mRNA_7454 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|57321
Unique NamemRNA_7454
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A835YYY9_9STRA (Proteasome activator pa28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY9_9STRA)

HSP 1 Score: 453 bits (1165), Expect = 1.280e-159
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 3 
Query:   75 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGRHGAPGFMF 809
            MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGRHGAPGFMF
Sbjct:    1 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGRHGAPGFMF 245
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: H6WB99_VAULI (BED-type domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB99_VAULI)

HSP 1 Score: 217 bits (553), Expect = 9.200e-66
Identity = 120/242 (49.59%), Postives = 163/242 (67.36%), Query Frame = 3 
Query:   75 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSV--PATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGRHGA 794
            ME LK   K EG+  RE+VP+ +  L++ L  +F+YTDL  IE +F   V A  S   P  N+KL  L+  V+S +  +IN L +L  WI+ HVP IEDGNNFGVGVQ EV K I+ES+ KL+AAF+ LPEYHEKR+  WEKL  K ++  KKST          G+E+K+TVT+S D S+ST +Q+PD LR +V +D++CYV LH  +QL+RD++ F A++VE N+ K+ APKG+A R  A
Sbjct:   79 METLKSSIKDEGKVIREIVPSLIKELDKILQYDFSYTDLLSIEKTFADDVLANASQNQPQVNEKLCSLISLVRSKMVLAINTLFSLKMWIRAHVPAIEDGNNFGVGVQYEVTKNISESIEKLQAAFNTLPEYHEKRSAVWEKLIGKSETVTKKST----------GNEDKSTVTQSTDESNSTGKQLPDSLRTIVALDLKCYVNLHSHLQLSRDSLFFSANLVELNIGKLVAPKGEADRRAA 310
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: D7G5E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E6_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.450e-42
Identity = 94/233 (40.34%), Postives = 137/233 (58.80%), Query Frame = 3 
Query:   75 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKG 773
            M +L   S  EGE A   +P  V  +   L + FAYT L+ IES F   + ++G     N  +  LL  V++++  +++ILLAL RWI+V VP IEDGNNFGV VQ +VAK I E  T + ++  ++P Y E RA AW+K+  K+   +K S+S S  TGGK+GD          +  +S S   PD    L+ +DV+ +V LH ++  ARD+++  ADM+EKN+ K+  PKG
Sbjct:    1 MSSLTAISVREGEVALANLPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGALLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGKDGDSXXXXXXXXTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKG 233
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A485KK80_9STRA (Aste57867_8360 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK80_9STRA)

HSP 1 Score: 130 bits (326), Expect = 8.550e-33
Identity = 86/219 (39.27%), Postives = 130/219 (59.36%), Query Frame = 3 
Query:  129 VPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGR 785
            +P  +AH+ E L+S F     SQ+ ++F   V A     ATN  L +L+  V  ++  +I  L  L RWIQ+ +P + DGNNFGV VQ+ V   I+ S T L+ ++D + +Y+ +RA A+EK AAK+ +  K + S +   GGK+G+ +K +  ES+D SSS SR IPD +  +V +DV+ Y  L ++++   D   F  D VEKN +KIK P+G   R
