mRNA_8574 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: A0A835YP68_9STRA (DUF2431 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP68_9STRA) HSP 1 Score: 647 bits (1670), Expect = 1.260e-232 Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1 Query: 1 MAHVLSPYLSRHTVCGGEVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHGGAAAGGVATRDAPAYQHELHLVGAPPEDPDAVARAVRSVAGAGNVLAVRLVHTYAPPQQPLFPQHDSGGQAGSGXXXXXXXXXXXXXXXXXXXXAAIANCAYEITYASRTAALSRGAADELRAAVEAQVPALLGGRALRPGKSGRGVSRAVPAHLLGFHG 1161 MAHVLSPYLSRHTVCGGEVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHGGAAAGGVATRDAPAYQHELHLVGAPPEDPDAVARAVRSVAGAGNVLAVRLVHTYAPPQQPLFPQHDSGGQAGSGXXXXXXXXXXXXXXXXXXXXAAIANCAYEITYASRTAALSRGAADELRAAVEAQVPALLGGRALRPGKSGRGVSRAVPAHLLGFHG Sbjct: 1 MAHVLSPYLSRHTVCGGEVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHGGAAAGGVATRDAPAYQHELHLVGAPPEDPDAVARAVRSVAGAGNVLAVRLVHTYAPPQQPLFPQHDSGGQAGSGXXXXXXXXXXXXXXXXXXXXAAIANCAYEITYASRTAALSRGAADELRAAVEAQVPALLGGRALRPGKSGRGVSRAVPAHLLGFHG 387
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: A0A3M6UI79_POCDA (FDX-ACB domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UI79_POCDA) HSP 1 Score: 94.4 bits (233), Expect = 3.030e-17 Identity = 74/208 (35.58%), Postives = 96/208 (46.15%), Query Frame = 1 Query: 58 NDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHG 681 N++L++GDGNFSF+ L S L + +A LS+F+ +LH VDAT L +R FDRVI+NFPH GK N ++R LL AS A R +G+ CV+L GQGGT + + SWQ +AA+AGL L V F D+ Y A R G L H FVHG Sbjct: 11 NNVLVVGDGNFSFTVCLASALSKTS-------VKIVATSLDSRAALASNDFALGNIAKLSSFENVEILHEVDATDLCQK----FGSRTFDRVIFNFPHTGGKSNIAKSRDLLERFFASAAHHVERFKGDICVSLCQGQGGTPLDNPRRE-LGNSWQVVYRAAKAGLILNDVYPFKSEDYTSYRSAGFRGQLGKGFHTVNGLTHVFVHG 206
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: A0A8J5XRQ9_DIALT (DUF2431 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XRQ9_DIALT) HSP 1 Score: 93.2 bits (230), Expect = 4.320e-17 Identity = 100/286 (34.97%), Postives = 122/286 (42.66%), Query Frame = 1 Query: 31 RHTVCGGEVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGA-------FSPGAAPLLHTFVHGGAAAG-GVATRDAPAYQHELHL----VGAPPEDPDAVARAVRSVAGAGNVLAVRLVHTYAPP 852 + T G V +L++GD +FSF+ L +L + + LA L A V HGVDATRL + P R +IYNFPHV GK N RRNR LL D L + + L G+ CVAL GQGGTS E D + +WQA QA A L ++ GYA C R G A F G L+H F AAA GV+ D P Y HEL L VG+ + R V V G AV TY P Sbjct: 26 QRTALGAAVQRVLVVGDADFSFAAGLQRVLAASGRPVELIATGYEPERGLDERFPR----AREHLAFLRASG-ARVEHGVDATRLPERFAPGSACR----IIYNFPHVVGKSNLRRNRDLLRDFLRATT-SVLAPGGDVCVALCEGQGGTSLERAPCD-WAMTWQATVQANRAAHVLVDAVPWAEMAVEGYA-PC-RAKGSAESAFSLSFELGEGALVHIFAPAHAAAERGVSCADGPLYLHELQLARSAVGSSALSAAELLRFVEPVVGRNLARAVHHRETYDHP 298
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: A0A2B4RVJ2_STYPI (Ferredoxin-fold anticodon-binding domain-containing protein 1-like n=4 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RVJ2_STYPI) HSP 1 Score: 92.4 bits (228), Expect = 1.310e-16 Identity = 73/208 (35.10%), Postives = 96/208 (46.15%), Query Frame = 1 Query: 58 NDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHG 681 + +L++GDGNFSF+ L S L + + + LSAF+ +LH VDAT L +R+FDRVI+NFPH GK N ++R LL AS A R G+ CV+L GQGGT + + SWQ +AA+AGL L AV F ++ Y A R G L H FVHG Sbjct: 11 DSVLVVGDGNFSFTVCLASALSKTS-------VKIVATSFDSRTALASNEFALENIEKLSAFENIEILHEVDATDLRRK----FGSRKFDRVIFNFPHTGGKSNIAKSRDLLERFFASAAHHVERFEGDICVSLCQGQGGTPLDNPRRE-LGNSWQVVCRAAKAGLILNAVYPFKSEEYTAYRSAGFRGQLGKGFHTINGLTHVFVHG 206
