mRNA_8698 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132963
Unique NamemRNA_8698
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A0A835YN26_9STRA (A1 cistron-splicing factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN26_9STRA)

HSP 1 Score: 270 bits (689), Expect = 9.150e-92
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLERC 384
            GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLERC
Sbjct:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLERC 128          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.750e-41
Identity = 67/128 (52.34%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLERC 384
            GG+ V L  PPG+  GID + ++TGP F+G+KMIP GLH  ++G  E E QG+FF    GSV    WD +AEDLV     LP GAL  L  +VLR E+D +LGP+P E  AAW NL+NC+++ VLERC
Sbjct:   13 GGYFVALGVPPGVEFGIDLKSYKTGPQFQGVKMIPPGLHFAHFGTGEGEKQGIFFRSSVGSVAATQWDTSAEDLVDAQTRLPDGALRALRESVLRLEMDKSLGPHPFEQQAAWSNLTNCVTDSVLERC 140          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.710e-40
Identity = 68/128 (53.12%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLERC 384
            GG+ V L  PPG+  GID + ++TGP FKG+KMIP GLH  ++G  E E QG+FF   AGSV    WD +AEDLV     LP GA+  L  +VLR E+D +LGP+P E  AAW+NL+NC+++ VLERC
Sbjct:   18 GGYFVALGVPPGVEFGIDLKSYKTGPQFKGVKMIPPGLHFTHFGTGEGEKQGIFFRSSAGSVAATQWDTSAEDLVDAQTCLPDGAVRALRESVLRLEMDKSLGPHPFEQQAAWLNLTNCVTDSVLERC 145          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A0A8J1XTY2_OWEFU (Protein AAR2 homolog n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XTY2_OWEFU)

HSP 1 Score: 97.4 bits (241), Expect = 1.580e-21
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYY------GLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLE 378
            G  LV+LD PPG   GID     TGPNFKG+KMIP G+H +YY      G   +   G F+  +A  V V  WD   ED+  G   + Q  +  + +   + ELD  LG YP E+   WV+++N I+E V+E
Sbjct:   13 GAVLVLLDVPPGTEFGIDYNAWNTGPNFKGVKMIPPGIHFVYYSARSGRGSDVAPRSGFFYNFKAKEVLVKKWDRLQEDITSG--GVSQEEVERIQSN--KKELDRYLGAYPYESYKKWVSMTNHITEPVME 140          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A0A7S0Q5G2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5G2_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 5.890e-21
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    4 GFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLER 381
            G +V    P     G+D R +  GP+FKGMKMIP GLHL+  G SE E  G+F  + AG V VL WD  AE   H     P      +   V + ELDANLGPYP+ + A W  LS+ +++ VL R
Sbjct:   22 GSIVCEVVPQSHEFGVDLRTYAIGPSFKGMKMIPPGLHLVVSG-SELESVGLFVRLLAGEVCVLEWDVQAEMPRH----TPVAEANAVAERVRKLELDANLGPYPLNSHAQWQALSSHLNDDVLAR 142          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: F7BCP7_MONDO (Protein AAR2 homolog n=6 Tax=Metatheria TaxID=9263 RepID=F7BCP7_MONDO)

HSP 1 Score: 95.1 bits (235), Expect = 1.340e-20
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYY--------GLSES-EHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLER 381
            G  +V LD P G   GIDC   Q GP F+G+KMIP G+HL++Y        G  E+    G F  ++   +++L WDA+ E+L   D + P     E   A L+ ELD  LGPYP +    WV+LSNC+SE  ++R
Sbjct:   13 GATVVALDVPVGTEFGIDCSSWQVGPRFRGVKMIPPGVHLVHYSAAGRSPTGTRETGPRTGFFVTLQPRGLRLLRWDASREEL---DLSPPPEEQLEAARANLQ-ELDRFLGPYPYDRLKKWVSLSNCLSEETVQR 144          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: UPI001C3521BB ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C3521BB)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-20
Identity = 52/132 (39.39%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYY--------GLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERV 372
            G FLV+L  P G  LGIDC+  Q GP FKG+KMIP GLH L+Y        G       G+F  ++   + +  WD   EDL   D +  Q             +LDA LGPYP E    WV+L++ +SE V
Sbjct:   10 GAFLVLLGVPQGTELGIDCKSWQVGPRFKGVKMIPPGLHFLHYCSVNKPSCGGEIGPKTGLFITLKPKEILLANWDPKEEDL---DFSASQNEEEVSRIRANLRDLDAFLGPYPYEVMRKWVSLTDRLSEEV 138          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A0A7N4P721_SARHA (Protein AAR2 homolog n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4P721_SARHA)

