Trimin1|162539|e_gw1.21.9.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|162539
Unique NameTrimin1|162539|e_gw1.21.9.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length174
Homology
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A835Z1R9_9STRA (GAF domain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R9_9STRA)

HSP 1 Score: 344 bits (883), Expect = 7.330e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQVWCQ 173
            LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQVWCQ
Sbjct:    1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQVWCQ 173          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A6B2L196_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L196_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 1.650e-46
Identity = 89/167 (53.29%), Postives = 115/167 (68.86%), Query Frame = 0
Query:    4 SLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPL-ILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGHITAVAHNLQ 169
            SL V+D+  +  FDRIT LA+RLF+VPI L+SLVDA RQWFK+R GL  +ETPR  SFCAY  L  APD+ VV D+L+D RFR +P+V GPP +RFYAGA L   + VKLG LCL+DT P E   F + +K  L+ LA  VV +L+      + ++ +ITA  HNL+
Sbjct:    3 SLHVLDTPPDLPFDRITSLASRLFKVPIALVSLVDAHRQWFKSRYGLEASETPRHCSFCAYAVLEDAPDIFVVLDSLKDPRFRENPLVLGPPFVRFYAGAALNYTDDVKLGTLCLIDTVPREH--FTLEEKMQLMDLASVVVTQLKFLMVQEQSRMTYITATTHNLR 167          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: UPI001EE31374 (GAF domain-containing protein n=1 Tax=Methylobacterium iners TaxID=418707 RepID=UPI001EE31374)

HSP 1 Score: 160 bits (406), Expect = 4.940e-46
Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = 0
Query:    1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPL-ILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVEL 147
            +LR LQ++D  AE S DRITR+A RLF VPI L+SL+DA+RQWFK+R GL+   TPRD +FC YT    +  V VVPDA  DRRF  +P+VTG PH+RFYAGAPL +  G++LG+LCL+DT P +   F  AD   L ALA  VV E+
Sbjct:   20 VLRGLQLIDGVAEPSLDRITRIAQRLFEVPIALVSLIDADRQWFKSRCGLTAESTPRDQAFCNYTIEHDS--VFVVPDARADRRFSSNPLVTGAPHIRFYAGAPLTVAPGIRLGSLCLIDTRPRD---FHPADMQRLAALATQVVGEI 162          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A2U8W863_9HYPH (Diguanylate cyclase n=1 Tax=Methylobacterium durans TaxID=2202825 RepID=A0A2U8W863_9HYPH)

HSP 1 Score: 155 bits (392), Expect = 5.960e-44
Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 0
Query:    2 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGH 160
            LR LQV+D+  E SFDR+  +A  +F VPI L+SL+D++RQWFKA+ GL+V+ET RD +FC YT L     V+ VPDA RD  F ++P+VTG PH+RFYAGAPLI   G++LG+LC++DT P E   F  AD   L  LA+  V E+  R  +LRG + H
Sbjct:   15 LRRLQVLDTPPEPSFDRLVEIARSVFGVPIALVSLIDSDRQWFKAKCGLAVSETHRDLAFCNYTILHDT--VLAVPDARRDPTFANNPLVTGEPHIRFYAGAPLITAPGIRLGSLCVIDTKPRE---FDAADARVLAGLAKIAVDEIWLRD-LLRGDIPH 168          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A2V3XR01_9BURK (PAS domain S-box-containing protein/diguanylate cyclase (GGDEF)-like protein n=7 Tax=Paraburkholderia TaxID=1822464 RepID=A0A2V3XR01_9BURK)

HSP 1 Score: 161 bits (407), Expect = 2.750e-43
Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 0
Query:    2 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLIL-EGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQLGH 160
            L+ L ++DS+ EE+FDRI RLAAR FRVPI L+SLVD +RQWFK+  G++  ETPR  SFCA+  L+  P  +VV DAL D RF  +P+V G PH+RFYAGAPL L +G  +G LCL+DTAP    AF +AD   L   A+ V  EL+ RR+++R +  H
Sbjct:   17 LQRLDILDSEPEEAFDRIARLAARAFRVPIVLVSLVDEDRQWFKSHYGIAACETPRSMSFCAHAVLSKRP--LVVEDALDDERFLDNPLVLGAPHIRFYAGAPLRLADGQVVGTLCLIDTAPR---AFEIADVETLADYAQLVERELEVRRKLIRSRTAH 171          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A5N5TWV0_9GAMM (Sensor domain-containing diguanylate cyclase n=28 Tax=Shewanella TaxID=22 RepID=A0A5N5TWV0_9GAMM)

