mRNA_7784 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A836CDR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR8_9STRA) HSP 1 Score: 381 bits (979), Expect = 1.580e-131 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1 Query: 4 MQRSGGNALVGLACFAGGAAVASALHYRQQQKHLAEVEQARAATVATLRSEIAELTQAKHQLSETLATVQAQHALLRNDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDIAASYIEDLESTLQKLQAQKPPQSPAPAAAASASPPRTPSKADRAASMDSHGDDDSDGNTTXXXXXXXXXXXXXXXXPNHDAFATAGRGAPAHGGAPRLSSGSGSMAKCLQEELMDIEHDGRGSKAASKDAAAAPARAWGVLNYLTSGGR 792 MQRSGGNALVGLACFAGGAAVASALHYRQQQKHLAEVEQARAATVATLRSEIAELTQAKHQLSETLATVQAQHALLRNDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDIAASYIEDLESTLQKLQAQKPPQSPAPAAAASASPPRTPSKADRAASMDSHGDDDSDGNTTXXXXXXXXXXXXXXXXPNHDAFATAGRGAPAHGGAPRLSSGSGSMAKCLQEELMDIEHDGRGSKAASKDAAAAPARAWGVLNYLTSGGR Sbjct: 1 MQRSGGNALVGLACFAGGAAVASALHYRQQQKHLAEVEQARAATVATLRSEIAELTQAKHQLSETLATVQAQHALLRNDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDIAASYIEDLESTLQKLQAQKPPQSPAPAAAASASPPRTPSKADRAASMDSHGDDDSDGNTTXXXXXXXXXXXXXXXXPNHDAFATAGRGAPAHGGAPRLSSGSGSMAKCLQEELMDIEHDGRGSKAASKDAAAAPARAWGVLNYLTSGGR 263
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A835Z5C8_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C8_9STRA) HSP 1 Score: 563 bits (1451), Expect = 2.830e-199 Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 1 Query: 1 MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF 1167 MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF Sbjct: 1 MNVPWPCSKLARRYALELALWRGIATEAIGMTFFLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPRF 389
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A836CE69_9STRA (Transmembrane channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE69_9STRA) HSP 1 Score: 198 bits (503), Expect = 7.430e-57 Identity = 127/338 (37.57%), Postives = 167/338 (49.41%), Query Frame = 1 Query: 178 ITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAE--------SDKHRFNIKALVEPRF 1167 IT+IAYN G D K+L IA VFG SIF +LVY T+G+S GNLNPAVTF+LV+GKR+S +G+ YI +Q GA +GT FA +AG FN V+GG NI++ GV+ Q F E L T ++CLAV++GLS +LW LM T MD LP VG + ++H+V+IPIDGCS+NPARS+G A+++G W M IFW GPLIGG AILLWEL++RPPQ + ++ SD+ + +V RF Sbjct: 74 ITVIAYNDDGQLVGIDSD--KQLLIALVFGLSIF------------------------------------MLVYFTAGLSG----------------------GNLNPAVTFSLVIGKRISVARGICYIASQMVGAIVGTAFA-------------LVIAGSDKFNAVNGGANILAVGVSAGQALFAE-----ILSTAMVCLAVIIGLSSELWHLMEKTG----------------MDILLPIAVGTAIVLAHMVLIPIDGCSVNPARSFGAAVISGEWADMWIFWVGPLIGGLVAILLWELILRPPQEVSRSAHTRRSSDASDRPVRRLAKVVSARF 317
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A835Z4I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I3_9STRA) HSP 1 Score: 182 bits (463), Expect = 3.530e-47 Identity = 122/366 (33.33%), Postives = 167/366 (45.63%), Query Frame = 1 Query: 76 TEAIGMTF---FLQIDAXXXXXXXXXXXXXXXXXFLTITLIAYNATRLANGYDQGGIKELTIAFVFGFSIFXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXVLVYITSGISSXXXXXXXXXXXXXXXXXXXXXXGNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVEPR 1164 T+A G+T F +D+ F TL++ + A+ +D GGI+++ I+ +FG +F VLVY+T+ +S GNLNPAVT ALV+GKR+S ++G+ Y+++QC GA G LFA+ VAG FN +GG N + ++ FG+ GE +CT LC+ VLVGLS +LW LM K + LP VG V +SH+VM+PIDG SINPARS+GPA V G W A FW GPL+G A+LLWE V+RPP +P +S L R Sbjct: 706 TKAKGVTLKRKFQDVDSFFWRAVLVEGLGVAVFLFCVCTLLSATS---ASDFD-GGIQQILISMIFGLVLF------------------------------------VLVYLTATLSG----------------------GNLNPAVTAALVIGKRISLVRGLCYVVSQCIGAIFGALFAK-------------IVAGPDAFNAANGGSNSLQENIS-----FGQALCGEIICTAFLCVVVLVGLSNELWELMPKAK----------------VHLLLPLAVGGVVAVSHLVMVPIDGTSINPARSFGPAAVAGQWSNHACFWVGPLLGSLVAVLLWEGVLRPPAAVPTEDSSSSSATSSQLENGR 975
