mRNA_761 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156960
Unique NamemRNA_761
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A836CI54_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI54_9STRA)

HSP 1 Score: 309 bits (791), Expect = 2.340e-106
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query:    1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 471
            MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV
Sbjct:    1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 157          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A835Z4I2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I2_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.510e-50
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 1
Query:    1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDEDTTLEIV 471
            M  ++VLIVDDV  FRKLL+KQLERRG+ +IDEA DG+ AL++M+   Y  V+MDVMMPRMNGDVC R +REWE  +     P++LMSADVLS DNDV+ SG  Q FFTKP++IVRLGN+LRD+A  SS  G W +  +  +      D +  +++V
Sbjct:  424 MRRLKVLIVDDVPTFRKLLKKQLERRGIVRIDEAGDGVDALEMMQHTQYSAVLMDVMMPRMNGDVCARKMREWEATHGGSSVPILLMSADVLSEDNDVVESGTVQYFFTKPIDIVRLGNSLRDIAAASSKLGSWTQTASNSTGVHTPVDMEEVIDVV 580          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A835ZBI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI1_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.590e-48
Identity = 83/129 (64.34%), Postives = 105/129 (81.40%), Query Frame = 1
Query:    1 MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSS 387
            M+++ VLIVDDV  FRKLL+KQLERRGV +IDEA+DG+ AL++MK   Y VV+MDVMMPRMNGDVC R +REWE+    P  P++LMSADVLS +NDV++SG  Q FFTKP++IVRLGN LR++A+  S
Sbjct:  529 MANLSVLIVDDVSTFRKLLKKQLERRGVTRIDEAEDGVNALEMMKHTQYSVVLMDVMMPRMNGDVCARELREWEVRRGTPNVPILLMSADVLSDENDVVTSGIVQHFFTKPIDIVRLGNTLRNIAVTES 657          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A1E8CGR6_9GAMM (Histidine kinase n=1 Tax=Pseudohongiella acticola TaxID=1524254 RepID=A0A1E8CGR6_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 6.160e-17
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    4 SHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDED 453
              +RVL VDDV    +LL+  L + G  Q+D A++G QA+ + K  TYDV++MDV MP M+G    RAIR++E  + RP TPVI ++A V+  D           F TKPL    L   +  +   S   G  +++ A   P  + T+ +
Sbjct:  642 GRLRVLAVDDVPENLELLQLTLRKNG-HQVDTAENGEQAVALFKQATYDVILMDVQMPVMDGLQATRAIRQYEQQHQRPATPVIALTASVMDRDRQSARDAGMNGFATKPLEWQALNREINHLVTES---GINVELGATPVPEPENTERN 787          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A6C2UB29_9BACT (Sensory/regulatory protein RpfC n=1 Tax=Pontiella desulfatans TaxID=2750659 RepID=A0A6C2UB29_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 3.480e-16
Identity = 44/119 (36.97%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   10 IRVLIVDDVMIFRKLLRKQLERRGVEQIDEA-QDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNAL 363
            +RVL+V+D ++ + +  + L + G   I EA +DG  A++++  + +D+V+MDV MP+M+G    +AIRE E+A   P+ P+I M+A  LS D +    G    + TKP+N+  L NA+
Sbjct:  399 VRVLVVEDNLVNQTVAVRTLHKMGC--IAEASKDGADAIELLANRHFDLVLMDVQMPKMDGLETTKAIREKEVAEALPRLPIIAMTAHALSGDRERCLEGGMDGYITKPINVAELSNAV 515          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: H0J113_9GAMM (Histidine kinase n=1 Tax=Halomonas sp. GFAJ-1 TaxID=1118153 RepID=H0J113_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 3.980e-16
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   10 IRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLN 339
            + +L+ DDV    +LL+  L+RRG  Q+D A DG QAL+    + YD+V+MDV MP M+G    +AIR WE     P+ PVI ++A ++  D +   +     F TKP++
