mRNA_8612 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|77658
Unique Name	mRNA_8612
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|77658 vs. uniprot
Match: A0A835YSQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ8_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 6.600e-156
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1

Query:   52 MLAGTGRRFLRAATRSSPCYASTVPAVAPAAVHGSQWRATRCLATKKPEGFRLARTPQAAAAVKDVRRLAKAGNFAAMLQRVHSAAAAPRATTNELGDLYAVAATQLARAARSEDALALLETAKERGAARPALYAAXXXXXXXXXXXXXXLTLFQELRAAGLEAPTPTLCVAAEAAARAAEWSACAELLREMRNERGLGEAGGAYDNALQACADGGPKEHVYEFLDDLIIKSKREAGARVGKRPERSGGGAE 807
            MLAGTGRRFLRAATRSSPCYASTVPAVAPAAVHGSQWRATRCLATKKPEGFRLARTPQAAAAVKDVRRLAKAGNFAAMLQRVHSAAAAPRATTNELGDLYAVAATQLARAARSEDALALLETAKERGAARPALYAAXXXXXXXXXXXXXXLTLFQELRAAGLEAPTPTLCVAAEAAARAAEWSACAELLREMRNERGLGEAGGAYDNALQACADGGPKEHVYEFLDDLIIKSKREAGARVGKRPERSGGGAE
Sbjct:    1 MLAGTGRRFLRAATRSSPCYASTVPAVAPAAVHGSQWRATRCLATKKPEGFRLARTPQAAAAVKDVRRLAKAGNFAAMLQRVHSAAAAPRATTNELGDLYAVAATQLARAARSEDALALLETAKERGAARPALYAAXXXXXXXXXXXXXXLTLFQELRAAGLEAPTPTLCVAAEAAARAAEWSACAELLREMRNERGLGEAGGAYDNALQACADGGPKEHVYEFLDDLIIKSKREAGARVGKRPERSGGGAE 252

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|77658 vs. uniprot

BLAST of jgi.p|Trimin1|77658 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YSQ8_9STRA	6.600e-156	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_57	contig	Contig_57:473226..477853 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|77658\|CE77657_134
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	Pentatricopeptide repeat
Ec32 ortholog	Ec-11_001170.1
TranscriptId	77980
Track	FilteredModels1
ProteinId	77658

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|77658	gene_8612	Tribonema minus UTEX_B_3156	gene	Contig_57 473226..477853 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|77658	Trimin1\|77658\|CE77657_134	Tribonema minus UTEX_B_3156	polypeptide	Contig_57 473534..477812 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8612_1	exon_8612_1	Tribonema minus UTEX_B_3156	exon	Contig_57 473226..473259 +
exon_8612_2	exon_8612_2	Tribonema minus UTEX_B_3156	exon	Contig_57 473517..473773 +
exon_8612_3	exon_8612_3	Tribonema minus UTEX_B_3156	exon	Contig_57 475038..475169 +
exon_8612_4	exon_8612_4	Tribonema minus UTEX_B_3156	exon	Contig_57 476008..476208 +
exon_8612_5	exon_8612_5	Tribonema minus UTEX_B_3156	exon	Contig_57 477627..477853 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_8612	UTR5_8612	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_57 473226..473259 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8612	CDS_8612	Tribonema minus UTEX_B_3156	CDS	Contig_57 473534..473773 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8612	UTR3_8612	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_57 477813..477853 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_57:473226..477853+
coding sequence from alignment at Contig_57:473226..477853+