HSP 1 Score: 154 bits (388), Expect = 8.710e-43
Identity = 78/158 (49.37%), Postives = 106/158 (67.09%), Query Frame = 0
Query:    2 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRVLRGQL 158
            L+ L V+D++AEE FDRI+R+A RLF VPICL+SLVDA+RQWFK+  G+S+ ETPRD SFC +  L+  P+ +++PD L+D RF  +P+VTG PH+RFYAG PL +  G ++G  C++D  P E       DK  L  L   V  ELQ    V + +L
Sbjct:   17 LQGLGVLDTEAEERFDRISRMAQRLFEVPICLVSLVDAKRQWFKSSLGISLRETPRDQSFCGHAILS--PESMLIPDTLKDPRFADNPLVTGAPHIRFYAGYPLTMRNGCRVGTFCIIDVRPRE---LSQEDKLCLEDLGHMVENELQHMEEVCQDEL 169          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A4R6NB05_9BURK (Diguanylate cyclase with GAF sensor n=1 Tax=Kinneretia asaccharophila TaxID=582607 RepID=A0A4R6NB05_9BURK)

HSP 1 Score: 153 bits (386), Expect = 1.950e-42
Identity = 83/177 (46.89%), Postives = 112/177 (63.28%), Query Frame = 0
Query:    2 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRR----RVLRGQLGHITAVAHNLQVWCQ 173
            LRSL ++D+  EE FDR+TRLA RLF VPI LISLVDA RQWFK+  G++  ETPR+ SFC +  L  A ++ ++PDA +D RF  +P+VTG PH+RFYAG PL +  G +LG LCL+DT P +  A  +A   +L  +AE  +  +Q         L  + G +    H LQ WC+
Sbjct:   17 LRSLNILDTPTEERFDRLTRLAKRLFGVPIVLISLVDAHRQWFKSCVGVNATETPREVSFCGHAIL--ADEIFLIPDATQDPRFADNPLVTGEPHIRFYAGCPLSVGVGGRLGTLCLIDTEPRQMSADDLALLRDLARMAEQELAAVQMATLDELTGLSNRRGFMALAQHALQ-WCE 190          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: UPI000B360124 (sensor domain-containing diguanylate cyclase n=1 Tax=Thaumasiovibrio subtropicus TaxID=1891207 RepID=UPI000B360124)

HSP 1 Score: 152 bits (385), Expect = 2.560e-42
Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = 0
Query:    2 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILE-GVKLGALCLLDTAPHEAGAFGVADKANLVALAE 141
            LR L+V+D++ EE +DRITRLA RLF VPI L+SLVD  RQWFK+  GL V ETPRD SFC +  L   P   ++ DA  D RF  +P+VTGPPH+RFYAG PL+ E G KLG LC++D+ PH      + D  +L  +AE
Sbjct:   17 LRGLKVLDTEPEERYDRITRLARRLFNVPIALVSLVDENRQWFKSCFGLDVTETPRDISFCGHAILDNKP--FIIEDAREDSRFADNPLVTGPPHIRFYAGIPLVHEDGEKLGTLCIIDSEPHTLSCEEIEDLIDLAKMAE 155          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A848VJL0_9BACT (Sensor domain-containing diguanylate cyclase n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A848VJL0_9BACT)