Sbjct:  778 LHILVADDVPQNVQLLQGMLQRRG-HQVDTATDGKQALERSTAERYDIVLMDVHMPNMDGHTATKAIRSWEQEQGHPRLPVIALTASIMEQDREQAHAAGMDGFATKPID 886          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A354V931_9PROT (Histidine kinase n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V931_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 7.210e-16
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   10 IRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRL 351
            + VL+VDDV + R+L    LE+ G   +D A DG+QAL+++K   YD+V+MDV MPRMNG     AIR   +   +   P++ M+A+ +  D + L +     +  KP  +V+L
Sbjct:  754 LHVLVVDDVAVNRQLAAAILEKAG-HTVDGAADGLQALEMVKTADYDLVLMDVQMPRMNGIAATAAIRA--LTGTKANVPIVAMTANAMDGDRETLLAAGMNDYIAKPFTLVQL 864          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A7W4W4A7_9GAMM (CheY-like chemotaxis protein n=2 Tax=Litorivivens lipolytica TaxID=1524264 RepID=A0A7W4W4A7_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 7.790e-16
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   13 RVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNG-DVCVRAIREWEIANLRPKTPVILMSADVLSP-DNDVLSSGAAQQFFTKPLNIVRLGNAL 363
            R+LI +D  + + +L +QL+R G    D A+DG +AL + K + YD+VI D+ MP M+G D+C +AIRE E  + RP+T V++++A+      ND+ +SG    F TKPL +  +  AL
Sbjct:    4 RILIAEDDEVNQNILMRQLKRFGYS-ADLAEDGSKALALWKEQAYDLVITDLHMPNMDGYDLC-KAIRELEKTDNRPRTAVVMLTANAFGEAQNDIQASGI-DDFLTKPLRLPEIKQAL 119          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A3M2ISZ7_9BACT (Response regulator (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2ISZ7_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 1.040e-15
Identity = 42/123 (34.15%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 SHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNALRDV 372
               RVL+ +D  + +KL+++ LE+RG+ Q+D    G++A++ MK K YD+V+MDV MP M+G    R IRE E    +  TP+I ++A  +  D +   +     + +KP+   +L N L ++
Sbjct:   85 GEFRVLVAEDNSVNQKLMQRLLEKRGL-QVDMVATGVEAVEAMKQKEYDLVLMDVQMPEMDGLEATRRIREMEAVTGK-HTPIIALTAYAMKGDREKCLAAGMDGYLSKPIKPAQLENVLENL 205          
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Match: A0A2E5X139_9PROT (Histidine kinase n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E5X139_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 1.290e-15
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    4 SHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYDVVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLSSGAAQQFFTKPLNIVRLGNAL 363
            S ++VLIVDD +  R L++  L++   E I EA DG++ALD MK K +DVV MD+ MPRM+G       R+WE  N    T +I ++A  L  + D         + TKPL    L N+L
Sbjct:  548 SELKVLIVDDAINNRSLVKAYLKKFPFE-ITEAVDGVEALDKMKEKAFDVVFMDMQMPRMDGYTATEEFRKWESQNRDSCTNIIALTACALKEEKDKSLVSGCDDYLTKPLKKETLINSL 666          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156960 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI54_9STRA2.340e-106100.00CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A835Z4I2_9STRA1.510e-5054.78Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZBI1_9STRA1.590e-4864.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E8CGR6_9GAMM6.160e-1736.00Histidine kinase n=1 Tax=Pseudohongiella acticola ... [more]
A0A6C2UB29_9BACT3.480e-1636.97Sensory/regulatory protein RpfC n=1 Tax=Pontiella ... [more]
H0J113_9GAMM3.980e-1639.09Histidine kinase n=1 Tax=Halomonas sp. GFAJ-1 TaxI... [more]
A0A354V931_9PROT7.210e-1637.72Histidine kinase n=1 Tax=Acetobacteraceae bacteriu... [more]
A0A7W4W4A7_9GAMM7.790e-1640.34CheY-like chemotaxis protein n=2 Tax=Litorivivens ... [more]
A0A3M2ISZ7_9BACT1.040e-1534.15Response regulator (Fragment) n=1 Tax=Calditrichae... [more]