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: UPI0009E2B79D (uncharacterized protein LOC110043430 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2B79D) HSP 1 Score: 88.6 bits (218), Expect = 3.130e-15 Identity = 74/208 (35.58%), Postives = 96/208 (46.15%), Query Frame = 1 Query: 58 NDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHG 681 N++L++GDGNFSF+ L S L + + LSAF +LH VDAT L P R FDRVI+NFPH GK N ++R LL AS A + + G+ CV+L GQGGT + + + +WQ +QAA+AGL L AV F D+ Y A R G L H FV G Sbjct: 11 NNVLVVGDGNFSFTVCLASALSETS-------VKIVATSLDSRAALANNDFAVENIDKLSAFKNVEILHEVDATNLTGNFGP----RIFDRVIFNFPHTGGKSNIGKSRELLERFFASAAHH-VDSNGDICVSLCQGQGGTPLDNPRRE-HGNTWQVVSQAAKAGLILNAVYPFRSVDYTSYRSAGFRGQLGKGFHTINGLTHVFVPG 205
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: UPI001CF27E77 (ferredoxin-fold anticodon-binding domain-containing protein 1-like n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF27E77) HSP 1 Score: 87.8 bits (216), Expect = 4.340e-15 Identity = 71/207 (34.30%), Postives = 95/207 (45.89%), Query Frame = 1 Query: 61 DILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHG 681 D+LI+GDGNFSF+ L S L + +A LS ++ + H VDAT ++ +R FDR+I+NFPH+ GK N ++R LL AS + GE CV+L GQGGT + + SWQ QAA++ L L AV F+ AD+ Y A R G L H FVHG Sbjct: 12 DVLIVGDGNFSFTLCLASALSYSS-------VKIVATSLDSLPQLANNDFAVENIAKLSEYENVEMFHEVDATNISKT----FGSRVFDRIIFNFPHLGGKSNIGKSRKLLELFFASAVKHVEPFEGEICVSLCQGQGGTPMDNPRRE-LGNSWQVVYQAAKSDLILRAVYPFTSADYDCYRSAGFRGQLGKGFHTVNGLTHVFVHG 206
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: W5LZN9_LEPOC (Ferredoxin-fold anticodon binding domain containing 1 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5LZN9_LEPOC) HSP 1 Score: 84.3 bits (207), Expect = 7.300e-15 Identity = 81/251 (32.27%), Postives = 106/251 (42.23%), Query Frame = 1 Query: 52 EVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFVHGGAAAGGVATRDAPAYQHELHLVGAPPEDPDAVARAVRSVAG 804 + D+L+LG+GNFSF+ +LC + T GA+ L V VD+TRL + P L + FD +I+NFPH K +RNR+LL S A+ L+ GE V L GQGGT A+ + + + SWQA AAEAG L+ + F A + GY +R F A L H F TR P APPE A AR R G Sbjct: 10 DPRDVLLLGEGNFSFAAALCQAGGGSPRVTATCYQAEEAVLQQE---------GAEENIQLLREHGAEVHFAVDSTRLGECPA--LAGQLFDHIIFNFPHCGRKAGVKRNRSLLAKFFLSCAQV-LKDSGEVHVTLCNGQGGTPAD-QPMREWHNSWQAVAMAAEAGFILSEIRPFDGAKYHGYRSTGYRSQDKTFHAEGA-LTHVF-----------TRSLPC---------APPESVQAEARLARGSVG 226
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: A0A8J7NTZ3_ATRSP (FDXA1 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NTZ3_ATRSP) HSP 1 Score: 87.0 bits (214), Expect = 7.350e-15 Identity = 70/208 (33.65%), Postives = 95/208 (45.67%), Query Frame = 1 Query: 52 EVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTFV 675 + D+L++G+GNFSF+ +LC + T GA+ L V GVD TRL + P L + FDR+I+NFPH K +RNR+LL S A+ L+ GE V L GQGGT A+ + + + SWQA AAEAG L+ + F A + GY +R F A L H F Sbjct: 6 DPQDVLLVGEGNFSFAAALCQAAGGSARVTATCYQPEEAVLQQE---------GAEENIQLLRDHGAEVHFGVDTTRLGECPA--LARQLFDRIIFNFPHCGRKAGVKRNRSLLAKFFLSCAQV-LKDSGEVHVTLCNGQGGTPAD-QPMREWHNSWQAVAMAAEAGFILSEIRPFDCAKYRGYRSTGYRSQDKTFHVEGA-LTHVFT 199
