mRNA_8490 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A835YQ54_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ54_9STRA) HSP 1 Score: 492 bits (1267), Expect = 7.530e-176 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1 Query: 1 MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM 750 MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM Sbjct: 1 MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM 250
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A1V9ZBP9_9STRA (Rab28 family GTPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBP9_9STRA) HSP 1 Score: 236 bits (602), Expect = 5.080e-75 Identity = 126/248 (50.81%), Postives = 165/248 (66.53%), Query Frame = 1 Query: 13 TDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSG--RTAMADAIEAEDLALEAAKAAKRSCMCM 750 +D CKL+LVGNGSVGKSSIIARFV DGF Y+QT+G+DF+EK++ + + L+VWDIGGQ+++S ML KY+YG+ +VF+CYDVTD SF+D++DWL +V++ G LK+ IY V NKIDL+ LR V E +H F+++H L GG L SA +G NV+R + +AA+A G+ LSE+EL FYD + T ADSG RTAMAD IEAEDL LE K K+SC M Sbjct: 2 SDPVCKLILVGNGSVGKSSIIARFVADGFEKQYKQTIGLDFYEKKLLLPRDKRVVLEVWDIGGQNINSKMLGKYIYGADIVFICYDVTDAKSFADVEDWLVLVQRSMGA----------LKKQQIYAVGNKIDLVHLRAVPEQKHNEFIAKHKLAGGFLLSAHNGDNVMRTVHQIAARAVGMELSEFELQFYDAPVKATV-------------VADSGEHRTAMADEIEAEDLKLEMKKRQKKSCHVM 226
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A1V9YKI4_9STRA (Rab28 family GTPase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKI4_9STRA) HSP 1 Score: 233 bits (594), Expect = 1.110e-73 Identity = 127/242 (52.48%), Postives = 159/242 (65.70%), Query Frame = 1 Query: 10 STDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKR 735 S D CKL+LVGNGSVGKSSIIARFVDDGF Y+QT+G+DF+EK++ + + L+VWDIGGQ+++S ML KY+YG+ VVFLCYDVTD SF+D DDW R+V A S ++ K+ +Y V NKIDL+ LR V EAQH +FV H L GG L SA +G NV+RA +A +A G+ L+E+EL FYD + T D RTAMAD IEAED LE AKA K+ Sbjct: 2 SGDPVCKLILVGNGSVGKSSIIARFVDDGFEKQYKQTIGLDFYEKKLLLPRDGRVVLEVWDIGGQNINSKMLTKYIYGADVVFLCYDVTDAKSFADADDWRRLVA---ATDSAIDVSSRKPKKRFVYAVGNKIDLVHLRAVSEAQHQAFVVAHQLAGGFLLSAHNGDNVLRAVYQIAGRAVGLELTEFELQFYDAPVKAT-----------VAAVHDDHRTAMADEIEAEDRRLEMAKARKK 229
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A7S1UI17_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI17_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.290e-71 Identity = 125/255 (49.02%), Postives = 163/255 (63.92%), Query Frame = 1 Query: 1 MPP------STDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMC 747 MPP +D CK++LVGNGSVGK+SI+ RFVDDGF Y QT+GVDF EK++T+R + LQVWD+GGQS+SS ML+ Y+ GS ++FLCYDVTD SF+DLDDWL +V K F + +D+QL + ++ NKIDL+ + V + F E+ L G L SAQSG+N++R AA+ G+ LSE+ELA+YD VL VT +GG D GRT AD IEAEDLA E K + C+C Sbjct: 28 MPPRKARHAGSDPACKVILVGNGSVGKTSIMRRFVDDGFERAYNQTIGVDFLEKKLTLRGDHRVHLQVWDVGGQSISSKMLSTYIKGSNLIFLCYDVTDAQSFADLDDWLGMVHKAF----RDPITDEQLPLPHVQVLGNKIDLIGQKVVPDRDAREFAEENKLKGHHLVSAQSGENLLRCMYACAAEMVGITLSEHELAYYDTVLAVT------VVEGGGDADPDGGRTPWADEIEAEDLAAERRKQEQGDCVC 272
