mRNA_8490 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170034
Unique NamemRNA_8490
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A835YQ54_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ54_9STRA)

HSP 1 Score: 492 bits (1267), Expect = 7.530e-176
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1
Query:    1 MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM 750
            MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM
Sbjct:    1 MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM 250          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A1V9ZBP9_9STRA (Rab28 family GTPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBP9_9STRA)

HSP 1 Score: 236 bits (602), Expect = 5.080e-75
Identity = 126/248 (50.81%), Postives = 165/248 (66.53%), Query Frame = 1
Query:   13 TDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSG--RTAMADAIEAEDLALEAAKAAKRSCMCM 750
            +D  CKL+LVGNGSVGKSSIIARFV DGF   Y+QT+G+DF+EK++ +     + L+VWDIGGQ+++S ML KY+YG+ +VF+CYDVTD  SF+D++DWL +V++  G           LK+  IY V NKIDL+ LR V E +H  F+++H L GG L SA +G NV+R  + +AA+A G+ LSE+EL FYD  +  T               ADSG  RTAMAD IEAEDL LE  K  K+SC  M
Sbjct:    2 SDPVCKLILVGNGSVGKSSIIARFVADGFEKQYKQTIGLDFYEKKLLLPRDKRVVLEVWDIGGQNINSKMLGKYIYGADIVFICYDVTDAKSFADVEDWLVLVQRSMGA----------LKKQQIYAVGNKIDLVHLRAVPEQKHNEFIAKHKLAGGFLLSAHNGDNVMRTVHQIAARAVGMELSEFELQFYDAPVKATV-------------VADSGEHRTAMADEIEAEDLKLEMKKRQKKSCHVM 226          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A1V9YKI4_9STRA (Rab28 family GTPase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKI4_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.110e-73
Identity = 127/242 (52.48%), Postives = 159/242 (65.70%), Query Frame = 1
Query:   10 STDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKR 735
            S D  CKL+LVGNGSVGKSSIIARFVDDGF   Y+QT+G+DF+EK++ +     + L+VWDIGGQ+++S ML KY+YG+ VVFLCYDVTD  SF+D DDW R+V        A   S ++ K+  +Y V NKIDL+ LR V EAQH +FV  H L GG L SA +G NV+RA   +A +A G+ L+E+EL FYD  +  T                D  RTAMAD IEAED  LE AKA K+
Sbjct:    2 SGDPVCKLILVGNGSVGKSSIIARFVDDGFEKQYKQTIGLDFYEKKLLLPRDGRVVLEVWDIGGQNINSKMLTKYIYGADVVFLCYDVTDAKSFADADDWRRLVA---ATDSAIDVSSRKPKKRFVYAVGNKIDLVHLRAVSEAQHQAFVVAHQLAGGFLLSAHNGDNVLRAVYQIAGRAVGLELTEFELQFYDAPVKAT-----------VAAVHDDHRTAMADEIEAEDRRLEMAKARKK 229          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A7S1UI17_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI17_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.290e-71
Identity = 125/255 (49.02%), Postives = 163/255 (63.92%), Query Frame = 1
Query:    1 MPP------STDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCMC 747
            MPP       +D  CK++LVGNGSVGK+SI+ RFVDDGF   Y QT+GVDF EK++T+R    + LQVWD+GGQS+SS ML+ Y+ GS ++FLCYDVTD  SF+DLDDWL +V K F     +  +D+QL    + ++ NKIDL+  + V +     F  E+ L G  L SAQSG+N++R     AA+  G+ LSE+ELA+YD VL VT        +GG     D GRT  AD IEAEDLA E  K  +  C+C