Sbjct:   19 IPKRMAHITELLSSEFQAQTPSQLTTAFAPGVTAQA---ATNPHLCRLVTLVLDEIHVAIQELQRLERWIQLLIPRVADGNNFGVEVQKTVQLQISASRTALQKSWDGMTDYYWQRATAYEKFAAKKSTDTKVTNSTTHEEGGKDGNVSKKSRIESSDESSSESRVIPDLIAYVVAVDVKWYFNLQRTLESIGDHYAFTLDAVEKNSSKIKLPRGHGER 234
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A7S2V475_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V475_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.930e-28
Identity = 86/232 (37.07%), Postives = 124/232 (53.45%), Query Frame = 3 
Query:   96 SKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQ--IPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGR 785
            +K+E  A  + +P  VA ++  LA+ F  T L+++E SF  A+ +  S PA+N  +  ++ +V+S++A S+  L  L RWI +  P  EDGNNFGV VQQ+V K I   + KLE      PEY ++RA   EK+A K   T   S SK       +G E K   TE+ D  S  +R   IPD    L+ +D++ Y  +   I  ARD +L    ++ KN  KI  PKG   R
Sbjct:    7 AKNEAAALMQQMPQKVADMSNILATKFVATSLTEVEQSFKEAMGST-SEPASNAVMVDIVSSVRSEVAFSLKCLQILSRWIWLMTPEAEDGNNFGVHVQQDVLKTIGTWIEKLEKELKLAPEYFKERAAVAEKMAPKISRTKTVSKSKKN-----DGSETKEESTEAEDEKSEEARSPAIPDQAAHLLAIDLQYYTLMEMGISSARDALLIVEHIISKNEKKITEPKGSEKR 232
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A4D9DB27_9STRA (PA28_beta domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB27_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.660e-26
Identity = 76/221 (34.39%), Postives = 118/221 (53.39%), Query Frame = 3 
Query:  120 REVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAG 782
            R V+P  +A +   L +      +S++ +   AAVAA       N +++  L   +  L  ++  L  +  W+++ VP + DG NFGV V  EV K I   V  L    D+LP Y  +RA A EKL A+  +  K+S SKS+ TGGK+GDE K + +++ + S   S  +PD L  LV +D + +    + ++L     L C D++EKN T + AP+GD G
Sbjct:   18 RSVMPARIAEVEAVLQAVPFGKSVSEVMTHSRAAVAA-------NAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKVEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSIKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKG 231
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: W7U0E4_9STRA (Proteasome activator subunit 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0E4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.520e-25
Identity = 75/221 (33.94%), Postives = 118/221 (53.39%), Query Frame = 3 
Query:  120 REVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAG 782
            R V+P  +A +   L +      +S++ +   AAVAA       N +++  L   +  L  ++  L  +  W+++ VP + DG NFGV V  EV K I   +  L    D+LP Y  +RA A EKL A+  +  K+S SKS+ TGGK+GDE K + +++ + S   S  +PD L  LV +D + +    + ++L     L C D++EKN T + AP+GD G
Sbjct:   99 RSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAA-------NAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKG 312
