mRNA_7170 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A835Z1R9_9STRA (GAF domain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R9_9STRA) HSP 1 Score: 344 bits (883), Expect = 7.330e-120 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 Query: 1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQVWCQ 519 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQVWCQ Sbjct: 1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQVWCQ 173
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A6B2L196_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L196_9EUKA) HSP 1 Score: 168 bits (426), Expect = 1.650e-46 Identity = 89/167 (53.29%), Postives = 115/167 (68.86%), Query Frame = 1 Query: 10 SLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPL-ILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQ 507 SL V+D+ + FDRIT LA+RLF+VPI L+SLVDA RQWFK+R GL +ETPR SFCAY L APD+ VV D+L+D RFR +P+V GPP +RFYAGA L + VKLG LCL+DT P E F + +K L+ LA VV +L+ + ++ +ITA HNL+ Sbjct: 3 SLHVLDTPPDLPFDRITSLASRLFKVPIALVSLVDAHRQWFKSRYGLEASETPRHCSFCAYAVLEDAPDIFVVLDSLKDPRFRENPLVLGPPFVRFYAGAALNYTDDVKLGTLCLIDTVPREH--FTLEEKMQLMDLASVVVTQLKFLMVQEQSRMTYITATTHNLR 167
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: UPI001EE31374 (GAF domain-containing protein n=1 Tax=Methylobacterium iners TaxID=418707 RepID=UPI001EE31374) HSP 1 Score: 160 bits (406), Expect = 4.940e-46 Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = 1 Query: 1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPL-ILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVEL 441 +LR LQ++D AE S DRITR+A RLF VPI L+SL+DA+RQWFK+R GL+ TPRD +FC YT + V VVPDA DRRF +P+VTG PH+RFYAGAPL + G++LG+LCL+DT P + F AD L ALA VV E+ Sbjct: 20 VLRGLQLIDGVAEPSLDRITRIAQRLFEVPIALVSLIDADRQWFKSRCGLTAESTPRDQAFCNYTIEHDS--VFVVPDARADRRFSSNPLVTGAPHIRFYAGAPLTVAPGIRLGSLCLIDTRPRD---FHPADMQRLAALATQVVGEI 162
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A2U8W863_9HYPH (Diguanylate cyclase n=1 Tax=Methylobacterium durans TaxID=2202825 RepID=A0A2U8W863_9HYPH) HSP 1 Score: 155 bits (392), Expect = 5.960e-44 Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 1 Query: 4 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGH 480 LR LQV+D+ E SFDR+ +A +F VPI L+SL+D++RQWFKA+ GL+V+ET RD +FC YT L V+ VPDA RD F ++P+VTG PH+RFYAGAPLI G++LG+LC++DT P E F AD L LA+ V E+ R +LRG + H Sbjct: 15 LRRLQVLDTPPEPSFDRLVEIARSVFGVPIALVSLIDSDRQWFKAKCGLAVSETHRDLAFCNYTILHDT--VLAVPDARRDPTFANNPLVTGEPHIRFYAGAPLITAPGIRLGSLCVIDTKPRE---FDAADARVLAGLAKIAVDEIWLRD-LLRGDIPH 168
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A2V3XR01_9BURK (PAS domain S-box-containing protein/diguanylate cyclase (GGDEF)-like protein n=7 Tax=Paraburkholderia TaxID=1822464 RepID=A0A2V3XR01_9BURK) HSP 1 Score: 161 bits (407), Expect = 2.750e-43 Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 1 Query: 4 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLIL-EGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGH 480 L+ L ++DS+ EE+FDRI RLAAR FRVPI L+SLVD +RQWFK+ G++ ETPR SFCA+ L+ P +VV DAL D RF +P+V G PH+RFYAGAPL L +G +G LCL+DTAP AF +AD L A+ V EL+ RR+++R + H Sbjct: 17 LQRLDILDSEPEEAFDRIARLAARAFRVPIVLVSLVDEDRQWFKSHYGIAACETPRSMSFCAHAVLSKRP--LVVEDALDDERFLDNPLVLGAPHIRFYAGAPLRLADGQVVGTLCLIDTAPR---AFEIADVETLADYAQLVERELEVRRKLIRSRTAH 171
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A5N5TWV0_9GAMM (Sensor domain-containing diguanylate cyclase n=28 Tax=Shewanella TaxID=22 RepID=A0A5N5TWV0_9GAMM) HSP 1 Score: 154 bits (388), Expect = 8.710e-43 Identity = 78/158 (49.37%), Postives = 106/158 (67.09%), Query Frame = 1 Query: 4 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQL 474 L+ L V+D++AEE FDRI+R+A RLF VPICL+SLVDA+RQWFK+ G+S+ ETPRD SFC + L+ P+ +++PD L+D RF +P+VTG PH+RFYAG PL + G ++G C++D P E DK L L V ELQ V + +L Sbjct: 17 LQGLGVLDTEAEERFDRISRMAQRLFEVPICLVSLVDAKRQWFKSSLGISLRETPRDQSFCGHAILS--PESMLIPDTLKDPRFADNPLVTGAPHIRFYAGYPLTMRNGCRVGTFCIIDVRPRE---LSQEDKLCLEDLGHMVENELQHMEEVCQDEL 169