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A835YY46_9STRA (Aquaporin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY46_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.050e-31 Identity = 79/212 (37.26%), Postives = 111/212 (52.36%), Query Frame = 1 Query: 490 NLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESD 1125 N+NPAV++ L LGKR++ + LYIIAQC GA +G A + ++ F +GG N+++ V Q GE LCT LL VL + L Y +A LP+V+GMTV + H ++P+DGCSINPARS+G A++T W +FW GPLIG A LL+E ++RPP+ PK E++ Sbjct: 95 NINPAVSWGLCLGKRITLKRCGLYIIAQCLGAIIGVGLACSMS--------------KAHFWETNGGANVVNNQVGAHQALGGE-----ILCTWLLVTVVLCATNPGLQK-AYVHQAVL-----------------LPWVIGMTVMLCHFTLVPVDGCSINPARSFGSAIITNTWKDHWVFWLGPLIGATIATLLFEAILRPPEPAPKLEAE 269
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A835Z3D0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3D0_9STRA) HSP 1 Score: 129 bits (323), Expect = 7.800e-31 Identity = 74/207 (35.75%), Postives = 97/207 (46.86%), Query Frame = 1 Query: 487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTL 1107 GNLNPAVT ALV+GKR+S ++G+ YI++Q +CT LLC VLVGLS +LW LM K + LP VG V ++H++M+PIDG SINPARS+GPA V G W + A FW GPL+G +++LWE V+RPPQ + Sbjct: 123 GNLNPAVTAALVMGKRISLVRGLCYIVSQ-------------------------------------------------------------IICTALLCTTVLVGLSNELWELMPKAK----------------VHLLLPMAVGSAVAVAHLIMVPIDGTSINPARSFGPAAVAGQWSSHACFWVGPLLGALVSVILWEAVLRPPQAM 252
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: I0ZAA7_COCSC (Plasma membrane intrinsic protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZAA7_COCSC) HSP 1 Score: 120 bits (300), Expect = 2.130e-27 Identity = 75/226 (33.19%), Postives = 109/226 (48.23%), Query Frame = 1 Query: 487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPS-FG-EFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVE 1158 G++NPAVTF + + +++S L+ VLY++AQC GA G R + G+ GG N +S G FGE + +G E + TM L V + T + PF +GM VF+ H+V IP+DGCSINPARS+G A V+G+WD +FW GPL G A ++EL+ R KA + F+++ V+ Sbjct: 102 GHINPAVTFGMFVARKISVLRAVLYMVAQCLGACTGAGLVR--------------AIDDDGWRAAGGGANALSPG-------FGEAAGWGLETILTMALVFTVFAATDSERAT------------------DTAHLPVLAPFAIGMVVFLCHLVAIPLDGCSINPARSFGAAAVSGSWDNQWVFWVGPLSGAVLAAAIYELIFRTKAH--KAVAHPSEFDVERGVK 286
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A6H5JZJ3_9PHAE (Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ3_9PHAE) HSP 1 Score: 123 bits (308), Expect = 2.910e-27 Identity = 75/223 (33.63%), Postives = 106/223 (47.53%), Query Frame = 1 Query: 490 NLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVE 1158 +LNPAV+ +L++GKR+S + LY++AQ G +G A + + GG N I+ GV+ + F E LCT LL + V G+L T LP V+GM V I+H+V+IPIDGCSINPARS+ A++ WD +FW GPL+GG WE ++RP QT+ D+H + E Sbjct: 337 HLNPAVSMSLLVGKRISIERFGLYVVAQMAGGVIGASMANSFP------------------STTGGGFNAIADGVSAIEAFGAE-----VLCTFLLVVTVFTACDGELGRKNAHTGPL------------------LPLVIGMAVLIAHLVLIPIDGCSINPARSFATAVINNKWDDHWVFWVGPLLGGVLGTATWEAILRPDQTV----DDEHEVFLDMKKE 514