A0A2E5X139_9PROT1.290e-1540.00Histidine kinase n=1 Tax=Halobacteriovoraceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1362999..1363472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156960|e_gw1.2.283.1
DescriptionHistidine kinase
COG categoryT
Max annot lvl135619|Oceanospirillales
EggNOG OGsCOG0642@1|root,COG3300@1|root,COG2205@2|Bacteria,COG3300@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1XJ4N@135619|Oceanospirillales
Evalue6.53e-17
Seed ortholog1118153.MOY_06595
Hectar predicted targeting categoryother localisation
TranscriptId157282
TrackFilteredModels1
ProteinId156960
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156960gene_761Tribonema minus UTEX_B_3156 geneContig_2 1362999..1363472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_761_1exon_761_1Tribonema minus UTEX_B_3156 exonContig_2 1362999..1363472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_761CDS_761Tribonema minus UTEX_B_3156 CDSContig_2 1362999..1363472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156960Trimin1|156960|e_gw1.2.283.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1362999..1363472 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_761 ID=mRNA_761|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_2:1362999..1363472- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACATCAGGGTACTCATTGTTGATGATGTCATGATCTTCAGAAA
GTTGCTGAGGAAGCAATTGGAGCGTAGAGGCGTGGAGCAAATAGACGAGG
CACAAGATGGCATTCAGGCACTGGACATTATGAAACTCAAAACATACGAT
GTCGTAATCATGGACGTCATGATGCCACGAATGAATGGTGACGTGTGTGT
CAGGGCCATCCGCGAGTGGGAAATAGCAAACCTGCGACCAAAAACTCCAG
TCATACTGATGTCTGCCGACGTGCTTTCACCTGACAATGACGTTTTGAGC
TCGGGGGCCGCACAGCAATTTTTCACCAAGCCTCTTAACATAGTACGATT
GGGCAATGCCCTACGTGACGTGGCCATGGGCAGCTCACACAAAGGTGACT
GGATCAAAATGATTGCAAAAAAATCTCCAACAGCTAAGAAAACTGACGAG
GATACGACACTGGAAATTGTGTGA
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protein sequence of jgi.p|Trimin1|156960

>Trimin1|156960|e_gw1.2.283.1 ID=Trimin1|156960|e_gw1.2.283.1|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MSHIRVLIVDDVMIFRKLLRKQLERRGVEQIDEAQDGIQALDIMKLKTYD
VVIMDVMMPRMNGDVCVRAIREWEIANLRPKTPVILMSADVLSPDNDVLS
SGAAQQFFTKPLNIVRLGNALRDVAMGSSHKGDWIKMIAKKSPTAKKTDE
DTTLEIV*
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mRNA from alignment at Contig_2:1362999..1363472-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_761 ID=mRNA_761|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_2:1362999..1363472- (Tribonema minus UTEX_B_3156 )
ATGTCGCACATCAGGGTACTCATTGTTGATGATGTCATGATCTTCAGAAA GTTGCTGAGGAAGCAATTGGAGCGTAGAGGCGTGGAGCAAATAGACGAGG CACAAGATGGCATTCAGGCACTGGACATTATGAAACTCAAAACATACGAT GTCGTAATCATGGACGTCATGATGCCACGAATGAATGGTGACGTGTGTGT CAGGGCCATCCGCGAGTGGGAAATAGCAAACCTGCGACCAAAAACTCCAG TCATACTGATGTCTGCCGACGTGCTTTCACCTGACAATGACGTTTTGAGC TCGGGGGCCGCACAGCAATTTTTCACCAAGCCTCTTAACATAGTACGATT GGGCAATGCCCTACGTGACGTGGCCATGGGCAGCTCACACAAAGGTGACT GGATCAAAATGATTGCAAAAAAATCTCCAACAGCTAAGAAAACTGACGAG GATACGACACTGGAAATTGTGTGA
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Coding sequence (CDS) from alignment at Contig_2:1362999..1363472-

>mRNA_761 ID=mRNA_761|Name=jgi.p|Trimin1|156960|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_2:1362999..1363472- (Tribonema minus UTEX_B_3156 )
ATGTCGCACATCAGGGTACTCATTGTTGATGATGTCATGATCTTCAGAAA
GTTGCTGAGGAAGCAATTGGAGCGTAGAGGCGTGGAGCAAATAGACGAGG
CACAAGATGGCATTCAGGCACTGGACATTATGAAACTCAAAACATACGAT
GTCGTAATCATGGACGTCATGATGCCACGAATGAATGGTGACGTGTGTGT
CAGGGCCATCCGCGAGTGGGAAATAGCAAACCTGCGACCAAAAACTCCAG
TCATACTGATGTCTGCCGACGTGCTTTCACCTGACAATGACGTTTTGAGC
TCGGGGGCCGCACAGCAATTTTTCACCAAGCCTCTTAACATAGTACGATT
GGGCAATGCCCTACGTGACGTGGCCATGGGCAGCTCACACAAAGGTGACT
GGATCAAAATGATTGCAAAAAAATCTCCAACAGCTAAGAAAACTGACGAG
GATACGACACTGGAAATTGTGTGA
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