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A067CUD4_SAPPC (PA28_beta domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUD4_SAPPC)

HSP 1 Score: 110 bits (274), Expect = 3.560e-25
Identity = 75/219 (34.25%), Postives = 122/219 (55.71%), Query Frame = 3 
Query:  129 VPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGR 785
            +P  +  + E LA  F  +  SQ  ++F   V      P +N +L  L+  V  ++ T+I  + +L RWIQ+ VP + DGNNFGV VQ+ V   I+ S T L+ A+D + +Y+ +RA A+EK AAK  S    + S +   GGK+GD  K +  +++ T++S++  + D +  +  +DV+ Y  L ++++   D   +  D VEKN  KIK P+G   R
Sbjct:   19 IPVHMDRIAEVLAREFPASSPSQAYAAFAPLVTL--DAP-SNARLVHLIQIVLDEIHTAIQKMQSLERWIQLLVPKVADGNNFGVEVQKSVQLQISASRTALQKAWDGMTDYYWQRATAYEKFAAKHASEKTNTISTTAEVGGKDGDVTKKSTVDADKTTASSATPLADLVSYVAAVDVKWYFNLQRTLESVGDHYAYTLDAVEKNAAKIKLPRGHGER 234
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A5D6XIL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIL9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.060e-24
Identity = 77/221 (34.84%), Postives = 116/221 (52.49%), Query Frame = 3 
Query:  132 PTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKL---AAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGR 785
            P  V H+   +  +FA    S + ++  AA AA+      N  LA L   V  ++   +  L  L RW+Q+ VP + DGNNFGV VQ+   + + ES    +  +D L EYH +RA A EKL    AKE +T+  +T+    TGGK+ DE KT    S   +++T+  + D    +V +DV+ Y  L ++++  RD      D+VEKN  KI  P+G + R
Sbjct:   20 PRRVEHVQALVTQHFAQRQPSAVRATLAAAAAASSGQVRGNASLAALAAVVADEIELVLAALAQLSRWLQLLVPKVADGNNFGVEVQKLALEHLKESAAGWQKHWDALAEYHSQRAAAAEKLNDKVAKEKATSATTTA---TTGGKDADETKTVTMTSEKETATTAAPVEDWAAFVVAVDVKWYFNLARTLEAVRDQYAVTFDIVEKNRDKILLPRGSSDR 237
[Close]
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Match: A0A662Y6D6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6D6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.060e-24
Identity = 84/240 (35.00%), Postives = 123/240 (51.25%), Query Frame = 3 
Query:   75 MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAVAAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNNFGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAKKSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQI-PDGLRALVTMDVRCYVQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGRHG 791
            M+A K    + G+A    +P  VA +   L  + A    S++ ++F   V A  +    N ++  LL      +A  ++ L  L  WIQ+ VP +EDGNNFGV VQ+     + E++ K + A+D L +Y   RA A EKL AK  S +         TGGK+GDE K+ VT   D   ST  Q   D L A+V +DV+ Y  L ++++  RD     AD++ KN  KI  P+G+  R G
Sbjct:    1 MDAYKTSVAAAGDALLLELPQRVAQVQTLLQQHAAERSPSRVRAAFAQQVLATPTAVGANGQVQGLLATTSDQVALVMDALQLLQLWIQLQVPKVEDGNNFGVEVQKYAFTQLKEALEKWQKAWDALADYSSSRATAAEKLNAKLSSESXXXXXXXXXTGGKDGDEQKS-VTAKVDKQGSTGAQAGEDALAAVVELDVKWYFNLVRALEGVRDQYAVTADVIAKNKDKISLPRGNNDRAG 239
