mRNA_7752 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349071
Unique Name	mRNA_7752
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349071 vs. uniprot
Match: A0A836CDQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ9_9STRA)

HSP 1 Score: 616 bits (1589), Expect = 1.280e-222
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 2

Query:   59 MYCTSCLPQRGGDWVGFMDIDVLGDTDSAKRNRIREARYPTVGNVLAASDLWPDGAAQTEVLRQAAADSEFATAGIAQPFGDGVITMLAGKFQCPSDPAEVHTTLTAMRHSTVTAANVERAQHGGNSSSSSRICIDGDFPVTMEGVADRNKTLQCATNTTVMVVTQLLAPVGQALHSIATLSNRMPTTVKGSYTECPRDQHRALFREAHVKYLRALCDTGVDIFVGISPRNKADFAAAHPGGCAYILAEYGGSTLEVFVPEEGAAHEAQMFITEHVAFEQQLSWQRGVGTVQRVAPVDAKRLVVFAAMQ 985
            MYCTSCLPQRGGDWVGFMDIDVLGDTDSAKRNRIREARYPTVGNVLAASDLWPDGAAQTEVLRQAAADSEFATAGIAQPFGDGVITMLAGKFQCPSDPAEVHTTLTAMRHSTVTAANVERAQHGGNSSSSSRICIDGDFPVTMEGVADRNKTLQCATNTTVMVVTQLLAPVGQALHSIATLSNRMPTTVKGSYTECPRDQHRALFREAHVKYLRALCDTGVDIFVGISPRNKADFAAAHPGGCAYILAEYGGSTLEVFVPEEGAAHEAQMFITEHVAFEQQLSWQRGVGTVQRVAPVDAKRLVVFAAMQ
Sbjct:    1 MYCTSCLPQRGGDWVGFMDIDVLGDTDSAKRNRIREARYPTVGNVLAASDLWPDGAAQTEVLRQAAADSEFATAGIAQPFGDGVITMLAGKFQCPSDPAEVHTTLTAMRHSTVTAANVERAQHGGNSSSSSRICIDGDFPVTMEGVADRNKTLQCATNTTVMVVTQLLAPVGQALHSIATLSNRMPTTVKGSYTECPRDQHRALFREAHVKYLRALCDTGVDIFVGISPRNKADFAAAHPGGCAYILAEYGGSTLEVFVPEEGAAHEAQMFITEHVAFEQQLSWQRGVGTVQRVAPVDAKRLVVFAAMQ 309

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349071 vs. uniprot

BLAST of jgi.p|Trimin1|349071 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CDQ9_9STRA	1.280e-222	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_35	contig	Contig_35:620950..623483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349071\|estExt_Genemark1.C_Ctg_350069
Hectar predicted targeting category	other localisation
TranscriptId	349393
Track	FilteredModels1
ProteinId	349071

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349071	gene_7752	Tribonema minus UTEX_B_3156	gene	Contig_35 620950..623483 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349071	Trimin1\|349071\|estExt_Genemark1.C_Ctg_350069	Tribonema minus UTEX_B_3156	polypeptide	Contig_35 620950..623425 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_7752_5	exon_7752_5	Tribonema minus UTEX_B_3156	exon	Contig_35 620950..621088 -
exon_7752_4	exon_7752_4	Tribonema minus UTEX_B_3156	exon	Contig_35 622056..622417 -
exon_7752_3	exon_7752_3	Tribonema minus UTEX_B_3156	exon	Contig_35 622555..622620 -
exon_7752_2	exon_7752_2	Tribonema minus UTEX_B_3156	exon	Contig_35 622692..622909 -
exon_7752_1	exon_7752_1	Tribonema minus UTEX_B_3156	exon	Contig_35 623281..623483 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_7752	CDS_7752	Tribonema minus UTEX_B_3156	CDS	Contig_35 623281..623425 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_7752	UTR5_7752	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_35 623426..623483 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_35:620950..623483-
coding sequence from alignment at Contig_35:620950..623483-