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A4R6NB05_9BURK (Diguanylate cyclase with GAF sensor n=1 Tax=Kinneretia asaccharophila TaxID=582607 RepID=A0A4R6NB05_9BURK) HSP 1 Score: 153 bits (386), Expect = 1.950e-42 Identity = 83/177 (46.89%), Postives = 112/177 (63.28%), Query Frame = 1 Query: 4 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRR----RVLRGQLGHITAVAHNLQVWCQ 519 LRSL ++D+ EE FDR+TRLA RLF VPI LISLVDA RQWFK+ G++ ETPR+ SFC + L A ++ ++PDA +D RF +P+VTG PH+RFYAG PL + G +LG LCL+DT P + A +A +L +AE + +Q L + G + H LQ WC+ Sbjct: 17 LRSLNILDTPTEERFDRLTRLAKRLFGVPIVLISLVDAHRQWFKSCVGVNATETPREVSFCGHAIL--ADEIFLIPDATQDPRFADNPLVTGEPHIRFYAGCPLSVGVGGRLGTLCLIDTEPRQMSADDLALLRDLARMAEQELAAVQMATLDELTGLSNRRGFMALAQHALQ-WCE 190
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: UPI000B360124 (sensor domain-containing diguanylate cyclase n=1 Tax=Thaumasiovibrio subtropicus TaxID=1891207 RepID=UPI000B360124) HSP 1 Score: 152 bits (385), Expect = 2.560e-42 Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = 1 Query: 4 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAE 423 LR L+V+D++ EE +DRITRLA RLF VPI L+SLVD RQWFK+ GL V ETPRD SFC + L P ++ DA D RF +P+VTGPPH+RFYAG PL+ E G KLG LC++D+ PH + D +L +AE Sbjct: 17 LRGLKVLDTEPEERYDRITRLARRLFNVPIALVSLVDENRQWFKSCFGLDVTETPRDISFCGHAILDNKP--FIIEDAREDSRFADNPLVTGPPHIRFYAGIPLVHEDGEKLGTLCIIDSEPHTLSCEEIEDLIDLAKMAE 155
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A848VJL0_9BACT (Sensor domain-containing diguanylate cyclase n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A848VJL0_9BACT) HSP 1 Score: 152 bits (385), Expect = 2.750e-42 Identity = 77/147 (52.38%), Postives = 102/147 (69.39%), Query Frame = 1 Query: 4 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQ 444 LR+L ++D++ EE FD +TR+A RLFRVP+ L+SLVDA+RQWFK+ GL ET R+ SFC YT LT +V+VVP+AL D RF +P+VTGPP +RFYAG PL +G +G LC++DT P E V A+L LAE + L+ Sbjct: 17 LRALGLLDTEHEERFDVVTRMAKRLFRVPMALVSLVDADRQWFKSCDGLDATETSREVSFCGYTILTD--EVMVVPNALEDERFHDNPLVTGPPDIRFYAGYPLSSDGFNIGTLCIIDTEPREFSDQEVKMLADLGGLAEREIAALE 161
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A3R8TBN5_9BURK (GGDEF and EAL domain-containing protein n=1 Tax=Aquabacterium soli TaxID=2493092 RepID=A0A3R8TBN5_9BURK) HSP 1 Score: 158 bits (399), Expect = 3.200e-42 Identity = 78/154 (50.65%), Postives = 111/154 (72.08%), Query Frame = 1 Query: 1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLIL-EGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRV 459 LL+ L+++D+ +++FD +TRLA+R+F VPI L++L+D RQWFK+R G+ + ETPRD +FCAY L DV+VV DA D RFR +P+VTG PH+RFYAGAPL +G+ LG LCL+D+ PHEA FG ++A L+ +A V + L+ R + Sbjct: 16 LLQELRILDTPPDQAFDLVTRLASRVFGVPIALVTLIDQGRQWFKSRVGMDIQETPRDQAFCAYAILQA--DVMVVLDAHTDERFRGNPLVTGDPHIRFYAGAPLTSRDGLTLGTLCLIDSVPHEA--FGPQEQAMLLTMAAMVTLRLESLRNI 165 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7170 ID=mRNA_7170|Name=jgi.p|Trimin1|162539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_21:591820..593145- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCTGCGCAGCCTTCAGGTGGTGGACAGCGATGCAGAAGAGTCGTTCGAback to top protein sequence of jgi.p|Trimin1|162539 >Trimin1|162539|e_gw1.21.9.1 ID=Trimin1|162539|e_gw1.21.9.1|Name=jgi.p|Trimin1|162539|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLback to top mRNA from alignment at Contig_21:591820..593145- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7170 ID=mRNA_7170|Name=jgi.p|Trimin1|162539|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1326bp|location=Sequence derived from alignment at Contig_21:591820..593145- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_21:591820..593145- >mRNA_7170 ID=mRNA_7170|Name=jgi.p|Trimin1|162539|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_21:591820..593145- (Tribonema minus UTEX_B_3156 )back to top |