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: A0A7D9H712_PARCT (Ferredoxin-fold anticodon-binding domain-containing 1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9H712_PARCT) HSP 1 Score: 85.5 bits (210), Expect = 2.490e-14 Identity = 68/209 (32.54%), Postives = 95/209 (45.45%), Query Frame = 1 Query: 64 ILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPG---AAPLLHTFVHG 681 +L++GDGNFSFS SL +D L L A++ +LH +DAT+L++ P R+FDR+I+NFPH GK N ++ R LL D S G+ CV L GQGGT + + SWQ AA+AGL L + F +D+ Y +R G + G A L+H F+ G Sbjct: 22 VLVVGDGNFSFSLSLAVF-----RDELGLNTHLALTSFDSKDILTQDEFTRVNLERLQAYENVEILHNIDATKLSEYFP----TRKFDRIIFNFPHTGGKSNIKKCRKLLEDFFISAIEHIESYDGDICVTLCKGQGGTPVD-EPQRSHGNSWQIVNNAAKAGLILHQLHPFLDSDYAHYTSVGYR---GKLAKGFHTAGGLIHIFIPG 217
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Match: UPI001604327A (ferredoxin-fold anticodon-binding domain-containing protein 1 homolog n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001604327A) HSP 1 Score: 84.7 bits (208), Expect = 4.590e-14 Identity = 78/216 (36.11%), Postives = 97/216 (44.91%), Query Frame = 1 Query: 25 LSRHTVCGGEVNDILILGDGNFSFSQSLCSLLRRQHQDTXXXXXXXXXXXXXXXXXXXXXXXGADTLAALSAFDFCTVLHGVDATRLADAPPPPLRARRFDRVIYNFPHVNGKQNARRNRALLCDTLASVARAALRARGEACVALVTGQGGTSAEARTLDGYTQSWQAATQAAEAGLTLAAVELFSVADFPGYALACHRPHGGAFSPGAAPLLHTF 672 ++ VC G+V L+LGDGNFSFS +L + T D A TV+ GVDAT L P L+ ++FD +I+NFPHV K +RNR LL S A L A G V L GQGGT A+ + + SWQA AAEAGL L V F D+ YA + +R AF A L H F Sbjct: 1 MNMERVCEGKV---LVLGDGNFSFSVALVQRMATPAHLTATALGGEEEALKQHSEAGNNIQALQDKGA--------TVMFGVDATALTACPR--LQGQKFDHIIFNFPHVGRKAPIKRNRELLRKVFISCAEL-LCAEGHVYVTLCQGQGGTPAD-QPQRAWHNSWQAVAMAAEAGLILGEVVPFCAEDWEVYAPSGYRSRDKAFHTEGA-LTHIF 200 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350131 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8574 ID=mRNA_8574|Name=jgi.p|Trimin1|350131|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1174bp|location=Sequence derived from alignment at Contig_57:147889..149528- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGCACGTCCTGTCGCCGTATCTCAGCCGCCACACGGTGTGCGGCGGback to top protein sequence of jgi.p|Trimin1|350131 >Trimin1|350131|estExt_Genemark1.C_Ctg_570024 ID=Trimin1|350131|estExt_Genemark1.C_Ctg_570024|Name=jgi.p|Trimin1|350131|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=388bp MAHVLSPYLSRHTVCGGEVNDILILGDGNFSFSQSLCSLLRRQHQDTPPPback to top mRNA from alignment at Contig_57:147889..149528- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8574 ID=mRNA_8574|Name=jgi.p|Trimin1|350131|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1640bp|location=Sequence derived from alignment at Contig_57:147889..149528- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_57:147889..149528- >mRNA_8574 ID=mRNA_8574|Name=jgi.p|Trimin1|350131|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1164bp|location=Sequence derived from alignment at Contig_57:147889..149528- (Tribonema minus UTEX_B_3156 )back to top |