spliced messenger RNA

>mRNA_7752 ID=mRNA_7752|Name=jgi.p|Trimin1|349071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=988bp|location=Sequence derived from alignment at Contig_35:620950..623483- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGCT
TTGTTGCTATGTACTGCACATCATGTCTACCGCAGAGGGGCGGGGACTGG
GTTGGATTTATGGATATTGATGTGCTGGGAGACACCGACTCTGCCAAACG
GAACAGGATCCGCGAAGCCCGCTACCCGACTGTGGGCAATGTTCTGGCGG
CGAGCGACTTGTGGCCAGACGGCGCTGCGCAGACTGAGGTGCTCCGGCAG
GCAGCTGCAGACTCTGAGTTCGCCACCGCCGGCATCGCACAGCCCTTCGG
CGACGGCGTGATCACCATGCTGGCGGGAAAATTTCAATGCCCCTCCGATC
CGGCAGAGGTGCACACAACGCTGACCGCCATGCGGCACTCCACGGTGACC
GCTGCCAACGTGGAGCGCGCGCAGCACGGCGGCAACAGCAGCAGCAGCAG
CCGCATCTGCATTGACGGCGACTTCCCCGTCACAATGGAGGGTGTCGCGG
ACCGCAACAAGACGCTGCAGTGCGCCACCAACACGACTGTAATGGTGGTG
ACTCAGCTGCTGGCACCCGTCGGCCAGGCGCTCCACAGCATCGCGACCCT
CAGCAATCGCATGCCGACCACTGTGAAGGGCAGCTACACGGAGTGCCCGC
GAGACCAGCACCGCGCCCTCTTTCGCGAGGCCCACGTCAAGTACCTCCGC
GCCCTCTGCGACACAGGGGTCGACATCTTCGTCGGCATCTCGCCGAGAAA
CAAGGCGGATTTCGCGGCGGCGCATCCAGGGGGGTGCGCGTACATCCTGG
CCGAGTACGGGGGCAGCACGCTGGAGGTGTTCGTGCCGGAGGAAGGCGCG
GCCCATGAGGCTCAGATGTTCATTACGGAGCACGTAGCATTCGAGCAGCA
GCTCAGTTGGCAGCGCGGCGTCGGCACTGTCCAGAGGGTGGCACCCGTGG
ACGCCAAGCGCCTTGTCGTCTTCGCTGCTATGCAGTAA

protein sequence of jgi.p|Trimin1|349071

>Trimin1|349071|estExt_Genemark1.C_Ctg_350069 ID=Trimin1|349071|estExt_Genemark1.C_Ctg_350069|Name=jgi.p|Trimin1|349071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=310bp
MYCTSCLPQRGGDWVGFMDIDVLGDTDSAKRNRIREARYPTVGNVLAASD
LWPDGAAQTEVLRQAAADSEFATAGIAQPFGDGVITMLAGKFQCPSDPAE
VHTTLTAMRHSTVTAANVERAQHGGNSSSSSRICIDGDFPVTMEGVADRN
KTLQCATNTTVMVVTQLLAPVGQALHSIATLSNRMPTTVKGSYTECPRDQ
HRALFREAHVKYLRALCDTGVDIFVGISPRNKADFAAAHPGGCAYILAEY
GGSTLEVFVPEEGAAHEAQMFITEHVAFEQQLSWQRGVGTVQRVAPVDAK
RLVVFAAMQ*