spliced messenger RNA

>mRNA_8612 ID=mRNA_8612|Name=jgi.p|Trimin1|77658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=851bp|location=Sequence derived from alignment at Contig_57:473226..477853+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAAGCTTCTGCCAGACTAGTCCTGGTTGGGGAGGATCGACCCAGATCAT
CATGCTGGCAGGCACAGGGAGGCGGTTCTTGAGAGCAGCGACGCGCAGCA
GCCCATGCTACGCATCGACAGTGCCCGCCGTTGCACCTGCAGCAGTGCAT
GGCAGCCAGTGGCGGGCGACGCGGTGTCTGGCGACCAAGAAACCGGAGGG
CTTCAGGCTAGCACGCACGCCGCAAGCCGCCGCAGCGGTCAAAGATGTTC
GGCGATTAGCAAAGGCGGGGAACTTCGCTGCGATGCTGCAGAGGGTCCAC
AGCGCGGCCGCGGCGCCGCGCGCGACGACGAACGAGCTCGGCGACCTGTA
CGCCGTGGCGGCGACGCAGCTCGCGCGCGCGGCGCGCAGCGAGGATGCAC
TGGCCCTGCTGGAAACCGCCAAGGAGCGCGGCGCCGCGAGGCCCGCGCTC
TACGCTGCGGCGGTCAGCGCGGCGAATAAGGCGGGCCACGCGGAGCGCGC
GCTGACGCTGTTCCAGGAGCTGCGCGCCGCGGGGCTGGAGGCGCCGACGC
CGACGCTGTGCGTCGCGGCGGAGGCGGCGGCGCGCGCGGCGGAGTGGAGC
GCGTGCGCGGAGCTGCTGCGCGAGATGCGCAACGAGCGCGGCCTCGGCGA
GGCGGGCGGCGCGTACGACAACGCGCTGCAGGCGTGCGCCGACGGCGGCC
CGAAGGAGCACGTGTACGAGTTCCTGGACGACCTCATAATCAAGAGCAAG
CGCGAGGCCGGGGCGCGCGTCGGCAAGCGGCCCGAGCGCAGTGGCGGCGG
CGCGGAATGACGCTCTGAGTGCTGACTAATATTATCATCATTACCGGTGG
A

protein sequence of jgi.p|Trimin1|77658

>Trimin1|77658|CE77657_134 ID=Trimin1|77658|CE77657_134|Name=jgi.p|Trimin1|77658|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MLAGTGRRFLRAATRSSPCYASTVPAVAPAAVHGSQWRATRCLATKKPEG
FRLARTPQAAAAVKDVRRLAKAGNFAAMLQRVHSAAAAPRATTNELGDLY
AVAATQLARAARSEDALALLETAKERGAARPALYAAAVSAANKAGHAERA
LTLFQELRAAGLEAPTPTLCVAAEAAARAAEWSACAELLREMRNERGLGE
AGGAYDNALQACADGGPKEHVYEFLDDLIIKSKREAGARVGKRPERSGGG
AE*

