mRNA_7759 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349074
Unique NamemRNA_7759
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835Z2R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R4_9STRA)

HSP 1 Score: 589 bits (1519), Expect = 1.890e-211
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDEVTCRPTCMP 927
            MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDEVTCRPTCMP
Sbjct:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDEVTCRPTCMP 309          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A836CE99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE99_9STRA)

HSP 1 Score: 261 bits (668), Expect = 3.690e-78
Identity = 202/513 (39.38%), Postives = 215/513 (41.91%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKIN--------DAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLT------------------------------------------------------------------AMGVQDCY--------------------TADLNAFRQAMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTHTLMDTAIGFRQDEFVTLLSRS---------------------------------------------------------------------------------------------------------HGDV----------------------------------PDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAECMRLLHELGCPCHARGP 840
            MLGRGYWLPVAGVSRGVRAAYTRELL+G GDS  GGGC WLCRTSL AVLQSDA FRM   LSV AG DSAAKIN        DAGLLQLL+ES  AR AVGK QLSC LIRDAVTA LPLDG+TL GAAERGCEAAL QWH LL+                                                                  A+G  D +                      DLNAFRQAM PFGAV              TDLLYFM +   AAVTHTL+D AI F Q EFVTLLSRS                                                                                                         H  +                                  PD RSV++L SQ D PWGPWTSAECEIMRS+AERL+    ERA  MR LHELGCPC    P
Sbjct:  151 MLGRGYWLPVAGVSRGVRAAYTRELLKGRGDSGKGGGCVWLCRTSLGAVLQSDAVFRM---LSVAAGTDSAAKINCHLSIPYQDAGLLQLLQESQTARLAVGKGQLSCSLIRDAVTAGLPLDGYTLVGAAERGCEAALNQWHTLLSDSPQWHAQEAWVLPVMALCALDAKERPSVLAVLRWVFRTATRQVGGSTSEAQLPPLLLTVLAFKCAALGDFDTFRWLYADGRQLTKQDIHAHVPVPDLNAFRQAMDPFGAV-------------HTDLLYFMLKRHDAAVTHTLVDIAIAFTQGEFVTLLSRSDVSAPLSAFKHFSAAVAAHSNNLGLLQWPHAHPGCTFNSHQVIRQFLITRKAPRQSSGTAAVTVAQHTLDALKWLRDIGAFEAATQIDLTTMVTKTATSYAAWLCHSSLVKLQWLLHKMGAAWPNGGAALIVRSMARLNQRQEPDPRSVLALVSQLDCPWGPWTSAECEIMRSNAERLMI---ERAALMRRLHELGCPCACARP 644          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A836CBK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.870e-39
Identity = 136/334 (40.72%), Postives = 160/334 (47.90%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGG-----CAWLCRTSLSAVLQSDAAFRMALDLS------VPAGMDSAA---KINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWH--------------------------ALLTAMGVQDC-----------YT----------------ADLNAFRQ-AMGPFGAVXXXXXXXXXXXXVRTDLLYFMKENPGAAVTH--TLMDTAIGFRQDEFVTLLSRSHGDV-PDL-----RSVVSLASQFDWPWGPWTSAECEI-MRSSAERLIAS 771