mRNA from alignment at Contig_35:620950..623483-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7752 ID=mRNA_7752|Name=jgi.p|Trimin1|349071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2534bp|location=Sequence derived from alignment at Contig_35:620950..623483- (Tribonema minus UTEX_B_3156 )
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGCT
TTGTTGCTATGTACTGCACATCATGTCTACCGCAGAGGGGCGGGGACTGG
GTTGGATTTATGGATATTGATGTGCTGGGAGACACCGACTCTGCCAAACG
GAACAGGATCCGCGAAGCCCGCTACCCGACTGTGGGCAATGTTCTGGCGG
CGAGTGAGCGCTCCTTCCGAGACGAAGACACAGCGAAGTTGAGGTAGCAA
CCAAATGTCTGTCCGCTTTGCATGGATGCTGCGTTGAGCAGCCCATGCGA
AGATCTGCCGTTTACCTGATGTTTGACTGAATCTCTTCGCCAGCATCTGC
GACGACTACAAGACGTGATCATGGAGTCGTCCGGCCTCGAATAATTTACC
TCAAACGAGTCATGAAGCCACATTTAGACACCGCAAACTTTTGTGCAGCA
TCTTTGAGCCTGCATGACATTGTCTGCATTCTCCATGTTTACATGCTGAC
ACCTGTCATGTTGGAAATGCTGTGATGGCTGCAGGCTGCAAGACACGTCG
GCAGCCTGCCGCATGGCGTGCAAGGCGACTTGTGGCCAGACGGCGCTGCG
CAGACTGAGGTGCTCCGGCAGGCAGCTGCAGACTCTGAGTTCGCCACCGC
CGGCATCGCACAGCCCTTCGGCGACGGCGTGATCACCATGCTGGCGGGAA
AATTTCAATGCCCCTCCGATCCGGCAGAGGTGCACACAACGCTGACCGCC
ATGCGGCACTCCACGGTGACCGCTGCCAACGTGGAGCGCGCGGTCAGCGC
CGTCGACGCGTCCAACATTGAACCCACATTGCCCACAGCGGCCCGCTCTT
CAATGGCTTGCAGCAGCACGGCGGCAACAGCAGCAGCAGCAGCCGCATCT
GCATTGACGGCGACTTCCCCGTCACAATGGTGCTGCAGCACCGTTGTGCT
GGCACCGTTGTGTTGTGCTGAGGAGCGGGCTGCTGTGGGCGTTGTGGGTT
TCAATGTTGTCGGCGTTGATGGCGCTGACTGCGCGCTCCACGTTGGCAAC
GGGACCGCAACAAGAGGAGGGTGTCGCGGACCGCAACAAGACGCTGCAGT
GCGCCACCAACACGACTGTAATGGTGGTGACTCAGCTGCTGGCACCCGTC
GGCCAGGCGCTCCACAGCATCGCGACCCTCAGCAATCGCATGCCGACCAC
TGTGAAGGGCAGCTACACGGAGTGCCCGCGAGACCAGCACCGCGCCCTCT
TTCGCGAGGCCCACGTCAAGTACCTCCGCGCCCTCTGCGACACAGGGGTC
GACATCTTCGTCGGCATCTCGCCGAGAAACAAGGCGGATTTCGCGGCGGC
GCATCCAGGGGGGTGCGCGTACATCCTGGCCGAGTACGGGGGCAGCACGC
TGGAGGTGTTCGTGCCGGAGGAAGGCGCGTTGAGTTGAACTGTTGGAGCT
GGTGCCTGGTGCGCGCGTCTTACAACAATGACAATGACAATGGCACCTCC
CTAAATTAAGACGTCATGGGAATCCTGGATTTCGTCGCGCTTGAGAGCCG
CTGCCGCTCAGCCGAGGAGATGACAGAATTGGCGCTTTCAACCCTATGCT
GCAAACGCTGACGACAGGAGCGGAGACTGGTAAGGGCTTCTCAGCTCAGA
GTGGTCATACAGCAGTTCGTCGTGCGTGGCGCGATGATGGTTGCTGCGTT
GCACTAAGTAACCCGGCTAGCCGATGACTTGCATACTGGCGGCCGCGACC
CCGCAGAAGCTGCATCGACCGGATTTTCTCAAGGATCGTTAGCAAGCAAA
CGTGAACTCCTGCTGGTACTTGCGCCTGCAGCAACACCACAGCGGTTGTT
TTGAACTCTGCAGGGCGGTGACACCGTTCAGACGGGGTGCTAGAGTCCCA
TGGACCGTCAGCTGTGACGGATGTGCAGTTGACACTGCGAGAGCTTTGTC
ACCAGAGAGCAGCGAAAATGGGCAGCTGCGCCAACGCTGAGTGCGCTGTG
CCGCACATCAATGAATATGCTAGCTGCAGCCAGACACTGCACATGACACT
GATACTGCGTAAGGCCGCGCATGGAGGCCGGTGGTGCGCCAGTTGGTTTC
AGCAACGCCATACCCTACTAATTGACTGCCGGACGGGTGCATGCGAGCTG
AAGGATTAGTGCACATTTTCTGGCAGCATACATACCTTGATGGGCGGCGC
CTTGAGGTATGTAAAGGAGGACCCTGCACAAGCGCTCAGCCAGTCTCATC
ATTTCCGGGCACTGGCGTGCAGGCGGCCTCGCAGCCCGTGAGCCTTGCTA
CTGGCGCAGGCAGCTTAACACTCCTGCAGTAATTTGATACGCAGCACCTT
GTAGGCATTGTTGCAGTGGAGAAATCGTCCTGACGTCGTGTACAGGGCCC
ATGAGGCTCAGATGTTCATTACGGAGCACGTAGCATTCGAGCAGCAGCTC
AGTTGGCAGCGCGGCGTCGGCACTGTCCAGAGGGTGGCACCCGTGGACGC
CAAGCGCCTTGTCGTCTTCGCTGCTATGCAGTAA