Sbjct:   28 MPPRKARHAGSDPACKVILVGNGSVGKTSIMRRFVDDGFERAYNQTIGVDFLEKKLTLRGDHRVHLQVWDVGGQSISSKMLSTYIKGSNLIFLCYDVTDAQSFADLDDWLGMVHKAF----RDPITDEQLPLPHVQVLGNKIDLIGQKVVPDRDAREFAEENKLKGHHLVSAQSGENLLRCMYACAAEMVGITLSEHELAYYDTVLAVT------VVEGGGDADPDGGRTPWADEIEAEDLAAERRKQEQGDCVC 272          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A485LH36_9STRA (Aste57867_21294 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH36_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.740e-70
Identity = 125/239 (52.30%), Postives = 157/239 (65.69%), Query Frame = 1
Query:   10 STDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDR-VLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAK 723
            S D  CKL+L+GNGSVGKSSIIARFVDDGF   Y+QT+G+DFFEK++ + +   + LQVWDIGGQ+++S ML KY++G+ +VFLCYDVTDP SF+DLDDWL + RK           D   KQ  +Y V NKIDL+ LR V E  H +FV+ H L GG L SA SG NV+R  + +A +A GV LS++EL+F D+ V        P  +           RTA ADAIEAED A E AK
Sbjct:    5 SGDPVCKLILLGNGSVGKSSIIARFVDDGFARQYKQTIGLDFFEKKIHLPHEKRVVLQVWDIGGQNINSKMLDKYIFGADIVFLCYDVTDPKSFADLDDWLDLARKP-----TPPPPDSNKKQY-LYAVGNKIDLVGLRAVSEDAHHAFVATHKLAGGFLLSAHSGDNVLRTVHQIAGRAVGVDLSDFELSFLDKPVAAYALAPSPDEN---------DPRTACADAIEAEDAAHERAK 228          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A024TLH2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH2_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.180e-70
Identity = 126/244 (51.64%), Postives = 163/244 (66.80%), Query Frame = 1
Query:   16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHD-EPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRSCM 744
            D  CKL+L+GNGSVGKSSII RFVDDGF   Y+QT+G+DFF K++ + +   + L+VWDIGGQ++SS ML KY+YG+ +VF+CYDVTDP SF+D +DW  +V K    +  + S  +  +   +YLV NKIDL+ LR V  AQH +FVS+H L G  L SA SG NV+R  + +AA+A GV LSE++L FYD    VT H   P+A         +  RT  ADAIE EDL LEA K  K +CM
Sbjct:    8 DPVCKLILLGNGSVGKSSIINRFVDDGFAKQYKQTIGLDFFVKKIQLPHDRRVILEVWDIGGQNISSKMLDKYVYGTDIVFVCYDVTDPKSFADAEDWCALVVKAATSAEDKLSKKKSSRNQLVYLVGNKIDLVGLRAVTVAQHDAFVSKHKLTGSFLLSAHSGDNVLRTVHLIAARAVGVELSEFDLQFYD--TPVTAHALAPSAGD-------NDPRTVDADAIEQEDLRLEAQKN-KVACM 241          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: H3H2J0_PHYRM (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3H2J0_PHYRM)

HSP 1 Score: 222 bits (566), Expect = 1.990e-69
Identity = 118/239 (49.37%), Postives = 156/239 (65.27%), Query Frame = 1
Query:   16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAK 732
            D   KLVL+GNGSVGKSS+IARFVDDGF  VY+QT+G+DFFEK++ +     + LQVWDIGGQ+++S ML KYL+G  V  LCYDVTD  SFSD++DWLR+ R++ G            KQ ++YLV NK DL+  R +   +H +F+ +H L GG L SAQSG NV++    ++A AA + +SE+EL+F D+V+     D     +G         RTAMAD IEAED   EA K+ K
Sbjct:    6 DPAIKLVLLGNGSVGKSSLIARFVDDGFARVYKQTIGLDFFEKKLQLPRDQRIVLQVWDIGGQTINSKMLGKYLFGVHVALLCYDVTDAQSFSDVEDWLRVARENGG------------KQTNLYLVGNKTDLVAHRVISNEKHEAFIRQHGLLGGFLVSAQSGDNVLKTVYRISAAAANIHVSEFELSFCDKVVRAVIPDASNREEG-----EQEARTAMADEIEAEDRVNEARKSRK 227          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A067CAW4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAW4_SAPPC)

HSP 1 Score: 219 bits (558), Expect = 2.430e-68
Identity = 127/246 (51.63%), Postives = 158/246 (64.23%), Query Frame = 1
Query:   16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDR-----VLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKAAKRS 738