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A6H5KIW5_9PHAE (Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIW5_9PHAE) HSP 1 Score: 115 bits (288), Expect = 5.190e-26 Identity = 70/218 (32.11%), Postives = 102/218 (46.79%), Query Frame = 1 Query: 490 NLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNI 1143 +LNPAV+ L++GKR+S + +LY+IAQ GAT G A + GG N ++ V+ F E LCT LL + V G+L T LP V+GM V ++H+V+IPIDG SINPARS+ A+ W +FW GPL+GG A + WE ++RP Q + + ++ ++ Sbjct: 102 HLNPAVSIGLLVGKRISVERFLLYVIAQMAGATAGAGIASTY------------------LSTTRGGFNALADNVSATDAFGAE-----VLCTFLLVVTVFAACDGELGRKTAHTGPL------------------LPLVIGMAVLLAHLVLIPIDGASINPARSFATAVTNNEWGDHWVFWVGPLLGGVLATVTWEAILRPDQVVEQEKNVPQAISV 278
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A8J9WPI2_9CHLO (Aquaporin PIP2-5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WPI2_9CHLO) HSP 1 Score: 115 bits (289), Expect = 7.480e-26 Identity = 73/225 (32.44%), Postives = 102/225 (45.33%), Query Frame = 1 Query: 487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSGGVNIISTGVTDAQTFFGEPSFG-EFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLWELVMRPPQTLPKAESDKHRFNIKALVE 1158 G++NPAVTF +++ +++S + VLYI+AQC GA G + G+ GG N +S GV +A +G E + TM L V + + PF +GM VF+ H+V IP+DGCSINPARS+G A V G WD +FW GPL G A +EL R KA + F+I+ V+ Sbjct: 101 GHINPAVTFGMLVARKISVSRAVLYIVAQCLGACTGAGLVK--------------AIDTHGWRAAGGGTNALSAGVNNAA------GWGLETILTMALVFTVFAATDAE------------------RASDTAHLPVLAPFAIGMVVFLCHLVAIPLDGCSINPARSFGAAAVAGKWDDQWVFWVGPLCGAVMAATAYELFFRTKPN--KAVAHPSDFDIEGGVK 285
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Match: A0A1X2I9S4_9FUNG (Aquaporin-like protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I9S4_9FUNG) HSP 1 Score: 110 bits (276), Expect = 6.200e-24 Identity = 73/201 (36.32%), Postives = 99/201 (49.25%), Query Frame = 1 Query: 487 GNLNPAVTFALVLGKRMSALQGVLYIIAQCFGATLGTLFARNXXXXXXXXXXXXXVAGESGFNLVSG----GVNIISTGVTDAQTFFGEPSFGEFLCTMLLCLAVLVGLSGDLWTLMYPTKACCGLSXXXXXXXXXXMDFNLPFVVGMTVFISHIVMIPIDGCSINPARSWGPALVTGNWDTMAIFWFGPLIGGAGAILLW 1077 G LNPAV +L+L ++++ L+G+ I + GA LG FA N V+ GVN++ G AQ FF E L T +LC+ +L + D Y +C PFVVG+T+F+ H+V PIDG S+NPARS+GPA+VTG W IFWFGPLIG A L++ Sbjct: 89 GALNPAVLLSLMLCRKVNWLRGLFMFIGELVGAILGAYFA----------------------NFVTANELQGVNLLKPGFNYAQGFFAE-----LLLTCVLCVVILFVIVED----QYSAPSCN------------------PFVVGITLFMIHLVGTPIDGTSVNPARSFGPAIVTGKWANHWIFWFGPLIGAFFAFLIY 240 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|349088 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7784 ID=mRNA_7784|Name=jgi.p|Trimin1|349088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_35:896030..896824+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCATGCAGAGGTCTGGGGGCAACGCTTTGGTGGGCCTGGCATGTTTCGCback to top protein sequence of jgi.p|Trimin1|349088 >Trimin1|349088|estExt_Genemark1.C_Ctg_350101 ID=Trimin1|349088|estExt_Genemark1.C_Ctg_350101|Name=jgi.p|Trimin1|349088|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp MQRSGGNALVGLACFAGGAAVASALHYRQQQKHLAEVEQARAATVATLRSback to top mRNA from alignment at Contig_35:896030..896824+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7784 ID=mRNA_7784|Name=jgi.p|Trimin1|349088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_35:896030..896824+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_35:896030..896824+ >mRNA_7784 ID=mRNA_7784|Name=jgi.p|Trimin1|349088|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_35:896030..896824+ (Tribonema minus UTEX_B_3156 )back to top |