Coding sequence (CDS) from alignment at Contig_35:620950..623483-

>mRNA_7752 ID=mRNA_7752|Name=jgi.p|Trimin1|349071|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=930bp|location=Sequence derived from alignment at Contig_35:620950..623483- (Tribonema minus UTEX_B_3156 )
ATGTACTGCACATCATGTCTACCGCAGAGGGGCGGGGACTGGGTTGGATT
TATGGATATTGATGTGCTGGGAGACACCGACTCTGCCAAACGGAACAGGA
TCCGCGAAGCCCGCTACCCGACTGTGGGCAATGTTCTGGCGGCGAGCGAC
TTGTGGCCAGACGGCGCTGCGCAGACTGAGGTGCTCCGGCAGGCAGCTGC
AGACTCTGAGTTCGCCACCGCCGGCATCGCACAGCCCTTCGGCGACGGCG
TGATCACCATGCTGGCGGGAAAATTTCAATGCCCCTCCGATCCGGCAGAG
GTGCACACAACGCTGACCGCCATGCGGCACTCCACGGTGACCGCTGCCAA
CGTGGAGCGCGCGCAGCACGGCGGCAACAGCAGCAGCAGCAGCCGCATCT
GCATTGACGGCGACTTCCCCGTCACAATGGAGGGTGTCGCGGACCGCAAC
AAGACGCTGCAGTGCGCCACCAACACGACTGTAATGGTGGTGACTCAGCT
GCTGGCACCCGTCGGCCAGGCGCTCCACAGCATCGCGACCCTCAGCAATC
GCATGCCGACCACTGTGAAGGGCAGCTACACGGAGTGCCCGCGAGACCAG
CACCGCGCCCTCTTTCGCGAGGCCCACGTCAAGTACCTCCGCGCCCTCTG
CGACACAGGGGTCGACATCTTCGTCGGCATCTCGCCGAGAAACAAGGCGG
ATTTCGCGGCGGCGCATCCAGGGGGGTGCGCGTACATCCTGGCCGAGTAC
GGGGGCAGCACGCTGGAGGTGTTCGTGCCGGAGGAAGGCGCGGCCCATGA
GGCTCAGATGTTCATTACGGAGCACGTAGCATTCGAGCAGCAGCTCAGTT
GGCAGCGCGGCGTCGGCACTGTCCAGAGGGTGGCACCCGTGGACGCCAAG
CGCCTTGTCGTCTTCGCTGCTATGCAGTAA