mRNA_7759 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835Z2R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R4_9STRA) HSP 1 Score: 589 bits (1519), Expect = 1.890e-211 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDEVTCRPTCMP 927 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDEVTCRPTCMP Sbjct: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDEVTCRPTCMP 309
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A836CE99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE99_9STRA) HSP 1 Score: 261 bits (668), Expect = 3.690e-78 Identity = 202/513 (39.38%), Postives = 215/513 (41.91%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKIN--------DAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLT------------------------------------------------------------------AMGVQDCY--------------------TADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRS---------------------------------------------------------------------------------------------------------HGDV----------------------------------PDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGP 840 MLGRGYWLPVAGVSRGVRAAYTRELL+G GDS GGGC WLCRTSL AVLQSDA FRM LSV AG DSAAKIN DAGLLQLL+ES AR AVGK QLSC LIRDAVTA LPLDG+TL GAAERGCEAAL QWH LL+ A+G D + DLNAFRQAM PFGAV TDLLYFM + AAVTHTL+D AI F Q EFVTLLSRS H + PD RSV++L SQ D PWGPWTSAECEIMRS+AERL+ ERA MR LHELGCPC P Sbjct: 151 MLGRGYWLPVAGVSRGVRAAYTRELLKGRGDSGKGGGCVWLCRTSLGAVLQSDAVFRM---LSVAAGTDSAAKINCHLSIPYQDAGLLQLLQESQTARLAVGKGQLSCSLIRDAVTAGLPLDGYTLVGAAERGCEAALNQWHTLLSDSPQWHAQEAWVLPVMALCALDAKERPSVLAVLRWVFRTATRQVGGSTSEAQLPPLLLTVLAFKCAALGDFDTFRWLYADGRQLTKQDIHAHVPVPDLNAFRQAMDPFGAV-------------HTDLLYFMLKRHDAAVTHTLVDIAIAFTQGEFVTLLSRSDVSAPLSAFKHFSAAVAAHSNNLGLLQWPHAHPGCTFNSHQVIRQFLITRKAPRQSSGTAAVTVAQHTLDALKWLRDIGAFEAATQIDLTTMVTKTATSYAAWLCHSSLVKLQWLLHKMGAAWPNGGAALIVRSMARLNQRQEPDPRSVLALVSQLDCPWGPWTSAECEIMRSNAERLMI---ERAALMRRLHELGCPCACARP 644
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A836CBK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK6_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.870e-39 Identity = 136/334 (40.72%), Postives = 160/334 (47.90%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGG-----CAWLCRTSLSAVLQSDAAFRMALDLS------VPAGMDSAA---KINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWH--------------------------ALLTAMGVQDC-----------YT----------------ADLNAFRQ-AMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTH--TLMDTAIGFRQDEFVTLLSRSHGDV-PDL-----RSVVSLASQFDWPWGPWTSAECEI-MRSSAERLIAS 771 MLGRGYWL VA VSRG+R YTRELL GG SS GGG CAWLCRTS+SAVL SDA RMALD+ VPAG + +I+D L LL SP VG+ QLSC +IRDA++A L +DGH L GAAERGCEAAL QWH LLT + + YT ADL AF++ + PF A TD L F+K + TLMD+AI F Q++FV LSR DV P+L RS V AS W + SAE +IAS Sbjct: 175 MLGRGYWLTVASVSRGIRTVYTRELLCGGSSSSNGGGSGDSDCAWLCRTSVSAVLHSDAVLRMALDMQAISLNPVPAGTAPSPAGWRISDDSLTTLLNNSPRTMVQVGRAQLSCNMIRDAMSAGLLVDGHALVGAAERGCEAALNQWHRSLAQRPAWRAQRSWVLPGAEVQLPPVLLTLLACKCARYGDFDTFRWLYTEGQRLAQQDITVKLSAADLKAFKEEVVVPFRAAC-------------TDDLLFLKVLTTGITKNICTLMDSAILFGQEKFVVALSRF--DVAPELSCFTPRSAVFAASCASLSLLQWLHGQSACPFDGSAEVIIAS 493
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835Z483_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z483_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.420e-31 Identity = 68/82 (82.93%), Postives = 70/82 (85.37%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSS-------IGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKIN 225 MLGRGYWLPVAGVSRGVRAAYTRELL+GGGDSS CAWLCRTSLSAVLQSDA FRMALDL+VPAGMDSAAKIN Sbjct: 143 MLGRGYWLPVAGVSRGVRAAYTRELLEGGGDSSKXXXXXXXXXXCAWLCRTSLSAVLQSDAVFRMALDLAVPAGMDSAAKIN 224
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835YRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE2_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.280e-30 Identity = 120/383 (31.33%), Postives = 146/383 (38.12%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHA-------------------LLTAMGVQD-----------------------------------------------CYT----------------ADLNAFR-QAMGPFGAVXXXXXXXXXXXXVRTDLLYFMK--ENPGAAVTH-TLMDTAIGFRQDEFVTLLSR-----------------SH----GDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAE-CMRLLHELGCPC 825 MLGRGYWL VA VSRG+RAAYT+ELL D L LL S G+ +LSC +I DA+ A L +DGH L GAAERGCEAAL QWH +L A+GV++ YT ADL AF+ + + PF A RTD L F+K G A T TLMD+AI F Q+EFV LSR +H G D R VV + S PWGPWTSAEC ++R+ + A P + A+ M+ LH LGCPC Sbjct: 41 MLGRGYWLTVASVSRGIRAAYTKELL-------------------------------------------------DGALTTLLNNSSRTMVQAGRAELSCDMIGDAIDAGLDVDGHVLIGAAERGCEAALNQWHLSLSQWPAWHTQLSYVLPVMVLRAIGVKERPEALEVLRWVFNTAISKRAEVQLPQVLLTLLAFKCARYGHFDTFCWLYTEGRRLAQQDITVTVSEADLKAFKDEVLAPFRAA-------------RTDELSFIKVLRTDGTARTLCTLMDSAIWFGQEEFVAALSRIQWLQNEMGADWPHDGAAHIVRKGKDVDARGVVRMVSDLACPWGPWTSAECALLRTRPQHRSAVPPQSAQHWMQQLHALGCPC 361