            MLGRGYWL VA VSRG+R  YTRELL GG  SS GGG     CAWLCRTS+SAVL SDA  RMALD+       VPAG   +    +I+D  L  LL  SP     VG+ QLSC +IRDA++A L +DGH L GAAERGCEAAL QWH                           LLT +  +             YT                ADL AF++  + PF A               TD L F+K        +  TLMD+AI F Q++FV  LSR   DV P+L     RS V  AS        W   +       SAE +IAS
Sbjct:  175 MLGRGYWLTVASVSRGIRTVYTRELLCGGSSSSNGGGSGDSDCAWLCRTSVSAVLHSDAVLRMALDMQAISLNPVPAGTAPSPAGWRISDDSLTTLLNNSPRTMVQVGRAQLSCNMIRDAMSAGLLVDGHALVGAAERGCEAALNQWHRSLAQRPAWRAQRSWVLPGAEVQLPPVLLTLLACKCARYGDFDTFRWLYTEGQRLAQQDITVKLSAADLKAFKEEVVVPFRAAC-------------TDDLLFLKVLTTGITKNICTLMDSAILFGQEKFVVALSRF--DVAPELSCFTPRSAVFAASCASLSLLQWLHGQSACPFDGSAEVIIAS 493          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835Z483_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z483_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.420e-31
Identity = 68/82 (82.93%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSS-------IGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKIN 225
            MLGRGYWLPVAGVSRGVRAAYTRELL+GGGDSS           CAWLCRTSLSAVLQSDA FRMALDL+VPAGMDSAAKIN
Sbjct:  143 MLGRGYWLPVAGVSRGVRAAYTRELLEGGGDSSKXXXXXXXXXXCAWLCRTSLSAVLQSDAVFRMALDLAVPAGMDSAAKIN 224          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835YRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.280e-30
Identity = 120/383 (31.33%), Postives = 146/383 (38.12%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHA-------------------LLTAMGVQD-----------------------------------------------CYT----------------ADLNAFR-QAMGPFGAVXXXXXXXXXXXXVRTDLLYFMK--ENPGAAVTH-TLMDTAIGFRQDEFVTLLSR-----------------SH----GDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSSAERLIASPSERAE-CMRLLHELGCPC 825
            MLGRGYWL VA VSRG+RAAYT+ELL                                                 D  L  LL  S       G+ +LSC +I DA+ A L +DGH L GAAERGCEAAL QWH                    +L A+GV++                                                YT                ADL AF+ + + PF A              RTD L F+K     G A T  TLMD+AI F Q+EFV  LSR                 +H    G   D R VV + S    PWGPWTSAEC ++R+  +   A P + A+  M+ LH LGCPC
Sbjct:   41 MLGRGYWLTVASVSRGIRAAYTKELL-------------------------------------------------DGALTTLLNNSSRTMVQAGRAELSCDMIGDAIDAGLDVDGHVLIGAAERGCEAALNQWHLSLSQWPAWHTQLSYVLPVMVLRAIGVKERPEALEVLRWVFNTAISKRAEVQLPQVLLTLLAFKCARYGHFDTFCWLYTEGRRLAQQDITVTVSEADLKAFKDEVLAPFRAA-------------RTDELSFIKVLRTDGTARTLCTLMDSAIWFGQEEFVAALSRIQWLQNEMGADWPHDGAAHIVRKGKDVDARGVVRMVSDLACPWGPWTSAECALLRTRPQHRSAVPPQSAQHWMQQLHALGCPC 361          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835YNS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.210e-28
Identity = 81/170 (47.65%), Postives = 95/170 (55.88%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGG-----------------------CAWLCRTSLSAVLQSDAAFRMALDLS------VPAGMDSAA---KINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLT 414