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A485LH36_9STRA (Aste57867_21294 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH36_9STRA) HSP 1 Score: 225 bits (573), Expect = 1.740e-70 Identity = 125/239 (52.30%), Postives = 157/239 (65.69%), Query Frame = 1 Query: 10 STDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDR-VLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAK 723 S D CKL+L+GNGSVGKSSIIARFVDDGF Y+QT+G+DFFEK++ + + + LQVWDIGGQ+++S ML KY++G+ +VFLCYDVTDP SF+DLDDWL + RK D KQ +Y V NKIDL+ LR V E H +FV+ H L GG L SA SG NV+R + +A +A GV LS++EL+F D+ V P + RTA ADAIEAED A E AK Sbjct: 5 SGDPVCKLILLGNGSVGKSSIIARFVDDGFARQYKQTIGLDFFEKKIHLPHEKRVVLQVWDIGGQNINSKMLDKYIFGADIVFLCYDVTDPKSFADLDDWLDLARKP-----TPPPPDSNKKQY-LYAVGNKIDLVGLRAVSEDAHHAFVATHKLAGGFLLSAHSGDNVLRTVHQIAGRAVGVDLSDFELSFLDKPVAAYALAPSPDEN---------DPRTACADAIEAEDAAHERAK 228
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A024TLH2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH2_9STRA) HSP 1 Score: 225 bits (573), Expect = 3.180e-70 Identity = 126/244 (51.64%), Postives = 163/244 (66.80%), Query Frame = 1 Query: 16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHD-EPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCM 744 D CKL+L+GNGSVGKSSII RFVDDGF Y+QT+G+DFF K++ + + + L+VWDIGGQ++SS ML KY+YG+ +VF+CYDVTDP SF+D +DW +V K + + S + + +YLV NKIDL+ LR V AQH +FVS+H L G L SA SG NV+R + +AA+A GV LSE++L FYD VT H P+A + RT ADAIE EDL LEA K K +CM Sbjct: 8 DPVCKLILLGNGSVGKSSIINRFVDDGFAKQYKQTIGLDFFVKKIQLPHDRRVILEVWDIGGQNISSKMLDKYVYGTDIVFVCYDVTDPKSFADAEDWCALVVKAATSAEDKLSKKKSSRNQLVYLVGNKIDLVGLRAVTVAQHDAFVSKHKLTGSFLLSAHSGDNVLRTVHLIAARAVGVELSEFDLQFYD--TPVTAHALAPSAGD-------NDPRTVDADAIEQEDLRLEAQKN-KVACM 241
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: H3H2J0_PHYRM (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3H2J0_PHYRM) HSP 1 Score: 222 bits (566), Expect = 1.990e-69 Identity = 118/239 (49.37%), Postives = 156/239 (65.27%), Query Frame = 1 Query: 16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAK 732 D KLVL+GNGSVGKSS+IARFVDDGF VY+QT+G+DFFEK++ + + LQVWDIGGQ+++S ML KYL+G V LCYDVTD SFSD++DWLR+ R++ G KQ ++YLV NK DL+ R + +H +F+ +H L GG L SAQSG NV++ ++A AA + +SE+EL+F D+V+ D +G RTAMAD IEAED EA K+ K Sbjct: 6 DPAIKLVLLGNGSVGKSSLIARFVDDGFARVYKQTIGLDFFEKKLQLPRDQRIVLQVWDIGGQTINSKMLGKYLFGVHVALLCYDVTDAQSFSDVEDWLRVARENGG------------KQTNLYLVGNKTDLVAHRVISNEKHEAFIRQHGLLGGFLVSAQSGDNVLKTVYRISAAAANIHVSEFELSFCDKVVRAVIPDASNREEG-----EQEARTAMADEIEAEDRVNEARKSRK 227
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A067CAW4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAW4_SAPPC) HSP 1 Score: 219 bits (558), Expect = 2.430e-68 Identity = 127/246 (51.63%), Postives = 158/246 (64.23%), Query Frame = 1 Query: 16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDR-----VLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRS 738 D KL L+GNGSVGKSSIIARFV DGF Y+QTVG+DFFEK++ + L+VWDIGGQ+++S ML KYL+G+ ++FLCYDVTD SF+DLDDWLR+V + D+ + V YLV NKIDL LR V H +FVS+H L GG L SAQSG NV+R+ + +AA+A GV LSEYEL FYD V++ H RT +ADAIEAEDL LE AK K++ Sbjct: 3 DPVVKLTLLGNGSVGKSSIIARFVADGFEKQYKQTVGLDFFEKKLHFPRDQRVVLEVWDIGGQNMTSKMLDKYLFGANLIFLCYDVTDAKSFADLDDWLRVVP----------TLDRSKRCV--YLVGNKIDLRHLRVVSLEAHNAFVSKHKLHGGFLLSAQSGDNVLRSVHQIAARAIGVELSEYELQFYDAPVVATVVNTVDH-----------------RTTVADAIEAEDLRLEEAKRRKKA 219