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|57321 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYY9_9STRA1.280e-159100.00Proteasome activator pa28 n=1 Tax=Tribonema minus ... [more]
H6WB99_VAULI9.200e-6649.59BED-type domain-containing protein n=1 Tax=Vaucher... [more]
D7G5E6_ECTSI4.450e-4240.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485KK80_9STRA8.550e-3339.27Aste57867_8360 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2V475_9STRA2.930e-2837.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DB27_9STRA6.660e-2634.39PA28_beta domain-containing protein n=1 Tax=Nannoc... [more]
W7U0E4_9STRA3.520e-2533.94Proteasome activator subunit 1 n=1 Tax=Nannochloro... [more]
A0A067CUD4_SAPPC3.560e-2534.25PA28_beta domain-containing protein n=2 Tax=Saprol... [more]
A0A5D6XIL9_9STRA1.060e-2434.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662Y6D6_9STRA1.060e-2435.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:1040292..1044922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|57321|CE57320_991
BRITEko00000,ko00001,ko01000,ko03051,ko04147
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03050,ko04612,ko05160,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03050,map04612,map05160
KEGG koko:K00276,ko:K06698
EC1.4.3.21
GOsGO:0000502,GO:0002039,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010941,GO:0010950,GO:0010952,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0036211,GO:0042176,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097371,GO:0098772,GO:1901564,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:2000045,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Preferred namePSME3
Descriptionendopeptidase activator activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4470@1|root,KOG4470@2759|Eukaryota
Evalue5.87e-44
Seed ortholog2880.D7G5E6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome activator pa28, C-terminal domain
Ec32 orthologEc-06_010760.1
TranscriptId57643
TrackFilteredModels1
ProteinId57321
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|57321gene_7454Tribonema minus UTEX_B_3156 geneContig_31 1040292..1044922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|57321Trimin1|57321|CE57320_991Tribonema minus UTEX_B_3156 polypeptideContig_31 1040368..1044848 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7454_6exon_7454_6Tribonema minus UTEX_B_3156 exonContig_31 1040292..1040481 -
exon_7454_5exon_7454_5Tribonema minus UTEX_B_3156 exonContig_31 1040933..1041067 -
exon_7454_4exon_7454_4Tribonema minus UTEX_B_3156 exonContig_31 1042028..1042192 -
exon_7454_3exon_7454_3Tribonema minus UTEX_B_3156 exonContig_31 1043070..1043140 -
exon_7454_2exon_7454_2Tribonema minus UTEX_B_3156 exonContig_31 1043789..1043899 -