            MLGRGYWLPVA VSRG+ AAYT+ELL GG   S GG                        CAWLCRT +SA L SD+ FRMALD+       V AG  S+     IND  L  LL   P     VG+  LS  +IRDA+ A + +DGH L GAAERG ++AL QWH  L+
Sbjct:  167 MLGRGYWLPVASVSRGISAAYTKELLCGGSSRSNGGSXXXXXXXXXXXXXXXXXXXXDPDCAWLCRTLVSAALHSDSVFRMALDMQAMPPSPVLAGKASSPARWSINDDSLTTLLSNRPRTMVRVGRAHLSSNVIRDAMDAGMVIDGHALVGAAERGRKSALDQWHQSLS 336          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835ZIW2_9STRA (DUF4524 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIW2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.050e-27
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDLS------VPAGMDSA---AKINDAGLLQLLEESPIARHAVGKEQLSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQW 399
            MLG G+WL VA VSRGVRAAYTRELL GGG         W  RT++SA LQSD+ FRMALD+       + A M ++    +I+D  L  LL  S  A+ A+G+  LSC  I++A+ A L +D H L GAAERGC AAL QW
Sbjct:   33 MLGHGHWLTVASVSRGVRAAYTRELLSGGGGGGPNCNLKWRSRTTVSAALQSDSTFRMALDIRAGAPDPILAAMTTSPAYGRIHDGALALLLSSSARAKVALGRAALSCVAIQEAMAAQLMVDAHVLLGAAERGCVAALDQW 174          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A836C8W5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.140e-21
Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIG--------GGCAWLCRTSLSAVLQSDAAFRMALDL-SVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQ-LSCGLIRDAVTAALPLDGHTLAGAAERGCEAALKQW 399
            MLG GYWL VA ++RG+RAAYT+ELL  G  SS          G C WLCRT+LS VLQSD+ FRMALD+ ++P                     P    A+G+   LSC +I++A+ A L +DG  L GAAER CE+AL QW
Sbjct:   74 MLGPGYWLIVASINRGIRAAYTKELLSWGASSSXXXXGGRSSDGDCTWLCRTALSVVLQSDSVFRMALDIRAIP---------------------PAVHVALGRAAALSCVMIQEAMDAQLTVDGTVLIGAAERCCESALDQW 195          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835YYU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYU8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-17
Identity = 47/68 (69.12%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  658 PDLRSVVSLASQFDWPWGPWTSAECEIMRSSAER-------LIASPSERAECMRLLHELGCPCHARGP 840
            PD RSVV L S+   PWGPWTSAECEIMRS+AER       LIASPSERAE MR LHELGCPC    P
Sbjct:  286 PDPRSVVCLVSELGCPWGPWTSAECEIMRSNAERMRSNAEWLIASPSERAELMRRLHELGCPCACARP 353          
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Match: A0A835ZHS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHS9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.530e-13
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVLQSDAAFRMALDL 186
            MLG G+WL VA VSR VRAAYTRELL  GG S       WL RT++SA LQSDAAFRMALD+
