mRNA_7181 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA) HSP 1 Score: 307 bits (786), Expect = 4.860e-106 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF Sbjct: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 144
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.020e-50 Identity = 81/145 (55.86%), Postives = 99/145 (68.28%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALS-VPGRTENSIKARF 432 +W +EDERL AVQ HG WK IAA VG+R+HVQCLQRWKKVLRP L+KG+WT EDA L TV + T NW V L RT RQC+ RW+HHLDPD+KR +T EDA IL + GNRW+ IA +PGR + +I+ R+ Sbjct: 11 KWAPDEDERLNAAVQAHGATKWKRIAAQVGTRNHVQCLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQCQLRWQHHLDPDIKRGSFTAAEDALILEGFKRFGNRWKHIARKHLPGRIDYTIRGRY 155
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA) HSP 1 Score: 172 bits (436), Expect = 4.530e-50 Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 +WT EDE LR AV+++GE +WK IA +VG+R+HVQCLQRWKKVL+PGL KG+W+A EDA+L V NW + + GRTS+QCRERW HHLDP +K+ EYT +ED IL + GN+W +IA +PGRTEN++K R+ Sbjct: 29 KWTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKGFK-NWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRW 171
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI) HSP 1 Score: 168 bits (426), Expect = 3.810e-49 Identity = 83/144 (57.64%), Postives = 101/144 (70.14%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPL-NWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKAR 429 RW ED++L AV+ GE WK IA VGSR+HVQCLQRWKKVLRPGL KG+W A EDA L + A P NW + +S++GRTS+QCRERW HHLDP + + YT +ED I+ + + GNRW QIA +PGRTENSIK R Sbjct: 108 RWQPAEDKKLTLAVKESGEKDWKSIALKVGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATA--PFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIR 249
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 160 bits (406), Expect = 8.180e-48 Identity = 79/144 (54.86%), Postives = 97/144 (67.36%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 RWT EEDE+LR+AV RHGE +WK IA +V R+H QCLQRW KVL PGL KG W ED L VA NW V + GRTS+QCRERW +HLDP + R EY+ +ED IL + + GNRW IA +PGRTE+++K R+ Sbjct: 11 RWTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGRK-NWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 153
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA) HSP 1 Score: 162 bits (410), Expect = 8.640e-48 Identity = 80/144 (55.56%), Postives = 97/144 (67.36%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 RWTA EDE LR AV+ H E +WK IAA V R+H QCLQRW KVL PGL KG W+ ED L R VAA NW V + GRTS+QCRERW +HLDP + R Y+P+ED IL + + GNRW IA +PGRTE+++K R+ Sbjct: 7 RWTAAEDEALRSAVESHREKNWKAIAAHVAGRNHTQCLQRWTKVLAPGLVKGHWSPHEDELLRRLVAA-DQKNWGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRW 149
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A024UVV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVV8_9STRA) HSP 1 Score: 169 bits (428), Expect = 9.090e-48 Identity = 77/144 (53.47%), Postives = 100/144 (69.44%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 RWT E+DE LR A++ G +WK IA V R+H QCLQRW KVL+PGL KG W A ED L R V T +NW + KS+ GRT++QCRERWK+HLDP + + Y+ DED + A++ + GNRW QIA +PGRTE+S+K R+ Sbjct: 42 RWTPEQDELLRLAIEEFGSKNWKAIAERVPGRNHAQCLQRWNKVLKPGLVKGHWAADEDENLVRLVQNSTTVNWGEISKSIEGRTAKQCRERWKNHLDPSINKGPYSSDEDMLLAAAYAELGNRWTQIANRLPGRTEDSVKMRW 185
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 162 bits (409), Expect = 2.600e-47 Identity = 79/144 (54.86%), Postives = 98/144 (68.06%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 RWT EED++LR+AV RHGE +WK IA +V R+H QCLQRW KVL PGL KG W ED L VA NW V + GRTS+QCRERW +HLDP + R EY+P+ED IL + + GNRW IA +PGRTE+++K R+ Sbjct: 84 RWTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGRK-NWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 226
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.310e-47 Identity = 84/144 (58.33%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPL-NWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKAR 429 RW EED++L AV+ GE WK IA VGSR+HVQCLQRWKKVLRPGL KG+W A EDA L + A P NW + +S++GRTS+QCRERW HHLDP + + YT +ED I+ + + GNRW QIA +PGRTENSIK R Sbjct: 115 RWQPEEDKKLTLAVKESGEKDWKSIALKVGSRNHVQCLQRWKKVLRPGLVKGQWDAEEDAALMKLATA--PFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIR 256
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Match: A0A1V9ZSD4_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSD4_9STRA) HSP 1 Score: 163 bits (413), Expect = 5.190e-46 Identity = 71/144 (49.31%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 432 RWT E+DE+L+ ++++G +WK IA+ V R+H QCLQRW KVL+PGL KG W+ ED L + V T +NW+ + K + GRT++QCRERWK+HLDP + + Y DED ++ ++ + GNRW QIA +PGRTE+S+K R+ Sbjct: 41 RWTREQDEQLKSGIEKYGTKNWKAIASMVPGRNHAQCLQRWNKVLKPGLVKGHWSFDEDDALIKLVRNATTINWADISKQVPGRTAKQCRERWKNHLDPTINKGPYKSDEDLVLMNAYQELGNRWTQIAELLPGRTEDSVKMRW 184 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155544 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7181 ID=mRNA_7181|Name=jgi.p|Trimin1|155544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_21:695990..698648+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGATGGACTGCGGAAGAGGATGAGCGACTGCGGAAAGCCGTGCAGCGGCAback to top protein sequence of jgi.p|Trimin1|155544 >Trimin1|155544|gw1.21.180.1 ID=Trimin1|155544|gw1.21.180.1|Name=jgi.p|Trimin1|155544|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRback to top mRNA from alignment at Contig_21:695990..698648+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7181 ID=mRNA_7181|Name=jgi.p|Trimin1|155544|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2659bp|location=Sequence derived from alignment at Contig_21:695990..698648+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_21:695990..698648+ >mRNA_7181 ID=mRNA_7181|Name=jgi.p|Trimin1|155544|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_21:695990..698648+ (Tribonema minus UTEX_B_3156 )back to top |