exon_7454_1exon_7454_1Tribonema minus UTEX_B_3156 exonContig_31 1044707..1044922 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7454UTR3_7454Tribonema minus UTEX_B_3156 three_prime_UTRContig_31 1040292..1040367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7454CDS_7454Tribonema minus UTEX_B_3156 CDSContig_31 1044707..1044848 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7454UTR5_7454Tribonema minus UTEX_B_3156 five_prime_UTRContig_31 1044849..1044922 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7454 ID=mRNA_7454|Name=jgi.p|Trimin1|57321|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_31:1040292..1044922- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAGAAGACACACACTCACACACCAGACAGCACAGCACGCACACACACA
CACACTCACACAGGAGCTGAAGCGATGGAGGCACTTAAGGAGCAGTCGAA
GTCAGAGGGGGAGGCGGCGCGGGAGGTGGTGCCAACCTTTGTGGCGCACC
TAAATGAAAGTCTCGCCAGCAACTTTGCATATACCGACTTGAGCCAGATT
GAAAGCTCATTCACAGCCGCCGTCGCCGCAGCCGGCAGCGTGCCCGCAAC
GAACGACAAGCTTGCAAAGCTGCTGCCCGCCGTGCAGAGCGACCTGGCCA
CATCCATCAACATCCTGCTGGCGCTATACCGGTGGATCCAGGTCCACGTG
CCCATCATAGAGGACGGCAACAACTTTGGCGTTGGCGTCCAGCAGGAGGT
GGCGAAGCTGATTGCGGAGAGCGTGACCAAGCTGGAAGCGGCGTTTGACA
AGCTGCCGGAGTACCACGAGAAGCGCGCGGGCGCGTGGGAGAAGCTCGCC
GCTAAGGAGGACAGCACCGCCAAGAAGAGCACCAGCAAGTCCACCGTGAC
GGGCGGCAAGGAGGGCGACGAGAACAAGACGACCGTTACAGAGTCGAACG
ACACGAGTTCGTCAACCTCGCGGCAGATACCGGATGGCCTGAGGGCCCTC
GTGACCATGGACGTGCGCTGCTACGTGCAGCTGCACAAGTCTATACAGCT
AGCGCGCGACACCGTCCTGTTCTGCGCCGACATGGTAGAGAAGAACGTCA
CCAAGATCAAAGCGCCCAAGGGCGACGCCGGCCGCCACGGCGCACCGGGC
TTCATGTTCTGAGCATTCGCTAGCAGTTGGATTTGTGCAGCCGCTGCGGC
GTTTCGTGCTGTGAATGACAAGTTCAAAGTGGTAACCA
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protein sequence of jgi.p|Trimin1|57321

>Trimin1|57321|CE57320_991 ID=Trimin1|57321|CE57320_991|Name=jgi.p|Trimin1|57321|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=246bp
MEALKEQSKSEGEAAREVVPTFVAHLNESLASNFAYTDLSQIESSFTAAV
AAAGSVPATNDKLAKLLPAVQSDLATSINILLALYRWIQVHVPIIEDGNN
FGVGVQQEVAKLIAESVTKLEAAFDKLPEYHEKRAGAWEKLAAKEDSTAK
KSTSKSTVTGGKEGDENKTTVTESNDTSSSTSRQIPDGLRALVTMDVRCY
VQLHKSIQLARDTVLFCADMVEKNVTKIKAPKGDAGRHGAPGFMF*
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mRNA from alignment at Contig_31:1040292..1044922-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7454 ID=mRNA_7454|Name=jgi.p|Trimin1|57321|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4631bp|location=Sequence derived from alignment at Contig_31:1040292..1044922- (Tribonema minus UTEX_B_3156 )
TGCAGAAGACACACACTCACACACCAGACAGCACAGCACGCACACACACA
CACACTCACACAGGAGCTGAAGCGATGGAGGCACTTAAGGAGCAGTCGAA
GTCAGAGGGGGAGGCGGCGCGGGAGGTGGTGCCAACCTTTGTGGCGCACC
TAAATGAAAGTCTCGCCAGCAACTTTGCATATACCGACTTGAGCCAGATT
GAAAGCTCATTCACAGGTGAGCATTGCCATACCAGCGTGCACCGTTGCTG
GCCATATGCTTCAGCTGTGATGGCAGGAATCCATGCTTGTTTGTCGCCCT
