mRNA_7966 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|100104
Unique NamemRNA_7966
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: A0A836C765_9STRA (LITAF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C765_9STRA)

HSP 1 Score: 309 bits (791), Expect = 4.280e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:  157 MVRSTPQDDPTYKPPSENPAYAQAAPYQPEQAYVMEGAAVQTGPAQQQPYQAYAVPVQNPGVPGVQVVGQPVVTGQPSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCRRAL 600
            MVRSTPQDDPTYKPPSENPAYAQAAPYQPEQAYVMEGAAVQTGPAQQQPYQAYAVPVQNPGVPGVQVVGQPVVTGQPSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCRRAL
Sbjct:    1 MVRSTPQDDPTYKPPSENPAYAQAAPYQPEQAYVMEGAAVQTGPAQQQPYQAYAVPVQNPGVPGVQVVGQPVVTGQPSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCRRAL 148
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: A0A6P8HUX7_ACTTE (cell death-inducing p53-target protein 1 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HUX7_ACTTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.640e-9
Identity = 30/57 (52.63%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:  424 CRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCRR 594
            C +C     V      PG +AW  C VLF VFWP CWLPFVID C D    C NCRR
Sbjct:   86 CPHC-QASIVTATEYVPGSLAWIICVVLFFVFWPCCWLPFVIDGCKDVLHSCPNCRR 141
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: UPI000A2A664D (cell death-inducing p53-target protein 1 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A664D)

HSP 1 Score: 62.8 bits (151), Expect = 8.040e-9
Identity = 31/76 (40.79%), Postives = 37/76 (48.68%), Query Frame = 1 
Query:  364 QPVVTGQPSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCR 591
            QPV T    +        + C +C     +      PG +AW  C VLF +FWP CWLPFVID C D    C NCR
Sbjct:   64 QPVTTIVTGAMFGEAPVSMVCPHC-RASIITATEYVPGTLAWIICLVLFFLFWPCCWLPFVIDGCKDVLHSCPNCR 138
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: A0A1D1Y5Q0_9ARAE (LITAF domain-containing protein (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y5Q0_9ARAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.170e-5
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:  385 PSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCRR 594
            P +   VV  G  C +C      +T N  PG  ++    ++FL+FWPLCW+P V   C+D + +C NC R
Sbjct:  238 PPNVNPVVVTGYVCPHCNSNLTPIT-NYTPGTASYISGVLIFLIFWPLCWVPCVSRTCLDEKDVCRNCNR 306
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: A0A8C6TYJ5_9GOBI (Si:ch211-202h22.8 n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6TYJ5_9GOBI)