mRNA from alignment at Contig_57:473226..477853+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8612 ID=mRNA_8612|Name=jgi.p|Trimin1|77658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4628bp|location=Sequence derived from alignment at Contig_57:473226..477853+ (Tribonema minus UTEX_B_3156 )
CCAAGCTTCTGCCAGACTAGTCCTGGTTGGGGAGGTTCGTATTTCAACTT
GAAGCAACTCTGTACGTTAAGACCTACAGCTGACAATGCACTGATTGGCG
TCACATGACTGCGCTGGGGGCCGGCAGCTTCCAGCACGTGCTGCCGTCCA
ATGTTTCATTGCTATGTTTGCTGCTTATGTCTGCTGAGGAGCCATTTTGG
AACAAATTGAACCTGCCACCGTTGCTGCGAAACCCAAAAGAGCTACACTT
TTTCACATTTTCCACACACCAACTTCCCCCCATCGCCGCAGGATCGACCC
AGATCATCATGCTGGCAGGCACAGGGAGGCGGTTCTTGAGAGCAGCGACG
CGCAGCAGCCCATGCTACGCATCGACAGTGCCCGCCGTTGCACCTGCAGC
AGTGCATGGCAGCCAGTGGCGGGCGACGCGGTGTCTGGCGACCAAGAAAC
CGGAGGGCTTCAGGCTAGCACGCACGCCGCAAGCCGCCGCAGCGGTCAAA
GATGTTCGGCGATTAGCAAAGGCGGGGAACTTCGCTGCGATGCTGCAGGT
GCGTGATCATCTAACCTTGACTGTCTGAAGCCGTGGTCTTTCCACAGAGT
TTGGCAAAGGCGGGAGACATTGCCACGACGTGACAGTTTCTTGGCCGTAT
GAAGTCGTGATCTGTCGACAGAGCTTGGCGAATGCGGCTCCCTGCGCTGC
AATGCGGTAGGTTCTCGGCCGTGTGAAATTTGAATCCGTCGATGAGAGTT
CGGCAGAGGCGAGACACTCCGCTGCGATGTAGTAACTGCCCAGCCGTCCT
TGCCATGTTATCCAGCAGTGGAGGCTATCAGACGCCTGAAGCTGCTGCAA
TGCTGCAGTTGGTGTGTCCGCGTTCGGCTGTCGGAGCTGTATTTCTCAAT
GTCTCAACCACGGGAATATGATCTTGTTTACCGCTTGTCTCAGTATGCCA
TCGAAGTACTGATGGCAAAGCGACGGCTGATGCTGCTGCGCTGCCGCGTC
GCAGTGCTTTTGAGCAGGCGTTGACAGTACGGCACTGTGTCTGTGATGCA
TGCTGCACCATGGCGTGATCAAAACTTCAAAGGGAACTCACGAGTTCTGT
CGTGCGCACAGATGAAATGCTCACTGCCCCAAGTGAAGTTCAATGCGAGT
ACGACATTATGGCCCCATCACTGCTCGCATATGGCACTGCCAGCCACTCG
CAACAGCAGGTCGCCGCCGAACACCATAGAGCTTCCGTAACGAAGCCATG
CGCGTGTTCAACATATGCGCCGCTTCACAGGCTTCAAAGCTTTCGGGTTC
TGGTGATGGTTGGCGTCACTTTCCCAATGCACAACTTTCAATGCAACCTT
GCTTGAGCGCTGCAACATCACAGAGGTGCACGTTCCGCAAGGCTGGTTGT
TAAGCGCCCACAGGCAGGCGCTAACGTCACTGCTTGCATAACTTCAATAG
TGAACTATTATGAGTTTAACAGTGCGCCTTGCCGTCGTATGCGCCACAGC
ATAGCGTGCTCGGCAGCGCCTACGCGCCGCCTATGTATACTACCACGTAC
CACTACTGACGCGCCCCTTGTCCCGCTTCCGCGGCATTCCATGTGTACCT
ACCTTCTTGACTAACACTGCTTGAATAACCCCCAAATCCCGGATTTACTA
CGCTTTAACGTGTGATACTCCAATCGCCTCCCAAGAATCTGCAACGCTTA
CATAATCTATGTAGCCACAACCACAAACGGCATAACAAACATACCTTGAC
GCCACATTGAGATTGAAATTGCCCCCCCCCCTCTGCGCCCATCATCGCAT
GCGCCGCCGCAGAGGGTCCACAGCGCGGCCGCGGCGCCGCGCGCGACGAC
GAACGAGCTCGGCGACCTGTACGCCGTGGCGGCGACGCAGCTCGCGCGCG
CGGCGCGCAGCGAGGATGCACTGGCCCTGCTGGAAACCGCCAAGGTGCGG
TCTCGCTTGCGGCATCGATGGGGTTCATGTTCATGCCCTGTGACTCCGTC
TTGCTTGCCGGCAGAAAACTGCCATCTAGCGGTGTCCTCCAGGCCATGCA
GCGGCCCTGCGCGCCGCGCTGCCCCTCCCCCCCCCTCGCTCCTCCGCTTC
GTGTGCTGCGTGTTGCGGGCAGCGCCAAGTATCGTAGACCTGCGCGTTGT