            D   KL L+GNGSVGKSSIIARFV DGF   Y+QTVG+DFFEK++       + L+VWDIGGQ+++S ML KYL+G+ ++FLCYDVTD  SF+DLDDWLR+V           + D+  + V  YLV NKIDL  LR V    H +FVS+H L GG L SAQSG NV+R+ + +AA+A GV LSEYEL FYD      V++   H                 RT +ADAIEAEDL LE AK  K++
Sbjct:    3 DPVVKLTLLGNGSVGKSSIIARFVADGFEKQYKQTVGLDFFEKKLHFPRDQRVVLEVWDIGGQNMTSKMLDKYLFGANLIFLCYDVTDAKSFADLDDWLRVVP----------TLDRSKRCV--YLVGNKIDLRHLRVVSLEAHNAFVSKHKLHGGFLLSAQSGDNVLRSVHQIAARAIGVELSEYELQFYDAPVVATVVNTVDH-----------------RTTVADAIEAEDLRLEEAKRRKKA 219          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: K3XC96_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC96_GLOUD)

HSP 1 Score: 219 bits (559), Expect = 3.560e-68
Identity = 122/239 (51.05%), Postives = 160/239 (66.95%), Query Frame = 1
Query:   16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASK-GGXXGAADSGRTAMADAIEAEDLALEAAKAA 729
            D   KLVL+GNGSVGKSS+IARFVDDGF  VY+QT+G+D +EK++       L LQVWDIGGQ+++S M+ KYL+G  V  LCYDVTD  SFSD +DWLR+ R +        SS +  K + +YLV NKIDL+  R +   +H  F+ +  L GG L SAQ+G NV++    ++A AA +++S++EL+F D+V+   R   PAAS  GG   A + GRTAMAD IEAED A EA K A
Sbjct:    6 DPAIKLVLLGNGSVGKSSLIARFVDDGFTPVYKQTIGLDLYEKKLQFPRDQRLVLQVWDIGGQTINSKMIGKYLFGVNVALLCYDVTDAQSFSDAEDWLRVARLY--------SSSETGKPMHLYLVGNKIDLIAHRVISVEKHDEFIRKQKLQGGFLVSAQNGDNVLKTVYRISAAAAKIQVSDFELSFCDKVV---RASIPAASAIGGGGDAENEGRTAMADEIEAEDRANEAKKRA 233          
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Match: A0A5D6YAZ1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAZ1_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.790e-68
Identity = 120/237 (50.63%), Postives = 158/237 (66.67%), Query Frame = 1
Query:   16 DVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQVTVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDLDDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHWSFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVLDVTRHDEPAASKGGXXGAADSGRTAMADAIEAEDLALEAAKA 726
            D   KLVL+GNGSVGKSS+IARFVDDGF  VY+QT+G+DF+EK++       L LQVWDIGGQ+++S M+ KYL+G  V  +CYDVTD  SFSD +DWLR+ R +   +  ER        + IYLV NK+DL+  R V + +H  FV +  L GG L SAQ+G NV++    ++A A  + +S++EL+F D+V+ V+    PA  + G  G  D GRTAMAD IEAED A EA KA
Sbjct:    6 DPAIKLVLLGNGSVGKSSLIARFVDDGFTPVYKQTIGLDFYEKKLQFPRDQRLVLQVWDIGGQTITSKMIGKYLFGVHVALVCYDVTDAQSFSDAEDWLRVARYYSSSATGERP-------MQIYLVGNKVDLIAHRVVSKDKHDEFVRKQQLPGGFLVSAQNGDNVLKTVYRISAAATKIPVSDFELSFCDKVVRVS---VPALGRAG--GGDDEGRTAMADEIEAEDRANEARKA 230          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170034 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ54_9STRA7.530e-176100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1V9ZBP9_9STRA5.080e-7550.81Rab28 family GTPase n=1 Tax=Thraustotheca clavata ... [more]
A0A1V9YKI4_9STRA1.110e-7352.48Rab28 family GTPase n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A7S1UI17_9STRA1.290e-7149.02Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A485LH36_9STRA1.740e-7052.30Aste57867_21294 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TLH2_9STRA3.180e-7051.64Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