HSP 1 Score: 53.5 bits (127), Expect = 1.660e-5
Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 1 
Query:  358 VGQPVVTGQPSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVL-FLVFWPLCWLPFVIDACMDREIICSNCRRAL 600
            V QPVV  QP+         + C +C      VT+ +  G + W  C ++   +FWP CW+PFVIDAC D E  C  C   L
Sbjct:   57 VVQPVVLVQPTPTDCPGQ--MMCPHCQSHVVTVTEYKN-GALTWLICGIIGIFLFWPCCWIPFVIDACKDVEHTCPQCHNVL 135
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: A0A7S1Y9N8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y9N8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.980e-5
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:  421 TCRYCGHTGPVVTQNRG-PGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNC 588
            TC  C    P VT+ R  P F+ W  C VLF++FWP+ W+P V D+C   +  CS C
Sbjct:   79 TCPVCNV--PSVTRVRTYPDFLTWILCIVLFVLFWPIFWIPLVCDSCKMTKHYCSQC 133
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BLAST of jgi.p|Trimin1|100104 vs. uniprot
Match: A0A7S4RD72_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RD72_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.540e-5
Identity = 24/75 (32.00%), Postives = 36/75 (48.00%), Query Frame = 1 
Query:  364 QPVVTGQPSSAIYVVHQGVTCRYCGHTGPVVTQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNC 588
            Q  + G P+   + +  G +C +CG           P F  W    VL ++FWPLCWLP V+D     +  C++C
Sbjct:   63 QSAIIGGPTFRRFPIMIG-SCPHCGIRNTRTKTRTYPNFATWALAGVLLILFWPLCWLPLVMDKTKKTDHFCTSC 136
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|100104 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836C765_9STRA4.280e-105100.00LITAF domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6P8HUX7_ACTTE1.640e-952.63cell death-inducing p53-target protein 1 homolog n... [more]
UPI000A2A664D8.040e-940.79cell death-inducing p53-target protein 1 homolog n... [more]
A0A1D1Y5Q0_9ARAE1.170e-537.14LITAF domain-containing protein (Fragment) n=1 Tax... [more]
A0A8C6TYJ5_9GOBI1.660e-537.80Si:ch211-202h22.8 n=1 Tax=Neogobius melanostomus T... [more]
A0A7S1Y9N8_9STRA1.980e-543.86Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4RD72_9STRA7.540e-532.00Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:287936..289848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|100104|CE100103_35
DescriptionPossible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CHAU@1|root,2S3NX@2759|Eukaryota
Evalue8.99e-10
Seed ortholog45351.EDO42963
Hectar predicted targeting categoryother localisation
TranscriptId100426
TrackFilteredModels1
ProteinId100104
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|100104gene_7966Tribonema minus UTEX_B_3156 geneContig_94 287936..289848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|100104Trimin1|100104|CE100103_35Tribonema minus UTEX_B_3156 polypeptideContig_94 288052..289257 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7966_4exon_7966_4Tribonema minus UTEX_B_3156 exonContig_94 287936..288100 -
exon_7966_3exon_7966_3Tribonema minus UTEX_B_3156 exonContig_94 288407..288475 -
exon_7966_2exon_7966_2Tribonema minus UTEX_B_3156 exonContig_94 288929..289296 -
exon_7966_1exon_7966_1Tribonema minus UTEX_B_3156 exonContig_94 289732..289848 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7966UTR3_7966Tribonema minus UTEX_B_3156 three_prime_UTRContig_94 287936..288051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7966CDS_7966Tribonema minus UTEX_B_3156 CDSContig_94 288929..289257 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7966UTR5_7966Tribonema minus UTEX_B_3156 five_prime_UTRContig_94 289732..289848 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7966 ID=mRNA_7966|Name=jgi.p|Trimin1|100104|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=719bp|location=Sequence derived from alignment at Contig_94:287936..289848- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGAGGTTCATCAGAGGATCGGCGGAGCTAGGAGAGCGGCGTGCAGTTATC
ATAAAAGACTTGGGCGAAGCTCTACCGTGCTGGTGCAGGAGCGCAGGATC
GTGCCTTGGCCTACGAGCCAACATCCCCCAACCGCAGCAGCAACAAGTAG
ACAGAGATGGTCCGGTCCACCCCCCAAGATGACCCAACATACAAGCCCCC
CAGCGAAAACCCCGCCTACGCACAGGCGGCGCCATACCAGCCGGAGCAAG
CCTATGTCATGGAGGGCGCCGCGGTGCAGACGGGCCCCGCACAGCAGCAG
CCCTACCAGGCATACGCTGTGCCGGTACAGAACCCTGGCGTACCGGGCGT
GCAGGTCGTGGGACAGCCGGTGGTGACGGGGCAGCCGAGCTCGGCCATCT
ACGTCGTGCACCAGGGGGTCACGTGCAGATACTGCGGCCACACGGGGCCC
GTCGTCACGCAGAACAGGGGGCCGGGCTTCGTAGCGTGGTGCTGGTGCTT
CGTCCTCTTCCTGGTTTTCTGGCCGCTGTGCTGGCTCCCATTCGTCATTG
ACGCGTGCATGGACCGCGAAATCATATGCTCAAACTGCAGGAGAGCCCTG
TAGAACAGATCGCTGCAGCGCAAAAGGAGAGGCCGGCTTGCTCCTGCTCC
TGGAATCGCTAGCACGCATTTATCGGGTTCCCCAAGCGCAGCGGCATCGG
GCGCACCGGCAGAAGCGTT
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protein sequence of jgi.p|Trimin1|100104