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: K3XC96_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC96_GLOUD) HSP 1 Score: 219 bits (559), Expect = 3.560e-68 Identity = 122/239 (51.05%), Postives = 160/239 (66.95%), Query Frame = 1 Query: 16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASK-GGXXGAADSGRTAMADAIEAEDLALEAAKAA 729 D KLVL+GNGSVGKSS+IARFVDDGF VY+QT+G+D +EK++ L LQVWDIGGQ+++S M+ KYL+G V LCYDVTD SFSD +DWLR+ R + SS + K + +YLV NKIDL+ R + +H F+ + L GG L SAQ+G NV++ ++A AA +++S++EL+F D+V+ R PAAS GG A + GRTAMAD IEAED A EA K A Sbjct: 6 DPAIKLVLLGNGSVGKSSLIARFVDDGFTPVYKQTIGLDLYEKKLQFPRDQRLVLQVWDIGGQTINSKMIGKYLFGVNVALLCYDVTDAQSFSDAEDWLRVARLY--------SSSETGKPMHLYLVGNKIDLIAHRVISVEKHDEFIRKQKLQGGFLVSAQNGDNVLKTVYRISAAAAKIQVSDFELSFCDKVV---RASIPAASAIGGGGDAENEGRTAMADEIEAEDRANEAKKRA 233
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A5D6YAZ1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAZ1_9STRA) HSP 1 Score: 219 bits (559), Expect = 3.790e-68 Identity = 120/237 (50.63%), Postives = 158/237 (66.67%), Query Frame = 1 Query: 16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKA 726 D KLVL+GNGSVGKSS+IARFVDDGF VY+QT+G+DF+EK++ L LQVWDIGGQ+++S M+ KYL+G V +CYDVTD SFSD +DWLR+ R + + ER + IYLV NK+DL+ R V + +H FV + L GG L SAQ+G NV++ ++A A + +S++EL+F D+V+ V+ PA + G G D GRTAMAD IEAED A EA KA Sbjct: 6 DPAIKLVLLGNGSVGKSSLIARFVDDGFTPVYKQTIGLDFYEKKLQFPRDQRLVLQVWDIGGQTITSKMIGKYLFGVHVALVCYDVTDAQSFSDAEDWLRVARYYSSSATGERP-------MQIYLVGNKVDLIAHRVVSKDKHDEFVRKQQLPGGFLVSAQNGDNVLKTVYRISAAATKIPVSDFELSFCDKVVRVS---VPALGRAG--GGDDEGRTAMADEIEAEDRANEARKA 230 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8490 ID=mRNA_8490|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=753bp|location=Sequence derived from alignment at Contig_68:352837..354687+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGCCTTCGACTGACGTGCAGTGCAAATTGGTCCTAGTGGGCAATGGback to top protein sequence of jgi.p|Trimin1|170034 >Trimin1|170034|e_gw1.68.110.1 ID=Trimin1|170034|e_gw1.68.110.1|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=251bp MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVback to top mRNA from alignment at Contig_68:352837..354687+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1851bp|location=Sequence derived from alignment at Contig_68:352837..354687+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_68:352837..354687+ >mRNA_8490 ID=mRNA_8490|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=753bp|location=Sequence derived from alignment at Contig_68:352837..354687+ (Tribonema minus UTEX_B_3156 )back to top |