GAGGCCGGCGTGATTGCATCGCAGGCGTCTATGTACCCCTTTTTTTGGCA
GCTTGCTTGGAATGGCTTGATGTGGTCCACACCGTTAGCTGATGCATCTC
CTCATCAACGTTGTTCGATGTCAGAGTGAAAGTACCAGACTTGTGCCTGT
ACGTCATGACCATCATATAGAGCTCCACTGCTTGCAAGGAATTTGCTTCC
AGCCCCCTATTGCTGTTTTCAGAGTCGTCGTTCCTGCTGGTGTGTCAAAT
CCATCAGTCGCTTGTAGCATGCCGTGCATGCAGTCGAACTTCTCAGCTCT
TGGAGTTAGCTCCTCTCAATCTAAGATGCAGTGTGCATTGGAAGGTTGAG
CTCTGATCGGCGCATCACTACTGAAATGCCAACGAAGCAAGCTGAAAACG
AAGGCACCAGAGAGTATGGCCAAGGCCAAAAGTCCGGAAAATTTTGTCAG
CAATAGGCTGCCACATCACCAATTTCATGCACCACGCTCTCACCAAGTAG
AGCACCTAACAGTAATCTCCAAGCAGGGTTGTCCCTTCTTGCTATAGCGT
GCGGGCCGGACTGTCCTCACTCGACCATTGGCGCGTCGCGGCTAATACCC
CAATGGTACCACCTTGCAAATGGTTTTCTGTATTGCTGGTTGTCGCCGGC
GAGGAAATAAACATGCGCCAACCCTGTCCCTTGCCGCCGCGACCTCTGCG
CGCACCTCTGCATTGCTGAGCAGCCGCCGTCGCCGCAGCCGGCAGCGTGC
CCGCAACGAACGACAAGCTTGCAAAGCTGCTGCCCGCCGTGCAGAGCGAC
CTGGCCACATCCATCAACATCCTGCTGGCGCTATGTGAGTGACAGCATGG
CTCGGTGCACTGGTAGGACGAGCTAAGTTCTTGTTTGGTGTCTGTGTACA
AGCTCATTGCTAGTGCAGTTAACTGAGCCGGCTGAGAAACGCTGGGTGGC
TCCTGCGACTGTACAGCTCCCATGGCGCGCGTGCAACTCTTGCTTCAATG
AGCGGCCTGGCCTTCAGAACAACAACACCTTGCTCGCGCGCTGCGTGCGC
CTGCCGTTGTGCGTGCACGCGGTTGGGACACGCGCAGCAGGGACGTATGC
TTTGCATGCAGTTTGGGGTGCCTCATCCGCATTTTGCACAGACTATACGC
TGGCACGTGCCATACCGCCGGCCGTTGTATAGCACGCTTCACTCCGTGCT
TCTCGCCACCGCACCGCGTGCGGAACCCCGCGCGCCGTCAGAGTTGACAT
AACGGTCGGGACGGAGCGACGCCTGCTTCACAGAGGCGCGTGCTTGTCTA
CCGTTCTGTAGGATGAGAGTCACCTCTCAGCCGCTGCCTTTCCTGGCAAA
CAAGTGGCGGCGCCTCGCCAGACACTTTCCCCGTCACGAGGAAGGAGCAC
ACGCATTGGTGTGCACTTGACCGAAAAACCTGATGTGTCAGCTGACCCCG
CGCCTGGTGCTGCGCGCGCTCTCCTTGTGCAGACCGGTGGATCCAGGTCC
ACGTGCCCATCATAGAGGACGGCAACAACTTTGGCGTTGGCGTCCAGCAG
GAGGTGAGGGGCGCGCGAAAGTAGAATGTTTTGCAAGTTTTAGCATTAGC
AGGTGGGGCTGGGTGTCGCGCGCGCACCGCTGCCCCGTGTCCCTGCCACA
TGTCACTCATGACGCAACCATTCCCTGTACAGTAGTAAAAGAGGAAGCTC
CGATTGTCGTCCGCCCGGGCGCGCTCGACGTGTGCAGTGCTCAGCTCGCG
GCGCGGTTCGCGCGCAGAGAGAGGGTTGGGTTAGGGTCAGGGTTAGGTCA
GCGCAGGCCGGCACGTCGTACGCCTCGACTAGCGCTGACACGGCGCATAA
TGCTCGTGAGAGATCTGCAGCAGCGCGGTGGCAGCTGTCGCGTGCGGGCG
TGCCAATTTGGCAACACGTGGCGTGGGTGGCAGGATGGAGCGCGCGAGTC
CCAGCGCTCAGCATACATATCGCATGTACCAACGGATGTCACGCTTTTGG
CCTGTGACGCTCCCCACTTCGCCCGGAGCACACGTCAACTCGCACACTCG
CGTCAGCAATAGGGCACCAGCAGCTCACTTCGCTCACGCTACGTGCGAGC
CCCTCCTTTGTGTTGAAGTTCAAGCTGAAGTTGATGTGCTGACCGCGCGC
AGGCCCGCCAGCCTTCGCTTCTACGGGCATGCGTAAGTGACTGAGCTCAT
TGCGAGAAACATGACCAAGCTTCTGGCAATTATGCTTATGGAAGGTGTAG
GTGAAGCTGAAGTTGGTGCTGTGACTGCTTGTGGGGCCTCTCTTGCCGAC
GCAGGTGGCAAAGCTCATCGCGGAGAGCGCCACCAAACTTCAGGCAACGT
TCGATCACCGGTCATCAAACTTGTACTTCCTGTTGAACTTGGTGGTCTTA
CTGCATGTGGGGCGTCTCCCGCTGGCGCAGGTGGCGAAGCTGATTGCGGA
GAGCGTGACCAAGCTGGAAGCGGCGTTTGACAAGCTGCCGGAGTACCACG
AGAAGCGCGCGGGCGCGTGGGAGAAGCTCGCCGCTAAGGAGGACAGCACC
GCCAAGAAGAGCACCAGCAAGTCCACCGTGACGGGCGGCAAGGAGGTGAG
AGGGGCTGCAGCTGAAGTGAACTGACTGTAGTCCTTCTCACGTGATGACA
ACTGAAGTGAACTAACTCGCTGTAGTCTAGTCACATGAAGTCGACTGCTG
GTTATGAGAGCAACAAAAGACGCTACTGATCTCTGTACGGCGTAGAAGCG