Sbjct:  176 MLGHGHWLTVASVSRAVRAAYTRELLSIGGGSGPNCNLKWLTRTAISAALQSDAAFRMALDI 237          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349074 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z2R4_9STRA1.890e-211100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE99_9STRA3.690e-7839.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBK6_9STRA1.870e-3940.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z483_9STRA4.420e-3182.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRE2_9STRA1.280e-3031.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNS9_9STRA1.210e-2847.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIW2_9STRA9.050e-2751.41DUF4524 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836C8W5_9STRA1.140e-2146.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYU8_9STRA1.100e-1769.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHS9_9STRA7.530e-1367.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:697436..700625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349074|estExt_Genemark1.C_Ctg_350076
Hectar predicted targeting categoryother localisation
TranscriptId349396
TrackFilteredModels1
ProteinId349074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349074gene_7759Tribonema minus UTEX_B_3156 geneContig_35 697436..700625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349074Trimin1|349074|estExt_Genemark1.C_Ctg_350076Tribonema minus UTEX_B_3156 polypeptideContig_35 697582..700625 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7759_5exon_7759_5Tribonema minus UTEX_B_3156 exonContig_35 697436..697863 -
exon_7759_4exon_7759_4Tribonema minus UTEX_B_3156 exonContig_35 698269..698471 -
exon_7759_3exon_7759_3Tribonema minus UTEX_B_3156 exonContig_35 698632..698666 -
exon_7759_2exon_7759_2Tribonema minus UTEX_B_3156 exonContig_35 698765..698949 -
exon_7759_1exon_7759_1Tribonema minus UTEX_B_3156 exonContig_35 700401..700625 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7759UTR3_7759Tribonema minus UTEX_B_3156 three_prime_UTRContig_35 697436..697581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7759CDS_7759Tribonema minus UTEX_B_3156 CDSContig_35 700401..700625 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1076bp|location=Sequence derived from alignment at Contig_35:697436..700625- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGGCGGGGGTATTGGCTGCCCGTTGCAGGCGTGAGCCGCGGCGT
GCGTGCGGCGTACACGAGAGAGCTGCTCCAAGGAGGCGGCGACAGCAGCA
TAGGCGGCGGGTGTGCGTGGCTGTGCCGCACATCTCTCAGCGCTGTGTTG
CAGTCAGATGCCGCGTTCCGCATGGCTTTGGACCTGTCGGTACCTGCTGG
AATGGATTCCGCGGCGAAGATCAATGACGCCGGTCTGCTGCAGCTGCTTG
AGGAGAGCCCAATTGCAAGGCACGCAGTGGGCAAAGAGCAGCTGTCGTGC
GGCTTGATTCGAGATGCGGTGACAGCAGCACTGCCGCTGGATGGCCACAC
GCTGGCCGGTGCTGCGGAGCGCGGCTGCGAGGCAGCGCTCAAACAGTGGC
ACGCGCTGCTTACTGCGATGGGTGTTCAGGACTGCTACACGGCAGACCTG
AACGCCTTCAGACAGGCGATGGGTCCCTTTGGCGCTGTCAACGCCTTCGT
ACGGGCAATGGGTCCATTTGGCACTGTGCGCACAGACCTGTTATACTTCA
TGAAGGAGAATCCTGGCGCCGCTGTCACGCACACCCTCATGGATACCGCC
ATCGGCTTTCGGCAGGATGAGTTTGTCACATTGCTCAGCCGCTCTCATGG
TGACGTCCCGGATCTGCGCAGCGTGGTGTCCCTGGCGTCTCAGTTTGACT
GGCCCTGGGGGCCGTGGACGTCAGCGGAGTGCGAGATCATGCGTAGTAGC
GCCGAGCGGCTCATCGCATCACCGAGTGAGCGCGCAGAGTGCATGCGGCT