HSP 1 Score: 94.0 bits (232), Expect = 3.560e-20
Identity = 56/137 (40.88%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYY--------GLSES-EHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLR-GELDANLGPYPIEAGAAWVNLSNCISERVLER 381
            G  +V LD P G   GIDC   Q GP F+G+KMIP G+HL++Y        G  E+    G F  +R  ++++L WDAA E+L     +L      +L AA  R  ELD  LGPYP +    WV+LS+C+SE  + R
Sbjct:   13 GATVVALDVPEGTEFGIDCGSWQVGPRFRGVKMIPPGVHLVHYSAAGRGPAGARETGPRTGFFVTLRPRALRLLRWDAAREEL-----DLSPPPEEQLAAARARLQELDRFLGPYPYDLLKKWVSLSSCLSEEAVRR 144          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A7RIW5_NEMVE (Protein AAR2 homolog n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RIW5_NEMVE)

HSP 1 Score: 92.4 bits (228), Expect = 1.020e-19
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESE-----HQGMFFEVRAGSVQVLCWDAAAEDLVH---GDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERVLER 381
            G F++ LD P G   GIDC   + GP FKG+KM+P G+H ++Y     E       G F   + G + V  WD A EDLV+    +++L +  L          ELD  LGPYP E    W++L++ IS  +L R
Sbjct:   13 GAFILCLDVPQGTEFGIDCNSWEVGPRFKGVKMVPPGIHFVFYSAVNREGNAAPRTGFFCVTKKGDIVVRKWDPAIEDLVNEKTSEEDLKKYRLG-------MKELDTYLGPYPFENHKKWLSLTSHISANILAR 140          
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Match: A0A8C5E9K7_9TELE (Protein AAR2 homolog n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5E9K7_9TELE)

HSP 1 Score: 92.4 bits (228), Expect = 1.330e-19
Identity = 55/135 (40.74%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    1 GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYY--------GLSESEHQGMFFEVRAGSVQVLCWDAAAEDL---VHGDKNLPQGALAELTAAVLRGELDANLGPYPIEAGAAWVNLSNCISERV 372
            G  LV+LD P G  LGIDC++ + GP FKG+KMIP GLH LYY        G       G+F  V+   V +  WD   EDL      D+       A L       ELD +LGPYP E    WV+L++ ISE +
Sbjct:   21 GATLVLLDVPKGTELGIDCKVWKVGPLFKGVKMIPPGLHFLYYSSVNSPTCGSEIGPRTGLFLSVKPKDVILAKWDQKEEDLDFSASQDEEQVNRIRANLR------ELDPHLGPYPFEVLRKWVSLTDRISEEM 149          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132963 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YN26_9STRA9.150e-92100.00A1 cistron-splicing factor (Fragment) n=1 Tax=Trib... [more]
A0A6H5JER9_9PHAE7.750e-4152.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCU7_ECTSI1.710e-4053.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J1XTY2_OWEFU1.580e-2140.15Protein AAR2 homolog n=1 Tax=Owenia fusiformis Tax... [more]
A0A7S0Q5G2_9EUKA5.890e-2143.65Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
F7BCP7_MONDO1.340e-2040.44Protein AAR2 homolog n=6 Tax=Metatheria TaxID=9263... [more]
UPI001C3521BB2.030e-2039.39(large yellow croaker) hypothetical protein n=1 Ta... [more]
A0A7N4P721_SARHA3.560e-2040.88Protein AAR2 homolog n=1 Tax=Sarcophilus harrisii ... [more]
A7RIW5_NEMVE1.020e-1937.04Protein AAR2 homolog n=2 Tax=Nematostella vectensi... [more]
A0A8C5E9K7_9TELE1.330e-1940.74Protein AAR2 homolog n=1 Tax=Gouania willdenowi Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:381826..382956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132963|gw1.61.33.1
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko03041
KEGG ModuleM00151,M00152,M00428
KEGG Pathwayko00190,ko01100,ko02020,ko03013,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05416,map00190,map01100,map02020,map03013,map04260,map04714,map04932,map05010,map05012,map05016,map05416
KEGG koko:K00411,ko:K03260,ko:K13205
EC1.10.2.2
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
Descriptionspliceosomal tri-snRNP complex assembly
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3937@1|root,KOG3937@2759|Eukaryota
Evalue2.8e-41
Seed ortholog2880.D8LCU7
Hectar predicted targeting categoryother localisation
TranscriptId133285
TrackFilteredModels1
ProteinId132963
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132963gene_8698Tribonema minus UTEX_B_3156 geneContig_61 381826..382956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132963Trimin1|132963|gw1.61.33.1Tribonema minus UTEX_B_3156 polypeptideContig_61 381826..382956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8698_2exon_8698_2Tribonema minus UTEX_B_3156 exonContig_61 381826..382140 -
exon_8698_1exon_8698_1Tribonema minus UTEX_B_3156 exonContig_61 382888..382956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8698CDS_8698Tribonema minus UTEX_B_3156 CDSContig_61 382888..382956 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8698 ID=mRNA_8698|Name=jgi.p|Trimin1|132963|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_61:381826..382956- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGGCTTTCTTGTGATTCTGGACACTCCGCCAGGGCTTCATTTGGGCAT
TGACTGCAGGCTGCACCAGACGGGCCCCAACTTCAAGGGCATGAAGATGA
TCCCGCAGGGCCTCCACCTCCTCTACTACGGCCTCTCGGAGTCGGAGCAC
CAGGGAATGTTCTTCGAGGTTCGCGCGGGTTCCGTGCAGGTTCTCTGCTG
GGACGCCGCCGCGGAGGACCTCGTTCACGGCGACAAGAACCTGCCGCAGG
GGGCGCTGGCGGAGCTCACCGCAGCAGTGCTCAGGGGCGAGCTGGACGCG
AACCTGGGTCCGTACCCGATTGAGGCGGGCGCGGCGTGGGTGAATCTCAG
TAACTGCATTTCGGAGAGGGTGCTGGAGAGGTGT
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protein sequence of jgi.p|Trimin1|132963