>Trimin1|100104|CE100103_35 ID=Trimin1|100104|CE100103_35|Name=jgi.p|Trimin1|100104|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp
MVRSTPQDDPTYKPPSENPAYAQAAPYQPEQAYVMEGAAVQTGPAQQQPY
QAYAVPVQNPGVPGVQVVGQPVVTGQPSSAIYVVHQGVTCRYCGHTGPVV
TQNRGPGFVAWCWCFVLFLVFWPLCWLPFVIDACMDREIICSNCRRAL*
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mRNA from alignment at Contig_94:287936..289848-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7966 ID=mRNA_7966|Name=jgi.p|Trimin1|100104|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1913bp|location=Sequence derived from alignment at Contig_94:287936..289848- (Tribonema minus UTEX_B_3156 )
CGAGGTTCATCAGAGGATCGGCGGAGCTAGGAGAGCGGCGTGCAGTTATC
ATAAAAGACTTGGGCGAAGCTCTACCGTGCTGGTGCAGGAGCGCAGGATC
GTGCCTTGGCCTACGAGGCAAGCGATTTTTTTCTGCTTTTTCTAGCACTG
CTACATGCTGCCTTGTTTAAGGGTGCACATATGACGTTGTAGGTTGCTAA
AAGTATAATTACTTGTAAAGCTGGTGGAAGCTGAGAATAGCGTGGACATT
TTCACATGGCTGTTTTTGTCTGAATGCTGCGCTCTTTGGTGCTCACTATG
TAGCGATTGCAACGCAATGATAGGCACCTGGCGGCTGAACAGCAGCTGAA
CGAATAAGGTTTATCTCTCTATTGTTAATGGTGCATCCAACGGCTGCTGC
TGGATGCCTTTTGATGATTGACTTTAGAAAACGTTGAAGTGCGGGTTGAA
AAAGGACAAAATCAATTGACTGAGCTTATTGGCTGCAGCAAAGATTTGAA
AGTGTTGTTCTTCCCGTGCGCCTCGCCGCCCTGCTGCTCCTTGATCTCAC
AGCCAACATCCCCCAACCGCAGCAGCAACAAGTAGACAGAGATGGTCCGG
TCCACCCCCCAAGATGACCCAACATACAAGCCCCCCAGCGAAAACCCCGC
CTACGCACAGGCGGCGCCATACCAGCCGGAGCAAGCCTATGTCATGGAGG
GCGCCGCGGTGCAGACGGGCCCCGCACAGCAGCAGCCCTACCAGGCATAC
GCTGTGCCGGTACAGAACCCTGGCGTACCGGGCGTGCAGGTCGTGGGACA
GCCGGTGGTGACGGGGCAGCCGAGCTCGGCCATCTACGTCGTGCACCAGG
GGGTCACGTGCAGATACTGCGGCCACACGGGGCCCGTCGTCACGCAGAAC
AGGGGGCCGGGCTTCGTAGCGTGAGTGCAACGCAGCGCCTTGTACTGGCG
GCCTGTAGGCCTCGCGTCCGCTTGCTGCGCGGCAACGATGGCACATTCCT
ATGTGTATTTCCAAGTGTATCAGGCACAAGCATGCTTAACAGCAGAACGC
CCACATGGGCGTACCATGCATATCACTTGCAAGCTTACACCTGTGTGTGT
CGGTGTACACAGCAGCTTGTAGGAGTAATGGGACACAGCATCATTTTTCT
CGTGTACTTGCACTGGAGCACGTGCGCTGATGGGCTTGTCTCGTGCAGCA
CGTAGTGGTAGCGTCAGCATGCACTCTGCGTTCTGGTGGCAGCGGCCCCT
GCGCCATGCGCTGCCGCGCTCAGCGCGTGGTTTCCAAACCAAACAGCAAT
TGACGTTGTTGCACCGCCATCGCTTTCTCTGGTCTCAAATATCACATGTG
ACTGCCTTGTGCCGCTGCTGCAGGTGGTGCTGGTGCTTCGTCCTCTTCCT
GGTTTTCTGGCCGCTGTGCTGGCTCCCATTCGTCATTGACGCGTAAGTCA
ACGCCTGCCCGCCTGTCTGCCTGCGTGCCTGCGAGCCTGCCGGTTGCAGA
AAATGTTTGAATGGGGCACAGGCCTGTCATGCATCACCAATATCATCTCA
GTAAGCCACCACTGCAACATGCGGCTGCTCGATCCTCCTTGCATGCCAGT
ACAAGGAGCCTTTTCATGATCAGCTCTAAAAGTATAATGAACGTCAGGTT
GCGCAATCGCCCCTCGTGCATGGGGCAATGCCAGCGCTTATCCGTGCCGT
CGCCGCACAACGCTAACCAGCTTCTGCCGCTTTTGCTGCCGCTTGCAGGT
GCATGGACCGCGAAATCATATGCTCAAACTGCAGGAGAGCCCTGTAGAAC
AGATCGCTGCAGCGCAAAAGGAGAGGCCGGCTTGCTCCTGCTCCTGGAAT
CGCTAGCACGCATTTATCGGGTTCCCCAAGCGCAGCGGCATCGGGCGCAC
CGGCAGAAGCGTT
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Coding sequence (CDS) from alignment at Contig_94:287936..289848-

>mRNA_7966 ID=mRNA_7966|Name=jgi.p|Trimin1|100104|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_94:287936..289848- (Tribonema minus UTEX_B_3156 )
ATGGTCCGGTCCACCCCCCAAGATGACCCAACATACAAGCCCCCCAGCGA
AAACCCCGCCTACGCACAGGCGGCGCCATACCAGCCGGAGCAAGCCTATG
TCATGGAGGGCGCCGCGGTGCAGACGGGCCCCGCACAGCAGCAGCCCTAC
CAGGCATACGCTGTGCCGGTACAGAACCCTGGCGTACCGGGCGTGCAGGT
CGTGGGACAGCCGGTGGTGACGGGGCAGCCGAGCTCGGCCATCTACGTCG
TGCACCAGGGGGTCACGTGCAGATACTGCGGCCACACGGGGCCCGTCGTC
ACGCAGAACAGGGGGCCGGGCTTCGTAGCGTGGTGCTGGTGCTTCGTCCT
CTTCCTGGTTTTCTGGCCGCTGTGCTGGCTCCCATTCGTCATTGACGCGT
GCATGGACCGCGAAATCATATGCTCAAACTGCAGGAGAGCCCTGTAG
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