mRNA_7183 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144805
Unique NamemRNA_7183
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A835ZB57_9STRA (AMP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB57_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.090e-31
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV
Sbjct:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 53
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A835Z6J1_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.120e-26
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +TAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV
Sbjct:  463 KTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 515
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: D7G3S9_ECTSI (Long chain acyl-coA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.070e-19
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +TAETIDE+GW+HSGDVATFD++    +  PSGFMRITGRIKELIITAGGENV
Sbjct:   94 KTAETIDEDGWMHSGDVATFDEDGDPRIEGPSGFMRITGRIKELIITAGGENV 146
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A6H5K7V3_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.510e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +TAETIDE+GW+HSGDVATFD++    +  PSGF+RITGRIKELIITAGGENV
Sbjct:  191 KTAETIDEDGWMHSGDVATFDEDGDPRITGPSGFVRITGRIKELIITAGGENV 243
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: D7G3T1_ECTSI (Long chain acyl-coA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.810e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +TAETIDE+GW+HSGDVATFD++    +  PSGF+RITGRIKELIITAGGEN+
Sbjct:  466 KTAETIDEDGWMHSGDVATFDEDGDPRIEGPSGFVRITGRIKELIITAGGENI 518
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A6H5KWQ0_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.830e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +TAETIDE+GW+HSGDVATFD++       PSGFM+ITGRIKELIITAGGENV
Sbjct:  466 KTAETIDEDGWMHSGDVATFDEDGDDRTEGPSGFMQITGRIKELIITAGGENV 518
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A482RSC8_9ARCH (AMP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSC8_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 2.730e-17
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +T+ETID +G+LHSGDVA FD ++  ++P PSGFMRITGRIKEL+ITAGGENV
Sbjct:  160 ETSETIDADGYLHSGDVAEFDSDHDPNVPKPSGFMRITGRIKELLITAGGENV 212
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A7S2VCD9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VCD9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.420e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +T +TIDEEGW++SGDV  FDD+N   +  PSGFM ITGRIKELIITAGGENV
Sbjct:  240 ETKKTIDEEGWMYSGDVVKFDDHNDPAIAKPSGFMTITGRIKELIITAGGENV 292
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BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A7S2Y6D0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6D0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.620e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +T +TIDEEGW++SGDV  FDD+N   +  PSGFM ITGRIKELIITAGGENV
Sbjct:  467 ETKKTIDEEGWMYSGDVVKFDDHNDPAIAKPSGFMTITGRIKELIITAGGENV 519
[Close]
BLAST of jgi.p|Trimin1|144805 vs. uniprot
Match: A0A7S3M9T8_9STRA (Hypothetical protein n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9T8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.090e-16
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGGENV 159
            +TAETID++G+LHSGDVA FD++   D+  P GFM+ITGRIKELIITAGGENV
Sbjct:  348 KTAETIDDDGFLHSGDVAEFDNDVDKDIVGPGGFMKITGRIKELIITAGGENV 400
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144805 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB57_9STRA3.090e-31100.00AMP-binding domain-containing protein (Fragment) n... [more]
A0A835Z6J1_9STRA1.120e-2698.11Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
D7G3S9_ECTSI1.070e-1977.36Long chain acyl-coA synthetase n=1 Tax=Ectocarpus ... [more]
A0A6H5K7V3_9PHAE1.510e-1875.47AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7G3T1_ECTSI2.810e-1873.58Long chain acyl-coA synthetase n=1 Tax=Ectocarpus ... [more]
A0A6H5KWQ0_9PHAE3.830e-1875.47AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A482RSC8_9ARCH2.730e-1771.70AMP-binding domain-containing protein (Fragment) n... [more]