GCTGCATGAGCTGGGCTGCCCGTGCCATGCGCGCGGCCCGACGGCAGTGG
CGACGACAACGCTGCTGCTGCGCACGGCAGAGGGGGCACGTGATGATGAG
GTGACGTGCCGCCCGACGTGCATGCCGTGACCGTGGGCTTGTGCGGCTGC
GCATCAGGTCTTTCTAGCGGCCCGCTGGCAAGGTGAGGGCAGCGGGCTAT
CATCGCCATCAGCATCAGCTGTCAACATCAACATCCGCTGCCCGCGTCCC
CCTCCCGGACGGCATCTATGCACTAG
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protein sequence of jgi.p|Trimin1|349074

>Trimin1|349074|estExt_Genemark1.C_Ctg_350076 ID=Trimin1|349074|estExt_Genemark1.C_Ctg_350076|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=310bp
MLGRGYWLPVAGVSRGVRAAYTRELLQGGGDSSIGGGCAWLCRTSLSAVL
QSDAAFRMALDLSVPAGMDSAAKINDAGLLQLLEESPIARHAVGKEQLSC
GLIRDAVTAALPLDGHTLAGAAERGCEAALKQWHALLTAMGVQDCYTADL
NAFRQAMGPFGAVNAFVRAMGPFGTVRTDLLYFMKENPGAAVTHTLMDTA
IGFRQDEFVTLLSRSHGDVPDLRSVVSLASQFDWPWGPWTSAECEIMRSS
AERLIASPSERAECMRLLHELGCPCHARGPTAVATTTLLLRTAEGARDDE
VTCRPTCMP*
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mRNA from alignment at Contig_35:697436..700625-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3190bp|location=Sequence derived from alignment at Contig_35:697436..700625- (Tribonema minus UTEX_B_3156 )
ATGCTGGGGCGGGGGTATTGGCTGCCCGTTGCAGGCGTGAGCCGCGGCGT GCGTGCGGCGTACACGAGAGAGCTGCTCCAAGGAGGCGGCGACAGCAGCA TAGGCGGCGGGTGTGCGTGGCTGTGCCGCACATCTCTCAGCGCTGTGTTG CAGTCAGATGCCGCGTTCCGCATGGCTTTGGACCTGTCGGTACCTGCTGG AATGGATTCCGCGGCGAAGATCAATGTAAGCCCCAGTAGTGCTTGAATGA AATTCTGGACCAGTGCACCCTCATCCGCTATGAGTCACGATTGCCAGGCA CCGTCTTTATCGACACTTTAAGGCCATTGGACATTTATATGTACCCAGCG CAGAAAGGGGGGGGGCGTGGGTTTTATGGTGCGATCAAAAAGGAGGACGC ATTAAACACCCAGCATGAACAGTGAGAGCTTGCACTTCGTTCTTGTCGTG AGTGCTGCCGGGGCACCTCGGCTCCATATACCATCACCAACGGTTTCAGG GTCACATTTGAAGTTGGCCAATGTTTTAGGCTAGAGCAGACCCCCGCAAG CAACCGCCAGGCTCTGACAAAGCTTAGACAGCTGCTATGCTGCTATTGCT GCTTGTTGGTGCTCGTAATCAGCATTTCTGAGGCTCCAACTTTGCTGCTA GCAGCAGCAAGGGAGCAGCGCGCTAACGCTGCATCTGTGCGGCGAAGCAA CTGCAGCATGCAAACAGGGGGGGGGGGGGGGGGTGAACGTACCTTAGTGC GGGTCAAGAAAGGGTGACCTCTATTTATGTTGCTTTGATAAAAAACAATA ATAAAGCGTCCAGTGGCCTTAATTATCGATCAGACGGTTTTATGGAGACA CTTTTCAGTAGTCAGGCATCCAACGAGGGCTGTGGCATATCAACAAAATA ATGATGTACGCATGCTGGGGAGATTCACCTCATGGGATAGCCATGTAGGC AACCTGCCCAACTTTCTGCAGATCTCACCAGCGTAGATGTGACGGCTACG ACAAAAGTCACATGCTGCAATCTGATGCACTGCATTCTGATGCACTGGAA GTAGTATTTGAGGGTAGACATGCATGCGGTATGGTGCAGTTGCCACTGCC CCTAATTAGCATTCCTGCTGACACTACAATTCAGTACTTGCCCGCAGAAT TGTACACATTGCTCGTGGTCACTCGACTTGCACATGCGCCACAAGCTTGA CTATTGCTCGCCTTTCATTAGGCCGGTATGCCTGGCCCTGAATGGCGTGA AAATGACCCGGACGCAAAAAAGCGACGCAAGGCAAAGTAGTCTTCCTTGC GTCGTGCCAGATTGTGACCTGCACCATTGCAGTTAAAACAGAAAACGCAC GCAAATGACCTACTTCAAGTTCAAGTTGATTATCAGGACTTAGGTCACTT CAACATCCCAACTTCAACTGATGCTCACTCCAACATCAGATAGATCTTGA ATTTCAACACCTTCTGAGCTTTTGAAAGACCAATATCGATATGCTCTACT TCGGCAAGCCGACCACTTTAGTACGAAGTTATGGTGACTTCAACAACATC ATAGAGATACTTCAACTGCCTGATCAGTATTGTTGGCTGTAAACCCATAT AATTGAGTCCTGGCCGCCCAGCCGCAACATTCCCTGCGTTCACCCACTTC ATTGCCACTTGCCCATCCCCTATCAGGACGCCGGTCTGCTGCAGCTGCTT