H3H2J0_PHYRM1.990e-6949.37Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]
A0A067CAW4_SAPPC2.430e-6851.63Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
K3XC96_GLOUD3.560e-6851.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YAZ1_9STRA3.790e-6850.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_68contigContig_68:352837..354687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170034|e_gw1.68.110.1
DescriptionRab28 family GTPase. Source PGD
COG categoryTU
Max annot lvl121069|Pythiales
EggNOG OGsKOG0078@1|root,KOG0078@2759|Eukaryota,1MBNJ@121069|Pythiales
Evalue1.56e-71
Seed ortholog36331.EPrPI00000020551
Hectar predicted targeting categoryother localisation
TranscriptId170356
TrackFilteredModels1
ProteinId170034
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170034gene_8490Tribonema minus UTEX_B_3156 geneContig_68 352837..354687 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8490_1exon_8490_1Tribonema minus UTEX_B_3156 exonContig_68 352837..353000 +
exon_8490_2exon_8490_2Tribonema minus UTEX_B_3156 exonContig_68 353289..353424 +
exon_8490_3exon_8490_3Tribonema minus UTEX_B_3156 exonContig_68 353577..353714 +
exon_8490_4exon_8490_4Tribonema minus UTEX_B_3156 exonContig_68 354373..354687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8490CDS_8490Tribonema minus UTEX_B_3156 CDSContig_68 352837..353000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170034Trimin1|170034|e_gw1.68.110.1Tribonema minus UTEX_B_3156 polypeptideContig_68 352837..354687 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=753bp|location=Sequence derived from alignment at Contig_68:352837..354687+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCTTCGACTGACGTGCAGTGCAAATTGGTCCTAGTGGGCAATGG
GTCCGTCGGCAAAAGCAGCATCATCGCACGCTTTGTGGACGACGGATTTC
ACTGCGTGTACCGGCAAACAGTTGGCGTCGACTTCTTCGAGAAGCAGGTC
ACCGTGCGCAACAGCCTGACACTGAGCTTGCAAGTCTGGGACATTGGCGG
CCAGAGTCTGTCGAGCAACATGCTGGCAAAGTACCTCTACGGCAGCCGAG
TGGTGTTCCTGTGCTACGACGTCACGGATCCAAACTCCTTCAGTGACCTG
GATGACTGGCTGCGCATCGTCCGGAAACACTTCGGAGGGAGCGGCGCGGA
ACGCAGTTCAGATCAGCAGTTGAAGCAGGTCGACATTTACCTCGTGGCAA
ATAAGATAGACTTGCTGGACCTGCGTCGGGTCAAAGAGGCCCAGCACTGG
AGCTTCGTGTCGGAGCACAACCTCTGCGGCGGCATGCTGTGCAGCGCGCA
GAGCGGACAGAACGTCGTGCGCGCCTTCAACCACGTCGCCGCGCAGGCCG
CGGGCGTGAGGCTCTCAGAGTACGAGCTCGCGTTCTACGACAGGGTGCTC
GACGTGACGCGGCACGACGAGCCGGCGGCTTCAAAGGGCGGCGGCGGCGG
CGCGGCGGACAGCGGGCGCACCGCGATGGCGGACGCCATCGAGGCGGAGG
ACCTGGCGCTGGAGGCGGCGAAGGCCGCAAAGAGGTCGTGCATGTGCATG
TGA
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protein sequence of jgi.p|Trimin1|170034

>Trimin1|170034|e_gw1.68.110.1 ID=Trimin1|170034|e_gw1.68.110.1|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=251bp
MPPSTDVQCKLVLVGNGSVGKSSIIARFVDDGFHCVYRQTVGVDFFEKQV
TVRNSLTLSLQVWDIGGQSLSSNMLAKYLYGSRVVFLCYDVTDPNSFSDL
DDWLRIVRKHFGGSGAERSSDQQLKQVDIYLVANKIDLLDLRRVKEAQHW
SFVSEHNLCGGMLCSAQSGQNVVRAFNHVAAQAAGVRLSEYELAFYDRVL
DVTRHDEPAASKGGGGGAADSGRTAMADAIEAEDLALEAAKAAKRSCMCM
*