A0A7S2VCD9_9STRA1.420e-1671.70Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2Y6D0_9STRA1.620e-1671.70Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3M9T8_9STRA4.090e-1671.70Hypothetical protein n=3 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:706286..706444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144805|gw1.21.121.1
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01004
KEGG rclassRC00004,RC00014
KEGG ReactionR01280
KEGG ModuleM00086
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko03320,ko04920,map00061,map00071,map01100,map01212,map03320,map04920
KEGG koko:K01304,ko:K15013
EC3.4.19.3,6.2.1.3
GOsGO:0000003,GO:0000038,GO:0001552,GO:0001676,GO:0003006,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007272,GO:0007275,GO:0007399,GO:0007498,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009888,GO:0009987,GO:0010033,GO:0012505,GO:0014070,GO:0015645,GO:0016020,GO:0016042,GO:0016053,GO:0016054,GO:0016289,GO:0016405,GO:0016787,GO:0016788,GO:0016790,GO:0016874,GO:0016877,GO:0016878,GO:0018130,GO:0019395,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0022414,GO:0030258,GO:0031957,GO:0031960,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034440,GO:0034641,GO:0034654,GO:0034976,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042221,GO:0042552,GO:0042592,GO:0042749,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045187,GO:0045938,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046545,GO:0046660,GO:0046949,GO:0047617,GO:0048513,GO:0048518,GO:0048520,GO:0048545,GO:0048608,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050795,GO:0050896,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051716,GO:0055086,GO:0055088,GO:0055090,GO:0055114,GO:0060249,GO:0061458,GO:0065007,GO:0065008,GO:0070050,GO:0070328,GO:0071616,GO:0071704,GO:0072329,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576
Preferred nameACSBG1
Descriptiondecanoate-CoA ligase activity
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1022@1|root,KOG1256@2759|Eukaryota
Evalue8.19e-16
Seed ortholog2850.Phatr45510
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionlong chain acyl-coA synthetase
Ec32 orthologEc-03_003710.1
TranscriptId145127
TrackFilteredModels1
ProteinId144805
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144805gene_7183Tribonema minus UTEX_B_3156 geneContig_21 706286..706444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7183_1exon_7183_1Tribonema minus UTEX_B_3156 exonContig_21 706286..706444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7183CDS_7183Tribonema minus UTEX_B_3156 CDSContig_21 706286..706444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144805Trimin1|144805|gw1.21.121.1Tribonema minus UTEX_B_3156 polypeptideContig_21 706286..706444 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7183 ID=mRNA_7183|Name=jgi.p|Trimin1|144805|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_21:706286..706444- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGACGGCAGAGACAATTGACGAGGAAGGCTGGCTTCACTCCGGAGATGT
GGCAACGTTTGATGACAACAACCGCACAGATATGCCTGCACCCAGCGGCT
TCATGCGCATCACGGGTCGCATCAAGGAGCTCATCATCACTGCGGGAGGC
GAAAATGTA
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protein sequence of jgi.p|Trimin1|144805

>Trimin1|144805|gw1.21.121.1 ID=Trimin1|144805|gw1.21.121.1|Name=jgi.p|Trimin1|144805|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
QTAETIDEEGWLHSGDVATFDDNNRTDMPAPSGFMRITGRIKELIITAGG
ENV
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mRNA from alignment at Contig_21:706286..706444-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7183 ID=mRNA_7183|Name=jgi.p|Trimin1|144805|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_21:706286..706444- (Tribonema minus UTEX_B_3156 )
CAGACGGCAGAGACAATTGACGAGGAAGGCTGGCTTCACTCCGGAGATGT
GGCAACGTTTGATGACAACAACCGCACAGATATGCCTGCACCCAGCGGCT
TCATGCGCATCACGGGTCGCATCAAGGAGCTCATCATCACTGCGGGAGGC
GAAAATGTA
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Coding sequence (CDS) from alignment at Contig_21:706286..706444-

>mRNA_7183 ID=mRNA_7183|Name=jgi.p|Trimin1|144805|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_21:706286..706444- (Tribonema minus UTEX_B_3156 )
CAGACGGCAGAGACAATTGACGAGGAAGGCTGGCTTCACTCCGGAGATGT
GGCAACGTTTGATGACAACAACCGCACAGATATGCCTGCACCCAGCGGCT
TCATGCGCATCACGGGTCGCATCAAGGAGCTCATCATCACTGCGGGAGGC
GAAAATGTA
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