mRNA_7220 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144928
Unique NamemRNA_7220
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|144928 vs. uniprot
Match: A0A836CHT0_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.830e-51
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 
Query:    1 DGAAVVSIMHHCSSVGAVQARCAQLLADMAVDAASRTKLSADGACEGVVAGMITHVQNADVQWQCAGAVSSLSDGCFSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHKMSFDFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWLSFENVANTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGDLAVDAA 624
            DGAAVVSIMHHCSSVGAVQARCAQLLADMAVDAASRTKLSADGACEGVVAGMITHVQNADVQWQCAGAVSSLSDGCFSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHKMSFDFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWLSFENVANTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGDLAVDAA
Sbjct:    1 DGAAVVSIMHHCSSVGAVQARCAQLLADMAVDAASRTKLSADGACEGVVAGMITHVQNADVQWQCAGAVSSLSDGCFSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHKMSFDFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIWLSFENVANTIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGDLAVDAA 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144928 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CHT0_9STRA1.830e-51100.00Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:1085296..1086162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144928|gw1.21.123.1
Hectar predicted targeting categoryother localisation
TranscriptId145250
TrackFilteredModels1
ProteinId144928
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144928gene_7220Tribonema minus UTEX_B_3156 geneContig_21 1085296..1086162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7220_1exon_7220_1Tribonema minus UTEX_B_3156 exonContig_21 1085296..1086162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7220CDS_7220Tribonema minus UTEX_B_3156 CDSContig_21 1085296..1086162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144928Trimin1|144928|gw1.21.123.1Tribonema minus UTEX_B_3156 polypeptideContig_21 1085296..1086162 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7220 ID=mRNA_7220|Name=jgi.p|Trimin1|144928|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_21:1085296..1086162- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGGGGCTGCAGTGGTAAGTATCATGCACCACTGCTCGAGCGTTGGTGC
CGTACAGGCGAGATGTGCTCAGTTGTTGGCTGATATGGCTGTCGATGCCG
CCAGCCGCACCAAGCTCAGCGCAGATGGAGCATGCGAAGGGGTCGTGGCA
GGCATGATTACTCACGTACAGAATGCTGACGTACAGTGGCAGTGTGCAGG
CGCAGTTAGCTCCCTGTCGGACGGGTGTTTTTCCAACCGCAACAAACTGC
GCGCAGCTGGGGTGTGCAACGCGCTGGTGGCGGGTATGGCCGCTCACAAA
CACAACCCCGCAGTGCAGTGGCGGGGTGCGTGCGCTGTACACAAGATGAG
CTTTGACTTCGACAACCGCACGGAGCTCGGCAAGGCTGGGGCATGCGAAG
CAGCAGTGACGGGCATGCTGAAACACAAGCACAACGCTAATGTGCAGCAG
GCATGCGCGCTGGCGATAATATGGCTGTCATTCGAGAATGTCGCCAACAC
AATAAGGCTGGGTGCAGCTGGGGCGTGCGAAGCAGTGCTGGCAGGCGTAC
TTGCCCACGATCACAATGTTGACGTGCAGGATCGTTGCGCGCAGGCTATC
GGCGACCTGGCTGTTGACGCCGCCAACTGCGCGAACCTGGGCGCAGCTGG
GGCGTGCGAAACAGTAGTGAATGTCATGCTAGTCCACAGGCCCCATGCGA
ACGTGCAGTGGCATTGTGCACGGGCGGTCAACAACCTGGCAAACAACACT