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mRNA from alignment at Contig_68:352837..354687+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1851bp|location=Sequence derived from alignment at Contig_68:352837..354687+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCTTCGACTGACGTGCAGTGCAAATTGGTCCTAGTGGGCAATGG GTCCGTCGGCAAAAGCAGCATCATCGCACGCTTTGTGGACGACGGATTTC ACTGCGTGTACCGGCAAACAGTTGGCGTCGACTTCTTCGAGAAGCAGGTC ACCGTGCGCAACAGGTGAGCTTGGGGTCGTTTGGCCTCAACACGTATCAG TTCCTTTTTCATGTAAGGTGCTTGTTGTCATTATTGGGATGTGACTGTGC ACAAGATAGGCAATAACCTCAACTGACACTTGTGAAATATTGAGGTAAAC AGCTTCATAATCTCAACCTATCCACTGTGTTTGATGCTAAGTTTAAAGAT TAGGCTCGCAAAGAAGCATTAAGCCTGTATCATCCACCTTGCACAACTGG TACTTGCAATTCAAGGTGCACTGCACTTGCACGCTTGCTGGCTTGCTTGC AGCCTGACACTGAGCTTGCAAGTCTGGGACATTGGCGGCCAGAGTCTGTC GAGCAACATGCTGGCAAAGTACCTCTACGGCAGCCGAGTGGTGTTCCTGT GCTACGACGTCACGGATCCAAACTCCTTCAGTGACCTGGTGAGTATGATG ACACTTATGACTAGCACACTGTGCAACCTGCACCATACGGCCATGCTCAA GTAGGCTTGAAAGTTCAACAATGTGATTCAGACATTTGTGCTCTCACATA CCTGCGCTGACACGGACACTTGCTCGCTTCTGTTGATCAGGATGACTGGC TGCGCATCGTCCGGAAACACTTCGGAGGGAGCGGCGCGGAACGCAGTTCA GATCAGCAGTTGAAGCAGGTCGACATTTACCTCGTGGCAAATAAGATAGA CTTGCTGGACCTGCGTCGGGTCAAAGAGGTAAGTAGGCAAGGAGCTCCTC TGTGAACGATTGCTGACGAACATTGAAGAAGTTGCCGAAACTCACCTGTA GAAGTGTACAACTTGACAGAGAACTGTTCTTGTAAAGCACAACCTGGTAC CAGAGGGCAGATATATGCCATCTAGTCTCAAGGGACAGTGCCTCTTCCGA TGGACGTTCCGCCTGCGCTATGCAGCGCTTCATGTTACACTTGCTTGCAC GCTAGTTTGGCCATCGTGGGCAACGCTCCATGCACGCGCCGCAACGGCAT CAAAAGCACTCGCTCATTCTAGAATAAGGCTCTGCGCCTGTGGGAATACG GTGATCAGGGTAGCGGATCTAGCGTGGCTTGGTGCACAAGGTGTTGCCAC ATGCCGCTGATCAGCTCAGATCAAGTCACTTTGAATGGCTATTCAACACC TGCTTGAGAGTTCTTAAAACCATGCACAGTGTGATTCGGCACCAAGCAGT CCATACTTACCAGAGTCTCGATGGCGAAATATATGGTAGGCAGAATGAAC ACGCAGCACTTCGTGTTTTCAGTTTCCGTGCTCGTTCAAAGGGTGACAGT TGTCAACAATCGTTACAACAAAGTAATGCTGCCAGCAGTGGCTTCAAACG CTGACCACCTGTTACGCCGTGCGCACGCGCCGCCAGGCCCAGCACTGGAG CTTCGTGTCGGAGCACAACCTCTGCGGCGGCATGCTGTGCAGCGCGCAGA GCGGACAGAACGTCGTGCGCGCCTTCAACCACGTCGCCGCGCAGGCCGCG GGCGTGAGGCTCTCAGAGTACGAGCTCGCGTTCTACGACAGGGTGCTCGA CGTGACGCGGCACGACGAGCCGGCGGCTTCAAAGGGCGGCGGCGGCGGCG CGGCGGACAGCGGGCGCACCGCGATGGCGGACGCCATCGAGGCGGAGGAC CTGGCGCTGGAGGCGGCGAAGGCCGCAAAGAGGTCGTGCATGTGCATGTG A
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Coding sequence (CDS) from alignment at Contig_68:352837..354687+

>mRNA_8490 ID=mRNA_8490|Name=jgi.p|Trimin1|170034|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=753bp|location=Sequence derived from alignment at Contig_68:352837..354687+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCTTCGACTGACGTGCAGTGCAAATTGGTCCTAGTGGGCAATGG
GTCCGTCGGCAAAAGCAGCATCATCGCACGCTTTGTGGACGACGGATTTC
ACTGCGTGTACCGGCAAACAGTTGGCGTCGACTTCTTCGAGAAGCAGGTC
ACCGTGCGCAACAGCCTGACACTGAGCTTGCAAGTCTGGGACATTGGCGG
CCAGAGTCTGTCGAGCAACATGCTGGCAAAGTACCTCTACGGCAGCCGAG
TGGTGTTCCTGTGCTACGACGTCACGGATCCAAACTCCTTCAGTGACCTG
GATGACTGGCTGCGCATCGTCCGGAAACACTTCGGAGGGAGCGGCGCGGA
ACGCAGTTCAGATCAGCAGTTGAAGCAGGTCGACATTTACCTCGTGGCAA
ATAAGATAGACTTGCTGGACCTGCGTCGGGTCAAAGAGGCCCAGCACTGG
AGCTTCGTGTCGGAGCACAACCTCTGCGGCGGCATGCTGTGCAGCGCGCA
GAGCGGACAGAACGTCGTGCGCGCCTTCAACCACGTCGCCGCGCAGGCCG
CGGGCGTGAGGCTCTCAGAGTACGAGCTCGCGTTCTACGACAGGGTGCTC
GACGTGACGCGGCACGACGAGCCGGCGGCTTCAAAGGGCGGCGGCGGCGG
CGCGGCGGACAGCGGGCGCACCGCGATGGCGGACGCCATCGAGGCGGAGG
ACCTGGCGCTGGAGGCGGCGAAGGCCGCAAAGAGGTCGTGCATGTGCATG
TGA
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