HSP 1 Score: 152 bits (385), Expect = 2.750e-42
Identity = 77/147 (52.38%), Postives = 102/147 (69.39%), Query Frame = 0
Query:    2 LRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQ 148
            LR+L ++D++ EE FD +TR+A RLFRVP+ L+SLVDA+RQWFK+  GL   ET R+ SFC YT LT   +V+VVP+AL D RF  +P+VTGPP +RFYAG PL  +G  +G LC++DT P E     V   A+L  LAE  +  L+
Sbjct:   17 LRALGLLDTEHEERFDVVTRMAKRLFRVPMALVSLVDADRQWFKSCDGLDATETSREVSFCGYTILTD--EVMVVPNALEDERFHDNPLVTGPPDIRFYAGYPLSSDGFNIGTLCIIDTEPREFSDQEVKMLADLGGLAEREIAALE 161          
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Match: A0A3R8TBN5_9BURK (GGDEF and EAL domain-containing protein n=1 Tax=Aquabacterium soli TaxID=2493092 RepID=A0A3R8TBN5_9BURK)

HSP 1 Score: 158 bits (399), Expect = 3.200e-42
Identity = 78/154 (50.65%), Postives = 111/154 (72.08%), Query Frame = 0
Query:    1 LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGLSVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFYAGAPLIL-EGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRRRRV 153
            LL+ L+++D+  +++FD +TRLA+R+F VPI L++L+D  RQWFK+R G+ + ETPRD +FCAY  L    DV+VV DA  D RFR +P+VTG PH+RFYAGAPL   +G+ LG LCL+D+ PHEA  FG  ++A L+ +A  V + L+  R +
Sbjct:   16 LLQELRILDTPPDQAFDLVTRLASRVFGVPIALVTLIDQGRQWFKSRVGMDIQETPRDQAFCAYAILQA--DVMVVLDAHTDERFRGNPLVTGDPHIRFYAGAPLTSRDGLTLGTLCLIDSVPHEA--FGPQEQAMLLTMAAMVTLRLESLRNI 165          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162539 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1R9_9STRA7.330e-120100.00GAF domain-like protein (Fragment) n=1 Tax=Tribone... [more]
A0A6B2L196_9EUKA1.650e-4653.29Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
UPI001EE313744.940e-4656.76GAF domain-containing protein n=1 Tax=Methylobacte... [more]
A0A2U8W863_9HYPH5.960e-4451.88Diguanylate cyclase n=1 Tax=Methylobacterium duran... [more]
A0A2V3XR01_9BURK2.750e-4353.13PAS domain S-box-containing protein/diguanylate cy... [more]
A0A5N5TWV0_9GAMM8.710e-4349.37Sensor domain-containing diguanylate cyclase n=28 ... [more]
A0A4R6NB05_9BURK1.950e-4246.89Diguanylate cyclase with GAF sensor n=1 Tax=Kinner... [more]
UPI000B3601242.560e-4253.90sensor domain-containing diguanylate cyclase n=1 T... [more]
A0A848VJL0_9BACT2.750e-4252.38Sensor domain-containing diguanylate cyclase n=1 T... [more]
A0A3R8TBN5_9BURK3.200e-4250.65GGDEF and EAL domain-containing protein n=1 Tax=Aq... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003018GAF domainSMARTSM00065gaf_1coord: 11..157
e-value: 1.4E-8
score: 44.5
IPR003018GAF domainPFAMPF01590GAFcoord: 11..146
e-value: 5.7E-9
score: 36.7
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 4..157
e-value: 6.7E-20
score: 73.6
NoneNo IPR availablePANTHERPTHR43102SLR1143 PROTEINcoord: 2..152
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 11..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:591820..593145 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162539mRNA_7170Tribonema minus UTEX_B_3156 mRNAContig_21 591820..593145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|162539|e_gw1.21.9.1 ID=Trimin1|162539|e_gw1.21.9.1|Name=jgi.p|Trimin1|162539|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp
LLRSLQVVDSDAEESFDRITRLAARLFRVPICLISLVDAERQWFKARAGL
SVAETPRDTSFCAYTFLTGAPDVVVVPDALRDRRFRHSPIVTGPPHLRFY
AGAPLILEGVKLGALCLLDTAPHEAGAFGVADKANLVALAETVVVELQRR
RRVLRGQLGHITAVAHNLQVWCQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003018GAF
IPR029016GAF-like_dom_sf