GCGCTGCCTCAACAGTTGAGCGCTGCCGCAACCAGTATTGAGCGTTGTCA
CCACCCTGAGCGCTGCCACACGCCATCTGAGTGCTGCTGCACATGTTGAG
TGCTGCCACACCAACTGGGCACTCAGCACTGAGCGCGCAAAGACGTGCGG
ATGCATCTGCTTGGTCTGTTTATATGTGTAACACGTTGTGACTTCTACCT
TGTGCATGGCGCCTCACTTTCAACCATTAGCCCTAACTCCAAGCCGCCGG
CCCCAGCACCTGATGCCAAAGTCAGTGCTCACCGTTGCTGTGGAGCAATG
CGCAGAGCGCAAAAGCTTGCTGCCATTTACGTAAATCCACCGCGCCGCGC
AACGCCACGACTCCTACGAGATACAGGGCAATTGTCGCCGCCGCCCGCCG
CCACAGTGCCACGCTCCTTACGCGTAGCAGCAGCACGTGCAGTGCGACAG
CCGCCGCCGCTGCCGCCATCGACGCCACGCTCACCGCCCCACGCAGCGAC
CGGCAAGTCGGACGAAGGTCGGGTTGGAACATCTGAGCACGCAGCACCAG
CAGCGCGCACCACTACCGCCACCATCACGAATCAACGACCCTGCTCACGG
CCCCACACCTCGCTCCCCGCTGCCACGCGCAGGAGCGCGGCGCCGCGAGG
CCCGCGCTCTACGCTGCGGCGGTCAGCGCGGCGAATAAGGCGGGCCACGC
GGAGCGCGCGCTGACGCTGTTCCAGGAGCTGCGCGCCGCGGGGCTGGAGG
CGCCGACGCCGACGCTGTGCGTCGCGGCGGAGGCGGCGGCGCGCGCGGCG
GAGTGGAGCGCGTGCGCGGAGCTGCTGCGCGAGGTGCGAATTGATGCGTT
TCCGCAGTTGCAGTATTAACATCGCGCAGATCACTGTGCAGGGGAAGCGG
CGCTGGTGTCATTTAAAACGCCGAGTCACACACACACGCGCGCTTGTGTG
CGGGAAAGAAAATAATCTTGCACAGCAAGAACGGGCACTCCATCTCAGGC
GGCGGCGCGCTCGGCGCAGTGCAGCGCATGCGCGGAGCTGCTGCGCGCGA
GGTGCGCGAATCGATGAAGTCACGTGCTGCGCAGGGGTGCATTTCGCTGC
AGGAAGGAGGTCTCCATACACAACACAGTCCAGCGAGTTACAGTAGTCAA
CGGGTTTGTGGGAGGCCGTGTCTCCGCAAGTCGGATTCGTCTCCGTAGTA
GGAGGTGATGTGTCCAGGGGGATGCGTTGCGCAGGAGTCGGTGCCTGCAC
AAAGTTGGTGGCGTCGGCGGCAACAGCAGGAGCAGCAGCGCTCAGTGCTA
GGATTCAGTCCCTTGTGAGTACCTGCGTCGTCTCACCGTCGGCTGTTGAG
CTTTATGAGCAAGACGACGGGCCGGTCAACGGTATGTATGTACAAGTAGC
GACGCACGGCAGTGGCAGTGCTCATCTGAACTGCACGTGCACAGCACTGT
GGCCGCCAGCATGACGCGCCCTTCAAGTGTTGAAGCGATCATGCATGCAC
GGAAGGCACTGGATTGAAGCGAGCGCGTCGACCGGCAGCGCTGCACGAGC
GTCGGCACGGCGTGGCCGGGGCGCGCAGTTGAGCGCTGCGCAGCAACGCT
CAACCAGCTGGTGTATGTCTGTACGTGACGCTTTACGGTATGTATCAGGG
CACCGAGGCCAGCATCCAGTCAATGGTCCAACACTTGTGACCCGCCTGCG
GTTCCCCTCCCCACAACACGTCACCGTTGCCAGTGCCGCAATCATGCGCG
ACGGGGGGGGGGGCGTCCGCGCAATTTACTCCCGCTTTACTGCATCATCC
ACTGCCGCCAGATGCGCGGCGAGCACGGCCTGGGCGTATACTTGTCAATG
TACTTGAAAGCATCACCAGCTGATACGCGTTCAACAGATGGCATCATCGA
CGCACCTGACTCACCCGGACACACCTACATGCTGCCGCCGCCGCCGCCGC
CAGATGCGCGGCGAGCGCGGCCTCGGGGGGGCAGACGACGATGTGTACTT
GTTGACATGCTCGGAAGTATCACCAGTCGGTAACCCCATCAGCTGGCATA
AATCAACTCTGTCGACTCACTCACATGCCTGCATGCCGCCACCGCCGCCA
GATGTGCGGCGAGCGCGGCCTCGGGGAGGCAGACGGCGTGCACTTTATAG
TATACTTGGATGTCGGTAACCTCATCGGATGGCATAATCATTCAACAACA
ACTTTCAACTCACGCACATACCTACTTAAATACCACCGCTGCCGCCGCCA
GATGCGCAACGAGCGCGGCCTCGGCGAGGCGGGCGGCGCGTACGACAACG
CGCTGCAGGCGTGCGCCGACGGCGGCCCGAAGGAGCACGTGTACGAGTTC
CTGGACGACCTCATAATCAAGAGCAAGCGCGAGGCCGGGGCGCGCGTCGG
CAAGCGGCCCGAGCGCAGTGGCGGCGGCGCGGAATGACGCTCTGAGTGCT
GACTAATATTATCATCATTACCGGTGGA