GAGGAGAGCCCAATTGCAAGGCACGCAGTGGGCAAAGAGCAGCTGTCGTG CGGCTTGATTCGAGATGCGGTGACAGCAGCACTGCCGCTGGATGGCCACA CGCTGGCCGGTGCTGCGGAGCGCGGCTGCGAGGCAGCGCTCAAACAGTGG CACGCGCTGCTGTCAGACAGCCCTCAGTGGCACGCACAGTAGGGTCAGGT GCTGCCGGTAATGGCGCTGCGCGCGTTGGACGCCAAGGAACGCCCTGCGG CGCTGGCAGTACTGCGATGGGTGTTCAGGACTGCTACACGGCAGGTCGGC GGTTCCACAAGCAAGGTGCAGTTGCCACCGCTGCTGCTCACAGTGCTGGC CTTCAAGTGTGCGGCATTCGGTGACTTCAATACGTTTCGCTGGCTGTACA CGGATGGTCGCCAGCTGACAAAGCAGGATATACATGCGCAAGTCCCAGTA GCAGACCTGAACGCCTTCAGACAGGCGATGGGTCCCTTTGGCGCTGTCAA CGCCTTCGTACGGGCAATGGGTCCATTTGGCACTGTGCGCACAGACCTGT TATACTTCATGAAGGAGAATCCTGGCGCCGCTGTCACGCACACCCTCATG GATACCGCCATCGGCTTTCGGCAGGATGAGTTTGTCACATTGCTCAGCCG CTCTCATGTCAGCGCTCCACTGTCGGCCTTTACGGACCTCAGTGCCAGAA TTGCTGCCTCCAAAGGCAGCTGCAGCCTGCTGCAGTGGCTCCATGCGCAC CCCGGCTGCAAGTTTATCAATCATCAGGTCCTTGACGAATTCCTGATCTC ACGAATTGCTCCACGGCATTTGTCAGGGACTGCGGCCGTGGCACGAAATG TCTTTGATGTGCTGAATTGGCTGCGCCACATCGGCGCGTTCGCAGCAACG ACGCAGACGGAGCTGACAGACATGGTCTTAAGGACCGCACAGTCTCACAC AGCCTCGCCGCGTCGTTCTTACCTGGTCAAGCTTCGATGGCTTCTGCACG AGATGGGCGCCGGGTGGCCTGATGGCGGTGCAGTGTTCATCATGCACTCC ACGGCTCGTCAGGGTGACGTCCCGGATCTGCGCAGCGTGGTGTCCCTGGC GTCTCAGTTTGACTGGCCCTGGGGGCCGTGGACGTCAGCGGAGTGCGAGA TCATGCGTAGTAGCGCCGAGCGGCTCATCGCATCACCGAGTGAGCGCGCA GAGTGCATGCGGCTGCTGCATGAGCTGGGCTGCCCGTGCCATGCGCGCGG CCCGACGGCAGTGGCGACGACAACGCTGCTGCTGCGCACGGCAGAGGGGG CACGTGATGATGAGGTGACGTGCCGCCCGACGTGCATGCCGTGACCGTGG GCTTGTGCGGCTGCGCATCAGGTCTTTCTAGCGGCCCGCTGGCAAGGTGA GGGCAGCGGGCTATCATCGCCATCAGCATCAGCTGTCAACATCAACATCC GCTGCCCGCGTCCCCCTCCCGGACGGCATCTATGCACTAG
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Coding sequence (CDS) from alignment at Contig_35:697436..700625-

>mRNA_7759 ID=mRNA_7759|Name=jgi.p|Trimin1|349074|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=930bp|location=Sequence derived from alignment at Contig_35:697436..700625- (Tribonema minus UTEX_B_3156 )
ATGCTGGGGCGGGGGTATTGGCTGCCCGTTGCAGGCGTGAGCCGCGGCGT
GCGTGCGGCGTACACGAGAGAGCTGCTCCAAGGAGGCGGCGACAGCAGCA
TAGGCGGCGGGTGTGCGTGGCTGTGCCGCACATCTCTCAGCGCTGTGTTG
CAGTCAGATGCCGCGTTCCGCATGGCTTTGGACCTGTCGGTACCTGCTGG
AATGGATTCCGCGGCGAAGATCAATGACGCCGGTCTGCTGCAGCTGCTTG
AGGAGAGCCCAATTGCAAGGCACGCAGTGGGCAAAGAGCAGCTGTCGTGC
GGCTTGATTCGAGATGCGGTGACAGCAGCACTGCCGCTGGATGGCCACAC
GCTGGCCGGTGCTGCGGAGCGCGGCTGCGAGGCAGCGCTCAAACAGTGGC
ACGCGCTGCTTACTGCGATGGGTGTTCAGGACTGCTACACGGCAGACCTG
AACGCCTTCAGACAGGCGATGGGTCCCTTTGGCGCTGTCAACGCCTTCGT
ACGGGCAATGGGTCCATTTGGCACTGTGCGCACAGACCTGTTATACTTCA
TGAAGGAGAATCCTGGCGCCGCTGTCACGCACACCCTCATGGATACCGCC
ATCGGCTTTCGGCAGGATGAGTTTGTCACATTGCTCAGCCGCTCTCATGG
TGACGTCCCGGATCTGCGCAGCGTGGTGTCCCTGGCGTCTCAGTTTGACT
GGCCCTGGGGGCCGTGGACGTCAGCGGAGTGCGAGATCATGCGTAGTAGC
GCCGAGCGGCTCATCGCATCACCGAGTGAGCGCGCAGAGTGCATGCGGCT
GCTGCATGAGCTGGGCTGCCCGTGCCATGCGCGCGGCCCGACGGCAGTGG
CGACGACAACGCTGCTGCTGCGCACGGCAGAGGGGGCACGTGATGATGAG
GTGACGTGCCGCCCGACGTGCATGCCGTGA
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