>Trimin1|132963|gw1.61.33.1 ID=Trimin1|132963|gw1.61.33.1|Name=jgi.p|Trimin1|132963|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
GGFLVILDTPPGLHLGIDCRLHQTGPNFKGMKMIPQGLHLLYYGLSESEH
QGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDA
NLGPYPIEAGAAWVNLSNCISERVLERC
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mRNA from alignment at Contig_61:381826..382956-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8698 ID=mRNA_8698|Name=jgi.p|Trimin1|132963|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_61:381826..382956- (Tribonema minus UTEX_B_3156 )
GGGGGCTTTCTTGTGATTCTGGACACTCCGCCAGGGCTTCATTTGGGCAT TGACTGCAGGCTGCACCAGGTGAACGTCACGATCTGCATTGCACCCACTG CCTGCACACTTCCCTGCACCCCCCGAGCAGCACCAATAATAGCCCCAAAT CGATGGTGTAGCTGTTGATGGGTCCCATGCGGCTTGTTCACTCTGTGTTG CACGCTCAGCTGAATCGACATCGCTTGTGCAATACCCTAGCATGCGATCC CGCTTGCCAACAAGCGATGCAATACGGTGCAAGCAGCAGATTTGTGTGTT GCAGCTTGCCACTGTCCGGGAGAAAGCTACTCATCATGCCAAAAGCATCG TGCTTCTTGTTCAGAGCCTGTGCTATTTGATGGGTACATCAGCACTCATC TCCACATCTTTGTGATCTCTAAGTTTCACGCCTGTCAAGGGCACAGCAGG CTTCACTCATGTGCAAAAAAGCCAATCATATCTGTACGCACACCAATGCA GGTGTTGTCTCTGCAACGCTATGCCTGCATGTCGGTGCCCTGAGTCATTG AGCATGATTCAGTGAGTGCACGCATACCTTTTATTGCATACCTAAATGCA TACCGCTCATAGCTTAGCTGCATTAAAATGCGAAAGTACAGCCGTCATGT GCACAGGCAGCGGCACTCAACTTGTCATCACGCCTATGTAGCCAAAGCTC AATCCAACGCTACCATACGCACAGAGTCAGGCCCCAATCTGTTTAGCTGC GCTACGCCAGAGCAGCAACACGCTTGCCCAACTTCAACCCTGACATCGCC CGAACCCTCCTTGCAGACGGGCCCCAACTTCAAGGGCATGAAGATGATCC CGCAGGGCCTCCACCTCCTCTACTACGGCCTCTCGGAGTCGGAGCACCAG GGAATGTTCTTCGAGGTTCGCGCGGGTTCCGTGCAGGTTCTCTGCTGGGA CGCCGCCGCGGAGGACCTCGTTCACGGCGACAAGAACCTGCCGCAGGGGG CGCTGGCGGAGCTCACCGCAGCAGTGCTCAGGGGCGAGCTGGACGCGAAC CTGGGTCCGTACCCGATTGAGGCGGGCGCGGCGTGGGTGAATCTCAGTAA CTGCATTTCGGAGAGGGTGCTGGAGAGGTGT
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Coding sequence (CDS) from alignment at Contig_61:381826..382956-

>mRNA_8698 ID=mRNA_8698|Name=jgi.p|Trimin1|132963|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_61:381826..382956- (Tribonema minus UTEX_B_3156 )
GGGGGCTTTCTTGTGATTCTGGACACTCCGCCAGGGCTTCATTTGGGCAT
TGACTGCAGGCTGCACCAGACGGGCCCCAACTTCAAGGGCATGAAGATGA
TCCCGCAGGGCCTCCACCTCCTCTACTACGGCCTCTCGGAGTCGGAGCAC
CAGGGAATGTTCTTCGAGGTTCGCGCGGGTTCCGTGCAGGTTCTCTGCTG
GGACGCCGCCGCGGAGGACCTCGTTCACGGCGACAAGAACCTGCCGCAGG
GGGCGCTGGCGGAGCTCACCGCAGCAGTGCTCAGGGGCGAGCTGGACGCG
AACCTGGGTCCGTACCCGATTGAGGCGGGCGCGGCGTGGGTGAATCTCAG
TAACTGCATTTCGGAGAGGGTGCTGGAGAGGTGT
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