCAGATCAACGATGCTCAACATCGCTG
TCTTCAACGATGTGTTTGATTTGAGTTTGTAGGTAGTAGAAAGTTAGCAG
GACTTGAAGTTGACCCACCTCCTTTTGGAGACACCGATGATAACTTTAAC
TTTGCTATTTTCAACTTTGCATCTTCAACTGCATGCAGATCAACGACGCC
ATCAAGGGCGATGTCGGCACGGAGTTTGTAGGCGCGCGCATGGCCCTCAA
GACGGAGGTCAACACGGAGCTCACCAAGATCACGTCCTCCGCCACGGCCG
CATACGACGGTGTCAACGCTGGTGGCATTGTCATGTGAGCACACGCCTAG
ATATCTACGTATGAGTAGTTCTTTGCTACAACGATGCGCCTGTGATGCCG
GCGGCATTGTCACGTGAGCACACGCCTACGCATCTACTCAGGATGCCTTC
AATGTCAGTGGCATTGTCATAAGCGCACACGCCTAGGCATCTGCAAGGTT
TTATGCTACAGCATAGTTACGGTGGCGTCAACGCCTGCGGCATTGTCATG
CGACATCCAACGACGCCAAGCTCCCGGGCGGCAGCCCCGCAGCTCTCAGC
GACTACAACGTCGCAGCACACATACTGGCCTTACAGACACTGCCTTCACC
TTCATCTCCCATCGCGTCACCATAAACACTTAATGGATGAGTCTCATTCG
CTGCTGCCTCACCCGCTGCGCTGCTGCCAAACAGCGCCAAGGTCCCCGGC
GACAAGCCAGCAGCCCTCAGCGACTACAGCCATAGTATATGCGCATTTGC
CTTGCACACACCGCCTTCGCCTCGACCGCTTGCCATCACGCCAACAGCAC
CGAACACTCACAGGAAGACCCATACTTAGGGTGAGGAGTCGAGTCTTACT
TTGTTGCTGCCTCATGCGCCACCACTGCGCTGCGGTGTCAAACAGCGCAA
AGCTGCCAGGCGACAAGCCCGCAGCGCTCAGCGACTACAACGCGGGCCTC
TCGTACGGCGGCACGGGCTGGTTCACGGCCCTCACAACCTCCAACAAGAT
GGCCACGTACAACGTCAGCGCGAGCTACGCGCCCGCCGCCAACCTCACGA
CTGCGGTGCTCGCGTCTACCACGCCCGAGAGCGGCGCGCAGACGGTTACT
GTGGGGTTGAAGTACCAGTGCAACCCCGCGACGGTGCTGCGCGCCAAGAT
GACCAGCGAGGGCATGGTGCACGCCGCCATGCAGAACAAGTGAGTGCAGG
ATACTTGAAGTACTTGAACTTCAACTTTTTGGGTCACATCTTGCGATTGA
TTGGTCATATATCTAGAAGCATCAGGCCCAAATGACCAGCGAGGGCATGG
TGCACGCCGCCATGCAGAATAAGTGAGTGTACTTTGAATTATGATACCTG
GGCTTCATTGTTTTGGGTTACCATCTCTTCGATCATTTGGTCATGCCGAG
AGCGGCGCGCGGTGCGTCACCGTCAGTTGAAGTACCAGTGCAACCCCGCG
ACGGTGCTGCGCGCTAAGATGACCAGCGAGGGCATGGTGCACGCCGCCAT
GCAGAACAAGTGAGTGCAGGATACCTGAAGTACTTGAACTTCAACTTTTT
GGGTCACATCTTGCGATTGATTGGTCATATATCTAGAAGCATCAGGCCCA
AATGACCAGCGAGGGCATGGCGCACGCCGCCATGCAGAACAAGAGAGTGT
ACTTTGTAGTATGATACCCGGACTTCATTGTTTGGGTCGATACTGTCAAT
TGGTTCGTCATATACAAGAATCATGCCAAGAATCACCAGCGATGGCATGG
CGCACGCCGCCACGCAGAGAAGGTGCTCATTGACAAAAACTTCAACTTCA
TGGGTCATCTCTCCAGCTTTTTTCTGCAAGGCACCACTGTTGGTTGCTTG
GGTCCTGTGGTCGGTGCCATATTTTCCAAGTACCAACGGTACTCTACTAT
GTGCTTGCATGTCCTCAAGATGATAATGTGCGAACGAAGCCCCCAAGCTC
ACGCTGAACACGTTTTCCTGTGCTACCTTATTGTGTGATGCTCAGTTTGA
CACATGCTTTCCTGCGCTACCTACCTACCCCATTGTGGCGATGCTCAGGT
GCTGCGAAGGCGTCAGCGTCGGCGTCGCCACAGAGATGAACACCAAGGAC
ATGCAGCCCAAGTTTGGCTTCAACTGCACGCTGGGATAGACACACTGCAC
CATCGCCGCCCCACACGCGTGCTT
back to top

Coding sequence (CDS) from alignment at Contig_61:403095..409218+

>mRNA_8703 ID=mRNA_8703|Name=jgi.p|Trimin1|81206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_61:403095..409218+ (Tribonema minus UTEX_B_3156 )
ATGTCTCCTCCTCCGTTTTACAAGGATCTCACCAAAGCCGTCTCAGACCT
CCTGACGGACGACTACAGCTTGAAGAACACGCTCAAGCTCAAGCACACGA
CACCCCACGCGGTCGCGTTCACCGCGGAGAACGAGCACAAGGGCGCCAGC
GGCGTGGCGGGCAAGCTCCAGTTGAAGTACGCACACAAGCCCTCGGGGTT
CTCGCTGGATAAGGTGGTGCTCGGCCCCGATGGCGGCACCAGTGTGGAGT
GCTCTCTGGCGGGGGTGGCGGAGGGGCTCAAGCTCACTGCCAAGATCAAC
GACGCCATCAAGGGCGATGTCGGCACGGAGTTTGTAGGCGCGCGCATGGC
CCTCAAGACGGAGGTCAACACGGAGCTCACCAAGATCACGTCCTCCGCCA
CGGCCGCATACGACGGTGTCAACGCTGGTGGCATTGTCATCGCAAAGCTG
CCAGGCGACAAGCCCGCAGCGCTCAGCGACTACAACGCGGGCCTCTCGTA
CGGCGGCACGGGCTGGTTCACGGCCCTCACAACCTCCAACAAGATGGCCA
CGTACAACGTCAGCGCGAGCTACGCGCCCGCCGCCAACCTCACGACTGCG
GTGCTCGCGTCTACCACGCCCGAGAGCGGCGCGCAGACGGTTACTGTGGG
GTTGAAGTACCAGTGCAACCCCGCGACGGTGCTGCGCGCCAAGATGACCA
GCGAGGGCATGGTGCACGCCGCCATGCAGAACAAGTGCTGCGAAGGCGTC
AGCGTCGGCGTCGCCACAGAGATGAACACCAAGGACATGCAGCCCAAGTT
TGGCTTCAACTGCACGCTGGGATAG
back to top