Coding sequence (CDS) from alignment at Contig_57:473226..477853+

>mRNA_8612 ID=mRNA_8612|Name=jgi.p|Trimin1|77658|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_57:473226..477853+ (Tribonema minus UTEX_B_3156 )
ATGCTGGCAGGCACAGGGAGGCGGTTCTTGAGAGCAGCGACGCGCAGCAG
CCCATGCTACGCATCGACAGTGCCCGCCGTTGCACCTGCAGCAGTGCATG
GCAGCCAGTGGCGGGCGACGCGGTGTCTGGCGACCAAGAAACCGGAGGGC
TTCAGGCTAGCACGCACGCCGCAAGCCGCCGCAGCGGTCAAAGATGTTCG
GCGATTAGCAAAGGCGGGGAACTTCGCTGCGATGCTGCAGAGGGTCCACA
GCGCGGCCGCGGCGCCGCGCGCGACGACGAACGAGCTCGGCGACCTGTAC
GCCGTGGCGGCGACGCAGCTCGCGCGCGCGGCGCGCAGCGAGGATGCACT
GGCCCTGCTGGAAACCGCCAAGGAGCGCGGCGCCGCGAGGCCCGCGCTCT
ACGCTGCGGCGGTCAGCGCGGCGAATAAGGCGGGCCACGCGGAGCGCGCG
CTGACGCTGTTCCAGGAGCTGCGCGCCGCGGGGCTGGAGGCGCCGACGCC
GACGCTGTGCGTCGCGGCGGAGGCGGCGGCGCGCGCGGCGGAGTGGAGCG
CGTGCGCGGAGCTGCTGCGCGAGATGCGCAACGAGCGCGGCCTCGGCGAG
GCGGGCGGCGCGTACGACAACGCGCTGCAGGCGTGCGCCGACGGCGGCCC
GAAGGAGCACGTGTACGAGTTCCTGGACGACCTCATAATCAAGAGCAAGC
GCGAGGCCGGGGCGCGCGTCGGCAAGCGGCCCGAGCGCAGTGGCGGCGGC
GCGGAATGA