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835YNS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS9_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.210e-28 Identity = 81/170 (47.65%), Postives = 95/170 (55.88%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGG-----------------------CAWLCRTSLSAVLQSDAAFRMALDLS------VPAGMDSAA---KINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLT 414 MLGRGYWLPVA VSRG+ AAYT+ELL GG S GG CAWLCRT +SA L SD+ FRMALD+ V AG S+ IND L LL P VG+ LS +IRDA+ A + +DGH L GAAERG ++AL QWH L+ Sbjct: 167 MLGRGYWLPVASVSRGISAAYTKELLCGGSSRSNGGSXXXXXXXXXXXXXXXXXXXXDPDCAWLCRTLVSAALHSDSVFRMALDMQAMPPSPVLAGKASSPARWSINDDSLTTLLSNRPRTMVRVGRAHLSSNVIRDAMDAGMVIDGHALVGAAERGRKSALDQWHQSLS 336
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835ZIW2_9STRA (DUF4524 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIW2_9STRA) HSP 1 Score: 122 bits (306), Expect = 9.050e-27 Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLS------VPAGMDSA---AKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQW 399 MLG G+WL VA VSRGVRAAYTRELL GGG W RT++SA LQSD+ FRMALD+ + A M ++ +I+D L LL S A+ A+G+ LSC I++A+ A L +D H L GAAERGC AAL QW Sbjct: 33 MLGHGHWLTVASVSRGVRAAYTRELLSGGGGGGPNCNLKWRSRTTVSAALQSDSTFRMALDIRAGAPDPILAAMTTSPAYGRIHDGALALLLSSSARAKVALGRAALSCVAIQEAMAAQLMVDAHVLLGAAERGCVAALDQW 174
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A836C8W5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W5_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.140e-21 Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIG--------GGCAWLCRTSLSAVLQSDAAFRMALDL-SVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQ-LSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQW 399 MLG GYWL VA ++RG+RAAYT+ELL G SS G C WLCRT+LS VLQSD+ FRMALD+ ++P P A+G+ LSC +I++A+ A L +DG L GAAER CE+AL QW Sbjct: 74 MLGPGYWLIVASINRGIRAAYTKELLSWGASSSXXXXGGRSSDGDCTWLCRTALSVVLQSDSVFRMALDIRAIP---------------------PAVHVALGRAAALSCVMIQEAMDAQLTVDGTVLIGAAERCCESALDQW 195
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835YYU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYU8_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.100e-17 Identity = 47/68 (69.12%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 658 PDLRSVVSLASQFDWPWGPWTSAECEIMRSSAER-------LIASPSERAECMRLLHELGCPCHARGP 840 PD RSVV L S+ PWGPWTSAECEIMRS+AER LIASPSERAE MR LHELGCPC P Sbjct: 286 PDPRSVVCLVSELGCPWGPWTSAECEIMRSNAERMRSNAEWLIASPSERAELMRRLHELGCPCACARP 353
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835ZHS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHS9_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 7.530e-13 Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDL 186 MLG G+WL VA VSR VRAAYTRELL GG S WL RT++SA LQSDAAFRMALD+ Sbjct: 176 MLGHGHWLTVASVSRAVRAAYTRELLSIGGGSGPNCNLKWLTRTAISAALQSDAAFRMALDI 237 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7759 ID=mRNA_7759|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1076bp|location=Sequence derived from alignment at Contig_35:697436..700625- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGGGGCGGGGGTATTGGCTGCCCGTTGCAGGCGTGAGCCGCGGCGTback to top protein sequence of jgi.p|Trimin1|349074 >Trimin1|349074|estExt_Genemark1.C_Ctg_350076 ID=Trimin1|349074|estExt_Genemark1.C_Ctg_350076|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=310bp MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLback to top mRNA from alignment at Contig_35:697436..700625- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3190bp|location=Sequence derived from alignment at Contig_35:697436..700625- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_35:697436..700625- >mRNA_7759 ID=mRNA_7759|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=930bp|location=Sequence derived from alignment at Contig_35:697436..700625- (Tribonema minus UTEX_B_3156 )back to top |