GCCAACAACAACCAGCTGGGCGCAGCTGGGGCATGCGCAGCGATCGTAAC
AGCCATGCGCGCCCACACGGACAATCCCACGGTGCAGCAATGGTGCAGGT
CAGCAGTAGACAGATTG
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protein sequence of jgi.p|Trimin1|144928

>Trimin1|144928|gw1.21.123.1 ID=Trimin1|144928|gw1.21.123.1|Name=jgi.p|Trimin1|144928|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
DGAAVVSIMHHCSSVGAVQARCAQLLADMAVDAASRTKLSADGACEGVVA
GMITHVQNADVQWQCAGAVSSLSDGCFSNRNKLRAAGVCNALVAGMAAHK
HNPAVQWRGACAVHKMSFDFDNRTELGKAGACEAAVTGMLKHKHNANVQQ
ACALAIIWLSFENVANTIRLGAAGACEAVLAGVLAHDHNVDVQDRCAQAI
GDLAVDAANCANLGAAGACETVVNVMLVHRPHANVQWHCARAVNNLANNT
ANNNQLGAAGACAAIVTAMRAHTDNPTVQQWCRSAVDRL
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mRNA from alignment at Contig_21:1085296..1086162-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7220 ID=mRNA_7220|Name=jgi.p|Trimin1|144928|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_21:1085296..1086162- (Tribonema minus UTEX_B_3156 )
GATGGGGCTGCAGTGGTAAGTATCATGCACCACTGCTCGAGCGTTGGTGC
CGTACAGGCGAGATGTGCTCAGTTGTTGGCTGATATGGCTGTCGATGCCG
CCAGCCGCACCAAGCTCAGCGCAGATGGAGCATGCGAAGGGGTCGTGGCA
GGCATGATTACTCACGTACAGAATGCTGACGTACAGTGGCAGTGTGCAGG
CGCAGTTAGCTCCCTGTCGGACGGGTGTTTTTCCAACCGCAACAAACTGC
GCGCAGCTGGGGTGTGCAACGCGCTGGTGGCGGGTATGGCCGCTCACAAA
CACAACCCCGCAGTGCAGTGGCGGGGTGCGTGCGCTGTACACAAGATGAG
CTTTGACTTCGACAACCGCACGGAGCTCGGCAAGGCTGGGGCATGCGAAG
CAGCAGTGACGGGCATGCTGAAACACAAGCACAACGCTAATGTGCAGCAG
GCATGCGCGCTGGCGATAATATGGCTGTCATTCGAGAATGTCGCCAACAC
AATAAGGCTGGGTGCAGCTGGGGCGTGCGAAGCAGTGCTGGCAGGCGTAC
TTGCCCACGATCACAATGTTGACGTGCAGGATCGTTGCGCGCAGGCTATC
GGCGACCTGGCTGTTGACGCCGCCAACTGCGCGAACCTGGGCGCAGCTGG
GGCGTGCGAAACAGTAGTGAATGTCATGCTAGTCCACAGGCCCCATGCGA
ACGTGCAGTGGCATTGTGCACGGGCGGTCAACAACCTGGCAAACAACACT
GCCAACAACAACCAGCTGGGCGCAGCTGGGGCATGCGCAGCGATCGTAAC
AGCCATGCGCGCCCACACGGACAATCCCACGGTGCAGCAATGGTGCAGGT
CAGCAGTAGACAGATTG
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Coding sequence (CDS) from alignment at Contig_21:1085296..1086162-

>mRNA_7220 ID=mRNA_7220|Name=jgi.p|Trimin1|144928|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_21:1085296..1086162- (Tribonema minus UTEX_B_3156 )
GATGGGGCTGCAGTGGTAAGTATCATGCACCACTGCTCGAGCGTTGGTGC
CGTACAGGCGAGATGTGCTCAGTTGTTGGCTGATATGGCTGTCGATGCCG
CCAGCCGCACCAAGCTCAGCGCAGATGGAGCATGCGAAGGGGTCGTGGCA
GGCATGATTACTCACGTACAGAATGCTGACGTACAGTGGCAGTGTGCAGG
CGCAGTTAGCTCCCTGTCGGACGGGTGTTTTTCCAACCGCAACAAACTGC
GCGCAGCTGGGGTGTGCAACGCGCTGGTGGCGGGTATGGCCGCTCACAAA
CACAACCCCGCAGTGCAGTGGCGGGGTGCGTGCGCTGTACACAAGATGAG
CTTTGACTTCGACAACCGCACGGAGCTCGGCAAGGCTGGGGCATGCGAAG
CAGCAGTGACGGGCATGCTGAAACACAAGCACAACGCTAATGTGCAGCAG
GCATGCGCGCTGGCGATAATATGGCTGTCATTCGAGAATGTCGCCAACAC
AATAAGGCTGGGTGCAGCTGGGGCGTGCGAAGCAGTGCTGGCAGGCGTAC
TTGCCCACGATCACAATGTTGACGTGCAGGATCGTTGCGCGCAGGCTATC
GGCGACCTGGCTGTTGACGCCGCCAACTGCGCGAACCTGGGCGCAGCTGG
GGCGTGCGAAACAGTAGTGAATGTCATGCTAGTCCACAGGCCCCATGCGA
ACGTGCAGTGGCATTGTGCACGGGCGGTCAACAACCTGGCAAACAACACT
GCCAACAACAACCAGCTGGGCGCAGCTGGGGCATGCGCAGCGATCGTAAC
AGCCATGCGCGCCCACACGGACAATCCCACGGTGCAGCAATGGTGCAGGT
CAGCAGTAGACAGATTG
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