CGCTTGCGGTCATCAGCTAGGGCTGCGCAATTATTTATCCTTCACTGCAA
ATAAGTTGCATTGAGCAACACAAGTGCGGGGTCGTACGCAAGGGCTGGCA
GTGAAGGCGCCGAGCAGCGCAGCGACAGCAGTGCTCAACCTGTAGCTGGC
GACCTGCGCTTGCCCTGCCACAAAGAGCACATGACCGTTTGTACATGTAT
ATATGGCGTTATCGTAGTTCAGTCACTTCCATGCGGTGACGTCACACGCG
CACGAATGCGCAGCCATCTGTGGCAATGTTCGGCTGATCGACACAATGTG
TCCCCGTTTTGCACTACGCAAAGGCACGCTCTGGCGCTCGTGAGCTCCAT
GCGCGCGCTGCCGGCTGCATACAACCACATGAACACCTTGCGCAACATGT
ACCACGCATGCTGCATCAGCACTGCGATACTTTGAAGTACTTGTCTGCAT
GCCAATGAAGCGCGGCTTCGCAGAGGTATGTATATACGTCGCCGCCACTG
GCTGCATCAGACCGCAAAGTATGTGCTACTAGGCACGCTGCGTCGACCTA
CGTAGCCCAATGTTGCAGAGGTATGTTACGTATATCGCCCACTCGACTGC
ATCGTTGCTGAGCCGTGCTAATATCTCGTCCGCCTTTCCACGCGCGCGCT
CAGGGCGATGCATACAACACATGCTGCTTCGGCAATGCGGTGCCTGAGTG
CACGCCTACGCAGCTGCATTTCGCAGAGAGTACATATCGCCCACTCGACT
GCATCGTTGCTGAGCCGTGTCCATGTTTTGTCCGCCTTTTTGCGCACGCG
CTCAGGGCGACGAGAACAAGACGACCGTTACAGAGTCGAACGACACGAGT
TCGTCAACCTCGCGGCAGATACCGGATGGCCTGAGGGCCCTCGTGACCAT
GGACGTGCGCTGCTACGTGCAGCTGCACAAGTCTATACAGGTGAGGGCAC
GCCTGCTGACAGCAGTGCTCATCACCATTTGATGTGTACGTTTTTGCCGC
CTTGCTCTGGGTGAGGGCACGCCTCCTGTCATGATCATGAGATGTGTTAC
GTATTCGCCAGTCTGCGCCGCCTTGAACATGAATTCAAGCGCGATGCGAG
CATGTGTGCATGCAGCCATATTGGTGTGTGATGCTGCTGCTGCTCTGCCC
CTTCCATTTCCTGTCCCTGTTGCACCTGTGTGCCCCCCCCGTAGAACACA
CTGCATTTTCAATGTACTATGCGGTAAACAATATGTGTACCTGTCGCCAC
CTTTGCTGTCAGTCCTTGCAGCTACAACTCAGTAGAGAACACCGCATTGC
CTGCCCCTCAGTTGCGTGCCACAACCTGATTCAACCCCCCCCCCCCACCC
CCCATCCCCCTCCCCTCCCCCCCCCCTTGCTGCACGTGCAGCTAGCGCGC
GACACCGTCCTGTTCTGCGCCGACATGGTAGAGAAGAACGTCACCAAGAT
CAAAGCGCCCAAGGGCGACGCCGGCCGCCACGGCGCACCGGGCTTCATGT
TCTGAGCATTCGCTAGCAGTTGGATTTGTGCAGCCGCTGCGGCGTTTCGT
GCTGTGAATGACAAGTTCAAAGTGGTAACCA
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Coding sequence (CDS) from alignment at Contig_31:1040292..1044922-

>mRNA_7454 ID=mRNA_7454|Name=jgi.p|Trimin1|57321|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=738bp|location=Sequence derived from alignment at Contig_31:1040292..1044922- (Tribonema minus UTEX_B_3156 )
ATGGAGGCACTTAAGGAGCAGTCGAAGTCAGAGGGGGAGGCGGCGCGGGA
GGTGGTGCCAACCTTTGTGGCGCACCTAAATGAAAGTCTCGCCAGCAACT
TTGCATATACCGACTTGAGCCAGATTGAAAGCTCATTCACAGCCGCCGTC
GCCGCAGCCGGCAGCGTGCCCGCAACGAACGACAAGCTTGCAAAGCTGCT
GCCCGCCGTGCAGAGCGACCTGGCCACATCCATCAACATCCTGCTGGCGC
TATACCGGTGGATCCAGGTCCACGTGCCCATCATAGAGGACGGCAACAAC
TTTGGCGTTGGCGTCCAGCAGGAGGTGGCGAAGCTGATTGCGGAGAGCGT
GACCAAGCTGGAAGCGGCGTTTGACAAGCTGCCGGAGTACCACGAGAAGC
GCGCGGGCGCGTGGGAGAAGCTCGCCGCTAAGGAGGACAGCACCGCCAAG
AAGAGCACCAGCAAGTCCACCGTGACGGGCGGCAAGGAGGGCGACGAGAA
CAAGACGACCGTTACAGAGTCGAACGACACGAGTTCGTCAACCTCGCGGC
AGATACCGGATGGCCTGAGGGCCCTCGTGACCATGGACGTGCGCTGCTAC
GTGCAGCTGCACAAGTCTATACAGCTAGCGCGCGACACCGTCCTGTTCTG
CGCCGACATGGTAGAGAAGAACGTCACCAAGATCAAAGCGCCCAAGGGCG
ACGCCGGCCGCCACGGCGCACCGGGCTTCATGTTCTGA
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